Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11]
7 sequences; 119,667,750 total letters
Query= NC_005137.2
Length=131160
Score E
Sequences producing significant alignments: (Bits) Value
seq5 95.1 1e-14
seq1 82.4 6e-11
>seq5
Length=26975502
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041
|| |||| ||||| | ||||| || || || |||||||| || ||||||||||| |
Sbjct 14953290 CCACCTCTCAACCTGAGAACCAAGTGGAGAGTTGATTCTTTCTGGATGTTGTAATCTGCA 14953349
Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101
| ||| | ||| || | ||||| || ||| | || || ||||||||||| ||
Sbjct 14953350 AGAGTGCGACCATCGTCAAGCTGTTTACCAGCAAAGATTAGTCTCTGTTGATCCGGAGGG 14953409
Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161
|| ||||| ||||| || || ||| || | | ||| || || | || |
Sbjct 14953410 ACTCCTTCCTTGTCTTGGATCTTAGCTTTAACATTGTCAATAGTGTCTGAACTCTCAACT 14953469
Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208
|| | |||||||||||| ||||| | ||| |||||||| || |||||
Sbjct 14953470 TCAAGGGTAATGGTTTTACCGGTAAGCGTCTTGACAAATATCTGCAT 14953516
>seq1
Length=30427671
Score = 82.4 bits (90), Expect = 6e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058
||||||||| || || || || ||||| ||||||||||| | | || | |||||
Sbjct 24277066 CACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCAGCGAGTGTGCGACCGTCTTC 24277125
Query 20059 CAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118
| || || || ||| | ||||||||||| ||||| || | ||||| || ||
Sbjct 24277126 AAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGATCCGGAGGGATTCCTTCCTTATCCTG 24277185
Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTT 20178
|| || || || | | ||| || ||| | ||| |||| || ||||||||
Sbjct 24277186 GATCTTAGCCTTAACATTGTCAATAGTATCAGAACTTTCAACCTCCAAAGTGATGGTTTT 24277245
Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCAT 20208
||| ||||| || ||||||||||| |||||
Sbjct 24277246 GCCTGTCAAAGTCTTGACAAAAATCTGCAT 24277275
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419587164203967
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |