Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq5 174 1e-38 >seq5 Length=26975502 Score = 174 bits (192), Expect = 1e-38 Identities = 494/754 (66%), Gaps = 9/754 (1%) Strand=Plus/Minus Query 12845 GACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCT 12904 ||||||||||| ||| ||||| || | |||||| || ||||||||||| || || || Sbjct 16409101 GACATAACAGAAGCTTTCTGATACTCACCAACTCTCTTCTCAAAAAAGTTGGTCTTACCC 16409042 Query 12905 TCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACAC 12964 | | |||||| |||||| |||| |||||||| || || ||| || |||| Sbjct 16409041 TGAAGCGAAATCAATTCCATCCAATCAAAAGGATTAGTCACACCATACACCTTACCACAC 16408982 Query 12965 CCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAG 13024 || | | ||||| || |||||||| ||||| |||||||| |||| || |||| Sbjct 16408981 CCAAGCGCAGCCAACAACCTATCAGCAACGAACTCAATGTACTGACTCATCAACTCACGA 16408922 Query 13025 TTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACT 13084 ||||| || | || || | || || | ||| | | | || || ||||| Sbjct 16408921 TTCATCCCAACCAAGGCACAAGAAAGCGCGTCACAAACAAACTCTCTCTCAATCTCAACA 16408862 Query 13085 GCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGA--GGATTTGATAGATGCTTAA 13142 || || ||| || || || ||| ||| | || | | || ||| | || Sbjct 16408861 GCATCACAAACAATCGCT-TTCAAACGATCT-TCATCAAACTTAGTTCTAAGAAGACTAT 16408804 Query 13143 ACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAA 13202 | |||| ||| || ||||||||||| | ||||| ||||| || | |||||||||| Sbjct 16408803 ATATCAAACAAGCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTTGAAA 16408744 Query 13203 ATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCG 13262 | || || || ||||| | |||||||| || | ||| ||||| | | ||| ||| | Sbjct 16408743 AAGTGAGTCCAGGCATTAAACCTCGTTTCTTCAACCAGAATATCGAACAAAAGCTACCGG 16408684 Query 13263 aaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTT 13322 | || ||||| |||||||| |||||||||| | || ||| | | || | Sbjct 16408683 AGAAGAATATACCTTCAACGCAAGCAAACGCTACGATTCTCTCAGCGAA---GCTTTGAG 16408627 Query 13323 TACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTA 13382 | | ||||| || | ||||| | ||||||| || | || || |||| | Sbjct 16408626 ATCCGTTGATCCATTTCATAGCCCATTCTGCTTTT--TTCGTCACAAGGAATGGTTTCGA 16408569 Query 13383 TTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGC 13442 |||| ||| | || || | | || || ||||| ||||| || || | | | | Sbjct 16408568 TTGCACGAAAAAGATGATCTCTCTCTTTGTTGTCTTTGATATACGTGTCGAGAAGGAGAC 16408509 Query 13443 TATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCT 13502 ||||||| || || |||||||| || ||||| |||||||| || || || | ||| | Sbjct 16408508 TATACATCTCGGAGTGAATATTCTCAATCGCGATTTGGAATCCGTAGAAGGCACGAGCTT 16408449 Query 13503 CTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCAC 13562 |||| | |||||| ||||| ||||| || | || ||| ||| || ||||| Sbjct 16408448 CTGAGATCTGAACATCGGACATGAATCTAGTTGAGAGATTCTCGAGAACGATTCCGTCTG 16408389 Query 13563 TAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAA 13596 || || || || || || | ||| ||||| || Sbjct 16408388 ATGCGGCGAAGAAGGCGAGGACGTGTTTAATGAA 16408355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430982363231814