Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq4 96.9 3e-15 seq2 91.5 1e-13 seq1 91.5 1e-13 seq5 86.0 5e-12 >seq4 Length=18585056 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 |||||| |||| | || || || ||||||||| |||||| ||||||||||| ||||| Sbjct 2719470 ACCTCCACGCAGACGCAAGACCAAGTGAAGTGTGGACTCCTTCTGAATGTTGTAGTCAGC 2719411 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 ||| || | || || || ||||| ||| || | || || | |||||| ||| || Sbjct 2719410 CAAAGTTCTTCCATCTTCAAGTTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGTGG 2719351 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTT----GATAGACGCTATGGTATCGGTAGACT 48674 | || || |||||| || || |||| | || | ||||| || | | || Sbjct 2719350 GATACCCTCTTTGTCCTGGATCTT-GGCTTTCACGTTA---TCAATGGTGTCAGAACTCT 2719295 Query 48675 CCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || ||| | || ||||| || ||||||||||| ||||| || |||||||| Sbjct 2719294 CCACCTCCAAAGTGATGGTCTTTCCGGTGAGAGTCTTCACGAAGATCTGCAT 2719243 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 48497 AAACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCA 48556 ||||| || || | ||||| ||| || ||||| || |||||| || |||||||| || Sbjct 1278751 AAACCACCACGGAGCCTTAGCACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCG 1278810 Query 48557 GCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACC 48616 ||||| || | ||||| ||||| || || || | || | ||||||||| ||| Sbjct 1278811 GCCAAAGTACGACCATCCTCAAGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGA 1278870 Query 48617 GGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCC 48676 || | || |||||||||| || || ||| | | ||||| |||| ||| Sbjct 1278871 GGGATACCTTCCTTGTCCTGGATCTTAGCCTTCACGTTGTCAATGGTGTCGGAGCTCTCA 1278930 Query 48677 GTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | || ||||| || || |||||||| ||||| ||||||||||| Sbjct 1278931 ACTTCAAGAGTAATGGTCTTTCCAGTGAGAGTCTTCACGAAAATCTGCAT 1278980 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || || | ||| | || || || || ||| ||||| || || ||||||||||| Sbjct 2718786 ACCACCACGGAGCCTGAGGACCAAGTGGAGGGTGGATTCCTTCTGGATATTGTAATCAGC 2718727 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 ||| || | ||||| |||||||| ||| || |||| | | |||||||||| || Sbjct 2718726 CAACGTACGGCCATCCTCTAGCTGCTTGCCGGCGAAAATAAGCCTCTGCTGATCCGGAGG 2718667 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCC 48676 | | ||||| ||| || || ||| | | | || ||||| |||| ||| Sbjct 2718666 AATGCCCTCCTTATCCTGGATCTTGGCCTTAACGTTGTCG--ATGGTGTCGGAGCTTTCC 2718609 Query 48677 GTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||||| || || || || ||||||||||| || ||||| ||||||||| Sbjct 2718608 ACCTCGAGGGTGATTGTCTTTCCGGTGAGAGTCTTAACAAAGATCTGCATC 2718558 Score = 82.4 bits (90), Expect = 6e-11 Identities = 158/231 (68%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || || | ||| | || || || || ||| ||||| || || ||||||||||| Sbjct 1279437 ACCACCACGGAGCCTGAGAACCAAGTGGAGGGTGGATTCCTTCTGGATATTGTAATCAGC 1279496 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 ||| || | ||||| ||||| || ||| || |||| | | |||||||||| || Sbjct 1279497 CAACGTACGGCCATCCTCTAGCTGTTTTCCGGCGAAAATAAGCCTCTGCTGATCCGGAGG 1279556 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCC 48676 | | |||||| ||| || || ||| | | | || ||||| || | ||| Sbjct 1279557 AATGCCTTCCTTATCCTGGATCTTGGCCTTAACGTTGTCG--ATGGTGTCAGAGCTTTCC 1279614 Query 48677 GTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||||| || || || || ||||||||||| || ||||| ||||||||| Sbjct 1279615 ACCTCGAGGGTGATAGTCTTTCCGGTGAGAGTCTTAACAAAGATCTGCATC 1279665 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 |||||| |||| | || || |||||||| || |||||| || ||||||||||| || Sbjct 2588505 ACCTCCACGCAGACGCAAGACCAAATGAAGCGTAGACTCCTTCTGGATGTTGTAATCCGC 2588564 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 ||| || ||||||| || ||||| ||| || | || || | |||||| ||| || Sbjct 2588565 CAAAGTTCTGCCGTCCTCAAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGG 2588624 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | || ||||| || || || ||||| | ||||| || | |||| Sbjct 2588625 AATACCCTCCTTATCTTGGATCTTGGCCTTGACGTTGTCAATGGTGTCAGAGCTCTCCAC 2588684 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | || || || || || || || ||||| || ||||||||||| Sbjct 2588685 CTCAAGAGTAATCGTCTTTCCCGTTAGGGTTTTAACGAAAATCTGCAT 2588732 >seq2 Length=19698289 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 ||||| || ||||||||||| || || || |||| || |||||||| ||| || || Sbjct 19344891 TCCTTCTGGATGTTGTAATCGGCTAAGGTACGTCCGTCTTCGAGCTGCTTTCCGGCGAAA 19344832 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGAC 48655 || || |||||||| ||| || | | ||||||||| || || ||||| | Sbjct 19344831 ATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTG 19344772 Query 48656 GCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACA 48715 | ||||| || | ||||| ||||| || || || || || || || |||||||| Sbjct 19344771 TCGATGGTGTCAGAGGACTCGACCTCGAGAGTGATCGTCTTCCCCGTTAGGGTTTTCACG 19344712 Query 48716 AAAATCTGCATCGTGTCTTG 48735 || ||||||||| | | ||| Sbjct 19344711 AAGATCTGCATCTTTTTTTG 19344692 >seq1 Length=30427671 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| ||||| || ||| ||||||||| |||||||||||||| | | || |||| || Sbjct 24277066 CACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCAGCGAGTGTGCGACCGTCTTC 24277125 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||||||||| | | || | | |||||||||| || | | |||||| ||| Sbjct 24277126 AAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGATCCGGAGGGATTCCTTCCTTATCCTG 24277185 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 || || ||| | | | || ||||| | | || ||| | || |||||||| Sbjct 24277186 GATCTTAGCCTTAACATTGTCAATAGTATCAGAACTTTCAACCTCCAAAGTGATGGTTTT 24277245 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || | ||| || |||||||||||||| Sbjct 24277246 GCCTGTCAAAGTCTTGACAAAAATCTGCAT 24277275 >seq5 Length=26975502 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || |||||||| || || || |||||||||||||| ||||| || | || || Sbjct 772688 ACCAAATGAAGGGTTGATTCTTTCTGAATGTTGTAATCGGCCAAGGTACGGCCATCTTCT 772747 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 ||||| |||||| || | ||||| | ||||||||| || | | |||||||||| | Sbjct 772748 AGCTGTTTACCGGCGAATATTAATCTTTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGA 772807 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || || ||| | | | ||||| || | ||| ||||| || || || || Sbjct 772808 ATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTCTCAACCTCGAGAGTGATAGTCTTG 772867 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || ||||| |||||||| || || |||||| Sbjct 772868 CCAGTGAGTGTTTTCACGAAGATTTGCATC 772897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421251164062007