Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11]
7 sequences; 119,667,750 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq4 96.9 3e-15
seq2 91.5 1e-13
seq1 91.5 1e-13
seq5 86.0 5e-12
>seq4
Length=18585056
Score = 96.9 bits (106), Expect = 3e-15
Identities = 162/232 (70%), Gaps = 8/232 (3%)
Strand=Plus/Minus
Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558
|||||| |||| | || || || ||||||||| |||||| ||||||||||| |||||
Sbjct 2719470 ACCTCCACGCAGACGCAAGACCAAGTGAAGTGTGGACTCCTTCTGAATGTTGTAGTCAGC 2719411
Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618
||| || | || || || ||||| ||| || | || || | |||||| ||| ||
Sbjct 2719410 CAAAGTTCTTCCATCTTCAAGTTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGTGG 2719351
Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTT----GATAGACGCTATGGTATCGGTAGACT 48674
| || || |||||| || || |||| | || | ||||| || | | ||
Sbjct 2719350 GATACCCTCTTTGTCCTGGATCTT-GGCTTTCACGTTA---TCAATGGTGTCAGAACTCT 2719295
Query 48675 CCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|| ||| | || ||||| || ||||||||||| ||||| || ||||||||
Sbjct 2719294 CCACCTCCAAAGTGATGGTCTTTCCGGTGAGAGTCTTCACGAAGATCTGCAT 2719243
Score = 95.1 bits (104), Expect = 1e-14
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 48497 AAACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCA 48556
||||| || || | ||||| ||| || ||||| || |||||| || |||||||| ||
Sbjct 1278751 AAACCACCACGGAGCCTTAGCACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCG 1278810
Query 48557 GCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACC 48616
||||| || | ||||| ||||| || || || | || | ||||||||| |||
Sbjct 1278811 GCCAAAGTACGACCATCCTCAAGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGA 1278870
Query 48617 GGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCC 48676
|| | || |||||||||| || || ||| | | ||||| |||| |||
Sbjct 1278871 GGGATACCTTCCTTGTCCTGGATCTTAGCCTTCACGTTGTCAATGGTGTCGGAGCTCTCA 1278930
Query 48677 GTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|| | || ||||| || || |||||||| ||||| |||||||||||
Sbjct 1278931 ACTTCAAGAGTAATGGTCTTTCCAGTGAGAGTCTTCACGAAAATCTGCAT 1278980
Score = 87.8 bits (96), Expect = 2e-12
Identities = 159/231 (69%), Gaps = 4/231 (2%)
Strand=Plus/Minus
Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558
||| || || | ||| | || || || || ||| ||||| || || |||||||||||
Sbjct 2718786 ACCACCACGGAGCCTGAGGACCAAGTGGAGGGTGGATTCCTTCTGGATATTGTAATCAGC 2718727
Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618
||| || | ||||| |||||||| ||| || |||| | | |||||||||| ||
Sbjct 2718726 CAACGTACGGCCATCCTCTAGCTGCTTGCCGGCGAAAATAAGCCTCTGCTGATCCGGAGG 2718667
Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCC 48676
| | ||||| ||| || || ||| | | | || ||||| |||| |||
Sbjct 2718666 AATGCCCTCCTTATCCTGGATCTTGGCCTTAACGTTGTCG--ATGGTGTCGGAGCTTTCC 2718609
Query 48677 GTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727
||||| || || || || ||||||||||| || ||||| |||||||||
Sbjct 2718608 ACCTCGAGGGTGATTGTCTTTCCGGTGAGAGTCTTAACAAAGATCTGCATC 2718558
Score = 82.4 bits (90), Expect = 6e-11
Identities = 158/231 (68%), Gaps = 4/231 (2%)
Strand=Plus/Plus
Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558
||| || || | ||| | || || || || ||| ||||| || || |||||||||||
Sbjct 1279437 ACCACCACGGAGCCTGAGAACCAAGTGGAGGGTGGATTCCTTCTGGATATTGTAATCAGC 1279496
Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618
||| || | ||||| ||||| || ||| || |||| | | |||||||||| ||
Sbjct 1279497 CAACGTACGGCCATCCTCTAGCTGTTTTCCGGCGAAAATAAGCCTCTGCTGATCCGGAGG 1279556
Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCC 48676
| | |||||| ||| || || ||| | | | || ||||| || | |||
Sbjct 1279557 AATGCCTTCCTTATCCTGGATCTTGGCCTTAACGTTGTCG--ATGGTGTCAGAGCTTTCC 1279614
Query 48677 GTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727
||||| || || || || ||||||||||| || ||||| |||||||||
Sbjct 1279615 ACCTCGAGGGTGATAGTCTTTCCGGTGAGAGTCTTAACAAAGATCTGCATC 1279665
Score = 82.4 bits (90), Expect = 6e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558
|||||| |||| | || || |||||||| || |||||| || ||||||||||| ||
Sbjct 2588505 ACCTCCACGCAGACGCAAGACCAAATGAAGCGTAGACTCCTTCTGGATGTTGTAATCCGC 2588564
Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618
||| || ||||||| || ||||| ||| || | || || | |||||| ||| ||
Sbjct 2588565 CAAAGTTCTGCCGTCCTCAAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGG 2588624
Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678
| || ||||| || || || ||||| | ||||| || | ||||
Sbjct 2588625 AATACCCTCCTTATCTTGGATCTTGGCCTTGACGTTGTCAATGGTGTCAGAGCTCTCCAC 2588684
Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
||| | || || || || || || || ||||| || |||||||||||
Sbjct 2588685 CTCAAGAGTAATCGTCTTTCCCGTTAGGGTTTTAACGAAAATCTGCAT 2588732
>seq2
Length=19698289
Score = 91.5 bits (100), Expect = 1e-13
Identities = 140/200 (70%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595
||||| || ||||||||||| || || || |||| || |||||||| ||| || ||
Sbjct 19344891 TCCTTCTGGATGTTGTAATCGGCTAAGGTACGTCCGTCTTCGAGCTGCTTTCCGGCGAAA 19344832
Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGAC 48655
|| || |||||||| ||| || | | ||||||||| || || ||||| |
Sbjct 19344831 ATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTG 19344772
Query 48656 GCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACA 48715
| ||||| || | ||||| ||||| || || || || || || || ||||||||
Sbjct 19344771 TCGATGGTGTCAGAGGACTCGACCTCGAGAGTGATCGTCTTCCCCGTTAGGGTTTTCACG 19344712
Query 48716 AAAATCTGCATCGTGTCTTG 48735
|| ||||||||| | | |||
Sbjct 19344711 AAGATCTGCATCTTTTTTTG 19344692
>seq1
Length=30427671
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576
||| ||||| || ||| ||||||||| |||||||||||||| | | || |||| ||
Sbjct 24277066 CACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCAGCGAGTGTGCGACCGTCTTC 24277125
Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636
|||||||||||| | | || | | |||||||||| || | | |||||| |||
Sbjct 24277126 AAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGATCCGGAGGGATTCCTTCCTTATCCTG 24277185
Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696
|| || ||| | | | || ||||| | | || ||| | || ||||||||
Sbjct 24277186 GATCTTAGCCTTAACATTGTCAATAGTATCAGAACTTTCAACCTCCAAAGTGATGGTTTT 24277245
Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|| || | ||| || ||||||||||||||
Sbjct 24277246 GCCTGTCAAAGTCTTGACAAAAATCTGCAT 24277275
>seq5
Length=26975502
Score = 86.0 bits (94), Expect = 5e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577
|| |||||||| || || || |||||||||||||| ||||| || | || ||
Sbjct 772688 ACCAAATGAAGGGTTGATTCTTTCTGAATGTTGTAATCGGCCAAGGTACGGCCATCTTCT 772747
Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637
||||| |||||| || | ||||| | ||||||||| || | | |||||||||| |
Sbjct 772748 AGCTGTTTACCGGCGAATATTAATCTTTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGA 772807
Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697
|| || ||| | | | ||||| || | ||| ||||| || || || ||
Sbjct 772808 ATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTCTCAACCTCGAGAGTGATAGTCTTG 772867
Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCATC 48727
|| ||||| |||||||| || || ||||||
Sbjct 772868 CCAGTGAGTGTTTTCACGAAGATTTGCATC 772897
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421251164062007
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |