Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq1 122 5e-23 seq5 114 7e-21 seq4 111 8e-20 seq2 111 8e-20 seq3 109 3e-19 >seq1 Length=30427671 Score = 122 bits (134), Expect = 5e-23 Identities = 83/93 (89%), Gaps = 1/93 (1%) Strand=Plus/Plus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 ||| ||||||| | || ||||||||||| | | |||||||| ||||||||||||||||| Sbjct 4522691 AATAAATAAAAGA-CATATTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTA 4522749 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||| |||||||||||||||||||| Sbjct 4522750 GCACGACGCTCTAACCAACTGAGCTAATGGGCC 4522782 Score = 111 bits (122), Expect = 8e-20 Identities = 71/78 (91%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 1978157 TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 1978098 Query 11516 TGAGCTAATGGGCCGTCG 11533 |||||||||||||| ||| Sbjct 1978097 TGAGCTAATGGGCCTTCG 1978080 Score = 109 bits (120), Expect = 3e-19 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || ||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||| Sbjct 25886612 AAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 25886553 Query 11513 AACTGAGCTAATGGGCC 11529 ||||||||||||||||| Sbjct 25886552 AACTGAGCTAATGGGCC 25886536 Score = 107 bits (118), Expect = 1e-18 Identities = 79/93 (85%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| ||| ||||| || | ||||||||||| |||||||||||||||||||||||| Sbjct 25989814 AAAAACAAAAATGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACG 25989755 Query 11505 CTCTRACCAACTGAGCTAATGGGCCGTCGACGA 11537 |||| ||||||||||||||| |||| | || || Sbjct 25989754 CTCTAACCAACTGAGCTAATAGGCCTTTGATGA 25989722 Score = 104 bits (114), Expect = 1e-17 Identities = 74/86 (86%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||| | ||| ||||| || | ||||||||||| ||||||||||||||||||||||| Sbjct 11104198 AAAATAAAAAAGTGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGAC 11104139 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| ||||||||||||||| |||| Sbjct 11104138 GCTCTAACCAACTGAGCTAATAGGCC 11104113 >seq5 Length=26975502 Score = 114 bits (126), Expect = 7e-21 Identities = 76/84 (90%), Gaps = 1/84 (1%) Strand=Plus/Minus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 |||| ||||| |||||||| | | |||||||| |||||||||||||||||||||||||| Sbjct 15575939 AAAACCAAAT-GGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGC 15575881 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| |||||||||||||||||||| Sbjct 15575880 TCTAACCAACTGAGCTAATGGGCC 15575857 Score = 111 bits (122), Expect = 8e-20 Identities = 77/87 (89%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||||||| | ||||||||| | | |||||||| ||||||||||||||||||||||| Sbjct 22828215 TAAAAAATTGA--TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGA 22828158 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||||||||||||||||||| Sbjct 22828157 CGCTCTAACCAACTGAGCTAATGGGCC 22828131 Score = 111 bits (122), Expect = 8e-20 Identities = 77/87 (89%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 11444 AAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||| || ||| ||||||||| | | |||||||| ||||||||||||||||||||||| Sbjct 26568483 AAAACATTAAAGGTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGA 26568424 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||||||||||||||||||| Sbjct 26568423 CGCTCTAACCAACTGAGCTAATGGGCC 26568397 Score = 104 bits (114), Expect = 1e-17 Identities = 74/86 (86%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||| | ||| ||||| || | ||||||||||| ||||||||||||||||||||||| Sbjct 5157724 AAAACAAAAAAGTGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGAC 5157665 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| ||||||||||||||| |||| Sbjct 5157664 GCTCTAACCAACTGAGCTAATAGGCC 5157639 >seq4 Length=18585056 Score = 111 bits (122), Expect = 8e-20 Identities = 71/78 (91%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 18542248 AAAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 18542189 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||||||||| Sbjct 18542188 CAACTGAGCTAATGGGCC 18542171 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||| || | ||||||||||| |||||||||||||||||||||||||||| || Sbjct 13341489 AAAGTGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 13341548 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 13341549 CAACTGAGCTAATAGGCC 13341566 Score = 100 bits (110), Expect = 1e-16 Identities = 70/79 (89%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 11452 AAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRA 11510 |||| ||||| || | ||||||||||| |||||||||||||||||||||||||||| | Sbjct 13336332 AAATGTGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAA 13336391 Query 11511 CCAACTGAGCTAATGGGCC 11529 |||||||||||||| |||| Sbjct 13336392 CCAACTGAGCTAATAGGCC 13336410 >seq2 Length=19698289 Score = 111 bits (122), Expect = 8e-20 Identities = 71/78 (91%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 7742789 AAAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 7742730 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||||||||| Sbjct 7742729 CAACTGAGCTAATGGGCC 7742712 Score = 107 bits (118), Expect = 1e-18 Identities = 76/88 (86%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| | || ||||| || | ||||||||||| |||||||||||||||||||||||| Sbjct 9502364 AAAAAACGAAATGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACG 9502305 Query 11505 CTCTRACCAACTGAGCTAATGGGCCGTC 11532 |||| ||||||||||||||| |||| || Sbjct 9502304 CTCTAACCAACTGAGCTAATAGGCCATC 9502277 Score = 105 bits (116), Expect = 3e-18 Identities = 77/89 (87%), Gaps = 1/89 (1%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || |||||| |||| |||| || | ||||||||||| |||||||||||||||||||| Sbjct 9449795 AAGAAAAAAAGAAAT-GGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCAC 9449853 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||| |||| Sbjct 9449854 GACGCTCTAACCAACTGAGCTAATAGGCC 9449882 >seq3 Length=23459830 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 469733 TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 469674 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 469673 TGAGCTAATGGGCC 469660 Score = 107 bits (118), Expect = 1e-18 Identities = 75/86 (87%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||| || ||| ||||| || | ||||||||||| ||||||||||||||||||||||| Sbjct 9372362 AAAATATAAAAATGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGAC 9372421 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| ||||||||||||||| |||| Sbjct 9372422 GCTCTAACCAACTGAGCTAATAGGCC 9372447 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261491177691532