Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11]
7 sequences; 119,667,750 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq1 122 5e-23
seq5 114 7e-21
seq4 111 8e-20
seq2 111 8e-20
seq3 109 3e-19
>seq1
Length=30427671
Score = 122 bits (134), Expect = 5e-23
Identities = 83/93 (89%), Gaps = 1/93 (1%)
Strand=Plus/Plus
Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496
||| ||||||| | || ||||||||||| | | |||||||| |||||||||||||||||
Sbjct 4522691 AATAAATAAAAGA-CATATTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTA 4522749
Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||||||| ||||||||||||||||||||
Sbjct 4522750 GCACGACGCTCTAACCAACTGAGCTAATGGGCC 4522782
Score = 111 bits (122), Expect = 8e-20
Identities = 71/78 (91%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1978157 TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 1978098
Query 11516 TGAGCTAATGGGCCGTCG 11533
|||||||||||||| |||
Sbjct 1978097 TGAGCTAATGGGCCTTCG 1978080
Score = 109 bits (120), Expect = 3e-19
Identities = 70/77 (91%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512
|| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||
Sbjct 25886612 AAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 25886553
Query 11513 AACTGAGCTAATGGGCC 11529
|||||||||||||||||
Sbjct 25886552 AACTGAGCTAATGGGCC 25886536
Score = 107 bits (118), Expect = 1e-18
Identities = 79/93 (85%), Gaps = 0/93 (0%)
Strand=Plus/Minus
Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504
||||| ||| ||||| || | ||||||||||| ||||||||||||||||||||||||
Sbjct 25989814 AAAAACAAAAATGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACG 25989755
Query 11505 CTCTRACCAACTGAGCTAATGGGCCGTCGACGA 11537
|||| ||||||||||||||| |||| | || ||
Sbjct 25989754 CTCTAACCAACTGAGCTAATAGGCCTTTGATGA 25989722
Score = 104 bits (114), Expect = 1e-17
Identities = 74/86 (86%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503
|||| | ||| ||||| || | ||||||||||| |||||||||||||||||||||||
Sbjct 11104198 AAAATAAAAAAGTGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGAC 11104139
Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529
||||| ||||||||||||||| ||||
Sbjct 11104138 GCTCTAACCAACTGAGCTAATAGGCC 11104113
>seq5
Length=26975502
Score = 114 bits (126), Expect = 7e-21
Identities = 76/84 (90%), Gaps = 1/84 (1%)
Strand=Plus/Minus
Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505
|||| ||||| |||||||| | | |||||||| ||||||||||||||||||||||||||
Sbjct 15575939 AAAACCAAAT-GGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGC 15575881
Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529
||| ||||||||||||||||||||
Sbjct 15575880 TCTAACCAACTGAGCTAATGGGCC 15575857
Score = 111 bits (122), Expect = 8e-20
Identities = 77/87 (89%), Gaps = 2/87 (2%)
Strand=Plus/Minus
Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502
|||||||| | ||||||||| | | |||||||| |||||||||||||||||||||||
Sbjct 22828215 TAAAAAATTGA--TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGA 22828158
Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||| ||||||||||||||||||||
Sbjct 22828157 CGCTCTAACCAACTGAGCTAATGGGCC 22828131
Score = 111 bits (122), Expect = 8e-20
Identities = 77/87 (89%), Gaps = 1/87 (1%)
Strand=Plus/Minus
Query 11444 AAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502
|||| || ||| ||||||||| | | |||||||| |||||||||||||||||||||||
Sbjct 26568483 AAAACATTAAAGGTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGA 26568424
Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||| ||||||||||||||||||||
Sbjct 26568423 CGCTCTAACCAACTGAGCTAATGGGCC 26568397
Score = 104 bits (114), Expect = 1e-17
Identities = 74/86 (86%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503
|||| | ||| ||||| || | ||||||||||| |||||||||||||||||||||||
Sbjct 5157724 AAAACAAAAAAGTGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGAC 5157665
Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529
||||| ||||||||||||||| ||||
Sbjct 5157664 GCTCTAACCAACTGAGCTAATAGGCC 5157639
>seq4
Length=18585056
Score = 111 bits (122), Expect = 8e-20
Identities = 71/78 (91%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511
||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 18542248 AAAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 18542189
Query 11512 CAACTGAGCTAATGGGCC 11529
||||||||||||||||||
Sbjct 18542188 CAACTGAGCTAATGGGCC 18542171
Score = 102 bits (112), Expect = 4e-17
Identities = 69/78 (88%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511
||| ||||| || | ||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 13341489 AAAGTGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 13341548
Query 11512 CAACTGAGCTAATGGGCC 11529
||||||||||||| ||||
Sbjct 13341549 CAACTGAGCTAATAGGCC 13341566
Score = 100 bits (110), Expect = 1e-16
Identities = 70/79 (89%), Gaps = 1/79 (1%)
Strand=Plus/Plus
Query 11452 AAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRA 11510
|||| ||||| || | ||||||||||| |||||||||||||||||||||||||||| |
Sbjct 13336332 AAATGTGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAA 13336391
Query 11511 CCAACTGAGCTAATGGGCC 11529
|||||||||||||| ||||
Sbjct 13336392 CCAACTGAGCTAATAGGCC 13336410
>seq2
Length=19698289
Score = 111 bits (122), Expect = 8e-20
Identities = 71/78 (91%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511
||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 7742789 AAAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 7742730
Query 11512 CAACTGAGCTAATGGGCC 11529
||||||||||||||||||
Sbjct 7742729 CAACTGAGCTAATGGGCC 7742712
Score = 107 bits (118), Expect = 1e-18
Identities = 76/88 (86%), Gaps = 0/88 (0%)
Strand=Plus/Minus
Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504
||||| | || ||||| || | ||||||||||| ||||||||||||||||||||||||
Sbjct 9502364 AAAAAACGAAATGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACG 9502305
Query 11505 CTCTRACCAACTGAGCTAATGGGCCGTC 11532
|||| ||||||||||||||| |||| ||
Sbjct 9502304 CTCTAACCAACTGAGCTAATAGGCCATC 9502277
Score = 105 bits (116), Expect = 3e-18
Identities = 77/89 (87%), Gaps = 1/89 (1%)
Strand=Plus/Plus
Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500
|| |||||| |||| |||| || | ||||||||||| ||||||||||||||||||||
Sbjct 9449795 AAGAAAAAAAGAAAT-GGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCAC 9449853
Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||| ||||||||||||||| ||||
Sbjct 9449854 GACGCTCTAACCAACTGAGCTAATAGGCC 9449882
>seq3
Length=23459830
Score = 109 bits (120), Expect = 3e-19
Identities = 68/74 (92%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 469733 TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 469674
Query 11516 TGAGCTAATGGGCC 11529
||||||||||||||
Sbjct 469673 TGAGCTAATGGGCC 469660
Score = 107 bits (118), Expect = 1e-18
Identities = 75/86 (87%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503
|||| || ||| ||||| || | ||||||||||| |||||||||||||||||||||||
Sbjct 9372362 AAAATATAAAAATGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGAC 9372421
Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529
||||| ||||||||||||||| ||||
Sbjct 9372422 GCTCTAACCAACTGAGCTAATAGGCC 9372447
Lambda K H
0.638 0.410 0.920
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 261491177691532
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |