Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11]
7 sequences; 119,667,750 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq1 176 7e-40
seq5 159 5e-35
seq2 120 5e-23
seq3 113 7e-21
>seq1
Length=30427671
Score = 176 bits (194), Expect = 7e-40
Identities = 184/242 (76%), Gaps = 0/242 (0%)
Strand=Plus/Plus
Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519
|||||||| ||||||||||||||||| ||||| |||||||| |||||| | ||||| |||
Sbjct 2369284 GATAACATTCAAGGAATCACCAAGCCTGCTATTCGTCGTCTTGCTCGTAGAGGTGGTGTC 2369343
Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579
|||||| || ||| | |||| ||||||| | | ||| | |||||||||||| ||
Sbjct 2369344 AAGCGTATCAGTGGTCTCATCTACGAAGAGACCAGAGGTGTCCTCAAGATCTTCCTCGAG 2369403
Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639
| ||||||| ||| || | ||| || |||||||| | | ||||| || ||| ||
Sbjct 2369404 AATGTTATCCGTGACGCCGTTACCTACACTGAGCACGCCAGGAGGAAGACGGTGACCGCC 2369463
Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699
|||||| | ||||| || ||||| | ||||| |||| | || ||||| ||| |||||
Sbjct 2369464 ATGGATGTTGTCTACGCTTTGAAGAGGCAAGGTCGTACTCTCTACGGTTTCGGAGGTTAA 2369523
Query 16700 TC 16701
||
Sbjct 2369524 TC 2369525
Score = 170 bits (188), Expect = 3e-38
Identities = 183/242 (76%), Gaps = 0/242 (0%)
Strand=Plus/Minus
Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519
|||||||| ||||||||||||||||| || || |||||||| |||||| | ||||| |||
Sbjct 2421674 GATAACATTCAAGGAATCACCAAGCCTGCCATTCGTCGTCTTGCTCGTAGAGGTGGTGTC 2421615
Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579
|||||| || ||| | |||| ||||||| | | ||| | |||||||||||| ||
Sbjct 2421614 AAGCGTATCAGTGGTCTCATCTACGAAGAGACCAGAGGTGTCCTCAAGATCTTCCTCGAG 2421555
Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639
| || |||| ||| || | || || |||||||||| | | ||||| || ||| ||
Sbjct 2421554 AATGTCATCCGTGACGCCGTTACTTACACTGAGCACGCTAGAAGGAAGACGGTGACCGCC 2421495
Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699
|||||| | ||||| || ||||| | ||||| |||| | || ||||| ||| |||||
Sbjct 2421494 ATGGATGTTGTCTACGCTTTGAAGAGGCAAGGTCGTACTCTCTACGGTTTCGGAGGTTAA 2421435
Query 16700 TC 16701
||
Sbjct 2421434 TC 2421433
>seq5
Length=26975502
Score = 159 bits (176), Expect = 5e-35
Identities = 181/243 (74%), Gaps = 0/243 (0%)
Strand=Plus/Plus
Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517
|||| ||||||||||||||||||||||| || || || | |||||||| | |||||||
Sbjct 24051719 GAGACAACATCCAAGGAATCACCAAGCCTGCGATTCGAAGATTGGCTCGTAGAGGTGGAG 24051778
Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577
|||||||| || ||| | |||| || |||| ||||| || | |||||||| |||
Sbjct 24051779 TCAAGCGTATCAGTGGTCTCATCTACGAGGAGACTCGTGGCGTCCTCAAGATCTTTCTCG 24051838
Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637
||| ||| || | ||||||| || || ||||||||||||| | |||||||| |||
Sbjct 24051839 AGAACGTGATTCGTGATGCTGTCACTTACACCGAGCACGCTAGGAGGAAGACTGTGACCG 24051898
Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697
|||||||| | ||||| || | || | ||||| | | |||| || || || |||
Sbjct 24051899 CCATGGATGTTGTCTACGCTCTCAAGAGGCAAGGAAGGACTCTTTACGGATTCGGTGGTT 24051958
Query 16698 AAT 16700
|||
Sbjct 24051959 AAT 24051961
Score = 147 bits (162), Expect = 3e-31
Identities = 152/199 (76%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517
|||| ||||||||||||||||||||||| || || || | |||||||| | |||||||
Sbjct 24146593 GAGACAACATCCAAGGAATCACCAAGCCTGCCATTCGAAGATTGGCTCGTAGAGGTGGAG 24146534
Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577
|||||||| | ||| | |||| || |||| |||| || | |||||||| |||
Sbjct 24146533 TCAAGCGTATTAGTGGTCTCATCTACGAGGAGACACGTGGCGTCCTCAAGATCTTTCTCG 24146474
Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637
||| ||| || | ||||||| || || ||||||||||||| | |||||||| |||
Sbjct 24146473 AGAACGTAATTCGTGATGCTGTCACTTACACCGAGCACGCTAGGAGGAAGACTGTGACCG 24146414
Query 16638 CCATGGATATCGTCTATGC 16656
|||||||| | ||||| ||
Sbjct 24146413 CCATGGATGTTGTCTACGC 24146395
>seq2
Length=19698289
Score = 120 bits (132), Expect = 5e-23
Identities = 173/244 (71%), Gaps = 0/244 (0%)
Strand=Plus/Minus
Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517
|||| ||||| ||||||||||| |||||||| || |||||||| |||||| | || || |
Sbjct 12329884 GAGACAACATTCAAGGAATCACAAAGCCAGCGATTCGTCGTCTTGCTCGTAGAGGAGGTG 12329825
Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577
| ||| | || ||||||| |||||||||| | | | ||| |||||||| || ||
Sbjct 12329824 TGAAGAGAATCAGTGGATTGATCTATGAAGAAACGAGAGGTGTGTTGAAGATTTTTCTGG 12329765
Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637
||| || || |||||| | || || ||||| || | | ||||| || ||
Sbjct 12329764 AGAATGTGATTAGAGATGCTGTTACTTACACTGAGCATGCGAGGAGGAAGACGGTGACTG 12329705
Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697
| |||||| | || ||||| ||||| | ||||| | | | ||||| ||||| |||
Sbjct 12329704 CTATGGATGTTGTTTATGCCTTGAAGAGACAAGGAAGAACTCTATATGGATTTGGTGGTT 12329645
Query 16698 AATC 16701
|||
Sbjct 12329644 GATC 12329641
>seq3
Length=23459830
Score = 113 bits (124), Expect = 7e-21
Identities = 166/235 (71%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517
|||| ||||||||||| || ||||| || || || |||||||| || | | || || |
Sbjct 19912900 GAGACAACATCCAAGGGATTACCAAACCTGCGATTCGTCGTCTCGCGAGAAGAGGAGGCG 19912841
Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577
| |||||| || ||| ||| |||||||||||| ||| | ||| | |||||||| |||
Sbjct 19912840 TGAAGCGTATCAGTGGTTTGATCTATGAAGAGACTCGCGGCGTTCTCAAGATCTTTCTCG 19912781
Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637
||| ||| || | ||| || | || || ||||||||| || || ||||| ||
Sbjct 19912780 AGAACGTGATTCGTGACGCCGTTACTTACACGGAGCACGCTCGCCGGAAAACTGTTACGG 19912721
Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692
| ||||| |||| || || | || | ||||| || | | ||||| || ||
Sbjct 19912720 CGATGGACGTCGTTTACGCTCTCAAGAGACAAGGACGAACTTTGTATGGATTCGG 19912666
Score = 98.7 bits (108), Expect = 2e-16
Identities = 141/199 (71%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517
|||| ||||||||||||||||| || || || || || | |||||||| | ||||| |
Sbjct 16883460 GAGACAACATCCAAGGAATCACTAAACCGGCGATTCGGAGATTGGCTCGTAGAGGTGGTG 16883519
Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577
| || ||| | ||| || |||| ||||||| |||| ||| | |||||||| |
Sbjct 16883520 TTAAACGTATTAGTGGTCTGATCTACGAAGAGACACGTGGCGTTCTCAAGATCTTTTTGG 16883579
Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637
||| ||||||| ||| || | || || ||||||||| | ||||| || ||
Sbjct 16883580 AGAATGTTATCCGTGACGCCGTTACTTACACTGAGCACGCTCGGAGGAAGACGGTGACTG 16883639
Query 16638 CCATGGATATCGTCTATGC 16656
| |||||| | || |||||
Sbjct 16883640 CTATGGATGTTGTTTATGC 16883658
Score = 93.3 bits (102), Expect = 7e-15
Identities = 140/199 (70%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517
|||| ||||||||||||||||| || || || || || | |||||||| | ||||| |
Sbjct 17020284 GAGACAACATCCAAGGAATCACTAAACCGGCGATTCGGAGATTGGCTCGTAGAGGTGGTG 17020225
Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577
| || ||| | ||| ||| |||| || |||| |||| ||| | |||||||| |
Sbjct 17020224 TTAAACGTATTAGTGGTTTGATCTACGAGGAGACACGTGGCGTTCTCAAGATCTTTTTGG 17020165
Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637
| | ||||||| ||| || | || || ||||||||| | ||||| || ||
Sbjct 17020164 AAAATGTTATCCGTGACGCCGTTACTTACACTGAGCACGCTCGGAGGAAGACGGTGACTG 17020105
Query 16638 CCATGGATATCGTCTATGC 16656
| |||||| | || |||||
Sbjct 17020104 CTATGGATGTTGTTTATGC 17020086
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79075193599851
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |