Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1 176 7e-40 seq5 159 5e-35 seq2 120 5e-23 seq3 113 7e-21 >seq1 Length=30427671 Score = 176 bits (194), Expect = 7e-40 Identities = 184/242 (76%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 |||||||| ||||||||||||||||| ||||| |||||||| |||||| | ||||| ||| Sbjct 2369284 GATAACATTCAAGGAATCACCAAGCCTGCTATTCGTCGTCTTGCTCGTAGAGGTGGTGTC 2369343 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| || ||| | |||| ||||||| | | ||| | |||||||||||| || Sbjct 2369344 AAGCGTATCAGTGGTCTCATCTACGAAGAGACCAGAGGTGTCCTCAAGATCTTCCTCGAG 2369403 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||||||| ||| || | ||| || |||||||| | | ||||| || ||| || Sbjct 2369404 AATGTTATCCGTGACGCCGTTACCTACACTGAGCACGCCAGGAGGAAGACGGTGACCGCC 2369463 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| | ||||| || ||||| | ||||| |||| | || ||||| ||| ||||| Sbjct 2369464 ATGGATGTTGTCTACGCTTTGAAGAGGCAAGGTCGTACTCTCTACGGTTTCGGAGGTTAA 2369523 Query 16700 TC 16701 || Sbjct 2369524 TC 2369525 Score = 170 bits (188), Expect = 3e-38 Identities = 183/242 (76%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 |||||||| ||||||||||||||||| || || |||||||| |||||| | ||||| ||| Sbjct 2421674 GATAACATTCAAGGAATCACCAAGCCTGCCATTCGTCGTCTTGCTCGTAGAGGTGGTGTC 2421615 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| || ||| | |||| ||||||| | | ||| | |||||||||||| || Sbjct 2421614 AAGCGTATCAGTGGTCTCATCTACGAAGAGACCAGAGGTGTCCTCAAGATCTTCCTCGAG 2421555 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || |||| ||| || | || || |||||||||| | | ||||| || ||| || Sbjct 2421554 AATGTCATCCGTGACGCCGTTACTTACACTGAGCACGCTAGAAGGAAGACGGTGACCGCC 2421495 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| | ||||| || ||||| | ||||| |||| | || ||||| ||| ||||| Sbjct 2421494 ATGGATGTTGTCTACGCTTTGAAGAGGCAAGGTCGTACTCTCTACGGTTTCGGAGGTTAA 2421435 Query 16700 TC 16701 || Sbjct 2421434 TC 2421433 >seq5 Length=26975502 Score = 159 bits (176), Expect = 5e-35 Identities = 181/243 (74%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||||||||||||||||||||| || || || | |||||||| | ||||||| Sbjct 24051719 GAGACAACATCCAAGGAATCACCAAGCCTGCGATTCGAAGATTGGCTCGTAGAGGTGGAG 24051778 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 |||||||| || ||| | |||| || |||| ||||| || | |||||||| ||| Sbjct 24051779 TCAAGCGTATCAGTGGTCTCATCTACGAGGAGACTCGTGGCGTCCTCAAGATCTTTCTCG 24051838 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| ||| || | ||||||| || || ||||||||||||| | |||||||| ||| Sbjct 24051839 AGAACGTGATTCGTGATGCTGTCACTTACACCGAGCACGCTAGGAGGAAGACTGTGACCG 24051898 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 |||||||| | ||||| || | || | ||||| | | |||| || || || ||| Sbjct 24051899 CCATGGATGTTGTCTACGCTCTCAAGAGGCAAGGAAGGACTCTTTACGGATTCGGTGGTT 24051958 Query 16698 AAT 16700 ||| Sbjct 24051959 AAT 24051961 Score = 147 bits (162), Expect = 3e-31 Identities = 152/199 (76%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||||||||||||||||||||| || || || | |||||||| | ||||||| Sbjct 24146593 GAGACAACATCCAAGGAATCACCAAGCCTGCCATTCGAAGATTGGCTCGTAGAGGTGGAG 24146534 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 |||||||| | ||| | |||| || |||| |||| || | |||||||| ||| Sbjct 24146533 TCAAGCGTATTAGTGGTCTCATCTACGAGGAGACACGTGGCGTCCTCAAGATCTTTCTCG 24146474 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| ||| || | ||||||| || || ||||||||||||| | |||||||| ||| Sbjct 24146473 AGAACGTAATTCGTGATGCTGTCACTTACACCGAGCACGCTAGGAGGAAGACTGTGACCG 24146414 Query 16638 CCATGGATATCGTCTATGC 16656 |||||||| | ||||| || Sbjct 24146413 CCATGGATGTTGTCTACGC 24146395 >seq2 Length=19698289 Score = 120 bits (132), Expect = 5e-23 Identities = 173/244 (71%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||| ||||||||||| |||||||| || |||||||| |||||| | || || | Sbjct 12329884 GAGACAACATTCAAGGAATCACAAAGCCAGCGATTCGTCGTCTTGCTCGTAGAGGAGGTG 12329825 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | ||| | || ||||||| |||||||||| | | | ||| |||||||| || || Sbjct 12329824 TGAAGAGAATCAGTGGATTGATCTATGAAGAAACGAGAGGTGTGTTGAAGATTTTTCTGG 12329765 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || || |||||| | || || ||||| || | | ||||| || || Sbjct 12329764 AGAATGTGATTAGAGATGCTGTTACTTACACTGAGCATGCGAGGAGGAAGACGGTGACTG 12329705 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 | |||||| | || ||||| ||||| | ||||| | | | ||||| ||||| ||| Sbjct 12329704 CTATGGATGTTGTTTATGCCTTGAAGAGACAAGGAAGAACTCTATATGGATTTGGTGGTT 12329645 Query 16698 AATC 16701 ||| Sbjct 12329644 GATC 12329641 >seq3 Length=23459830 Score = 113 bits (124), Expect = 7e-21 Identities = 166/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||||||||| || ||||| || || || |||||||| || | | || || | Sbjct 19912900 GAGACAACATCCAAGGGATTACCAAACCTGCGATTCGTCGTCTCGCGAGAAGAGGAGGCG 19912841 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| || ||| ||| |||||||||||| ||| | ||| | |||||||| ||| Sbjct 19912840 TGAAGCGTATCAGTGGTTTGATCTATGAAGAGACTCGCGGCGTTCTCAAGATCTTTCTCG 19912781 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| ||| || | ||| || | || || ||||||||| || || ||||| || Sbjct 19912780 AGAACGTGATTCGTGACGCCGTTACTTACACGGAGCACGCTCGCCGGAAAACTGTTACGG 19912721 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 | ||||| |||| || || | || | ||||| || | | ||||| || || Sbjct 19912720 CGATGGACGTCGTTTACGCTCTCAAGAGACAAGGACGAACTTTGTATGGATTCGG 19912666 Score = 98.7 bits (108), Expect = 2e-16 Identities = 141/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||||||||||||||| || || || || || | |||||||| | ||||| | Sbjct 16883460 GAGACAACATCCAAGGAATCACTAAACCGGCGATTCGGAGATTGGCTCGTAGAGGTGGTG 16883519 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | || ||| | ||| || |||| ||||||| |||| ||| | |||||||| | Sbjct 16883520 TTAAACGTATTAGTGGTCTGATCTACGAAGAGACACGTGGCGTTCTCAAGATCTTTTTGG 16883579 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| ||||||| ||| || | || || ||||||||| | ||||| || || Sbjct 16883580 AGAATGTTATCCGTGACGCCGTTACTTACACTGAGCACGCTCGGAGGAAGACGGTGACTG 16883639 Query 16638 CCATGGATATCGTCTATGC 16656 | |||||| | || ||||| Sbjct 16883640 CTATGGATGTTGTTTATGC 16883658 Score = 93.3 bits (102), Expect = 7e-15 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||||||||||||||| || || || || || | |||||||| | ||||| | Sbjct 17020284 GAGACAACATCCAAGGAATCACTAAACCGGCGATTCGGAGATTGGCTCGTAGAGGTGGTG 17020225 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | || ||| | ||| ||| |||| || |||| |||| ||| | |||||||| | Sbjct 17020224 TTAAACGTATTAGTGGTTTGATCTACGAGGAGACACGTGGCGTTCTCAAGATCTTTTTGG 17020165 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 | | ||||||| ||| || | || || ||||||||| | ||||| || || Sbjct 17020164 AAAATGTTATCCGTGACGCCGTTACTTACACTGAGCACGCTCGGAGGAAGACGGTGACTG 17020105 Query 16638 CCATGGATATCGTCTATGC 16656 | |||||| | || ||||| Sbjct 17020104 CTATGGATGTTGTTTATGC 17020086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075193599851