Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11]
7 sequences; 119,667,750 total letters
Query= NC_006820.1
Length=196280
Score E
Sequences producing significant alignments: (Bits) Value
seq7 594 6e-165
seq2 241 2e-58
seq6 232 8e-56
>seq7
Length=154478
Score = 594 bits (658), Expect = 6e-165
Identities = 711/958 (74%), Gaps = 8/958 (1%)
Strand=Plus/Minus
Query 135374 TTCTGCGAGTGGGTTACCAGCACCGACAACCGCCTCTATGTGGGTTGGTTTGGAACGCTG 135433
||||| | ||| | || ||||| || ||||| || || | || |||||||| ||
Sbjct 1396 TTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1337
Query 135434 ATGATTCCTACTCTTCTCG-CAGCTGCTATCTGCTTT-ATTGTTGCTTTCATCGCTGCAC 135491
||||| ||||| ||| | | | || || |||| ||| ||| | || ||||| ||||| |
Sbjct 1336 ATGATCCCTAC-CTTATTGACCGCAACT-TCTGTTTTTATTATCGCATTCATTGCTGCTC 1279
Query 135492 CTCCCGTCGATATTGACGGCATCCGCGAACCTGTTGCTGGTTCTCTAATGTACGGAAATA 135551
|||| || |||||||| || || || ||||||||| |||| ||||| | |||||||| |
Sbjct 1278 CTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACA 1219
Query 135552 ACATCATCTCTGGTGCTGTTATCCCTTCTA--GCAACGCCATCGGCCTTCACTTCTATCC 135609
| || || || ||||| |||| ||| || ||| || || || | || || || ||
Sbjct 1218 ATATTATTTCCGGTGCCATTATTCCTACTTCTGCA--GCTATTGGATTGCATTTTTACCC 1161
Query 135610 CATCTGGGAAGCTGCTTCTCTTGATGAGTGGCTATATAATGGTGGTCCTTATCAACTAGT 135669
|||||||||||||| || ||||||| |||||||| || || ||||||||| ||||| |
Sbjct 1160 AATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAAT 1101
Query 135670 GGTCTTCCACTTCCTTATCGGTGTCTTCTCTTACATGGGTCGCGAGTGGGAACTCTCTTA 135729
|| | ||||| | | ||||| | ||| |||||||| ||||||||||| ||
Sbjct 1100 TGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTT 1041
Query 135730 CCGACTGGGTATGCGCCCTTGGATTTGTGTCGCTTACTCAGCCCCTGTTGCCGCTGCTAC 135789
||| ||||||||||| ||||||||| ||| || || ||||| |||||||| ||||| ||
Sbjct 1040 CCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGAC 981
Query 135790 TGCTGTTTTCCTGGTCTACCCCTTTGGACAAGGTTCTTTCAGTGATGGTATGCCGCTTGG 135849
|||||||||| || |||| || |||| || || ||| |||||||||||| || ||
Sbjct 980 TGCTGTTTTCTTGATCTATCCAATTGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGG 921
Query 135850 CATTTCTGGAACTTTTAACTACATGCTTGTTTTCCAGGCAGAACACAACATTCTCATGCA 135909
|| ||||| ||||| |||| ||| |||| |||||||| || ||||||||||| |||||
Sbjct 920 AATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCA 861
Query 135910 TCCTTTCCACATGTTGGGAGTTGCTGGGGTCTTCGGTGGTTCTCTGTTCTCTGCTATGCA 135969
|| || |||||||| || || ||||| || ||||| || || || || |||||||||
Sbjct 860 CCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTTTTTAGTGCTATGCA 801
Query 135970 TGGATCTCTTGTCACCTCTAGTCTTGTACGTGAGACGACTGAGGTAGAATCCCAGAACTA 136029
||| || | || || |||||| | | | || || || || ||||| || |
Sbjct 800 TGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGA 741
Query 136030 TGGTTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGTTACTT 136089
||||||| ||||| ||||||||||| |||||||||||||| |||||||| ||||| ||
Sbjct 740 AGGTTACAGATTCGGGCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTT 681
Query 136090 CGGTCGTCTGATCTTCCAATATGCGTCGTTCAACAACTCTCGTTCGCTACACTTTTTCCT 136149
|| || |||| ||||||||||| |||||||| |||||||| |||| || ||| |
Sbjct 680 TGGCCGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTT 621
Query 136150 TGCTGCTTGGCCTGTTGTCGGTATCTGGTTTGCTGCCCTGGGCGTATCTACGATGGCGTT 136209
|| |||||||| || || ||||| |||||| |||| | || | ||| ||||| ||
Sbjct 620 AGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTT 561
Query 136210 CAACCTCAATGGATTCAACTTCAACCAGTCCATTGTATCTTCTGAAGGTCGTGTACTCAA 136269
|||||| ||||| ||||| |||||||| || | || | | |||| ||||| | ||
Sbjct 560 CAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAA 501
Query 136270 CACCTGGGCAGATGTGCTGAATCGTGCTGGTCTGGGTATGGAGGTGATGCACGAGCGT 136327
|| ||||| ||| | | || |||||| || |||||||| || ||||| || |||
Sbjct 500 TACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGT 443
Score = 587 bits (650), Expect = 1e-162
Identities = 739/1009 (73%), Gaps = 12/1009 (1%)
Strand=Plus/Plus
Query 137875 TGGATGACTGGATTAAACGAGATCGCTTTGTATTTGTGGGTTGGTCTGGACTACTACTTT 137934
||||||||||| | | || ||||| || ||||| ||||||||||| ||| | || |
Sbjct 32766 TGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCT 32825
Query 137935 TTCCCACTGCTTATTTGGCCCTTGGTGGCTGGCTTACTGGCACAACGTTTGTTACAAGCT 137994
|||| ||| ||||| || | || || ||| | || || ||||| ||||| || |
Sbjct 32826 TTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCAT 32885
Query 137995 GGTACACCCACGGGTTGGCGTCTAGTTATCTTGAAGGCGCTAATTTCCTCACAGCAGCTG 138054
|||| || || || ||||| | ||| | ||||| ||||| | || || || |
Sbjct 32886 GGTATACTCATGGATTGGCCAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAG 32945
Query 138055 TTTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 138114
|||| ||||||||| || | | | |||||| | | |||| ||||||||||| | |
Sbjct 32946 TTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCAC 33005
Query 138115 AAGGAGATATCGTCCGCTGGTTCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACG 138174
|||||||| | || |||| ||| | || || || ||| ||||||| || |||||||
Sbjct 33006 AAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTATGGGCTTTTGTTGCTCTCCACG 33065
Query 138175 GGGCCTTTAGTCTGATTGGATTCATGCTTCGCCAGTTTGAGATCTCTCG-TCTGGTAGGC 138233
| || || | || || || ||| | || || ||||| | |||| |||| | |
Sbjct 33066 GCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTT---C 33122
Query 138234 A--TCCGTCCCTACAACGCAATCGCATTCTCTGGTCCCATCGCTGTGTTCGTCAGCGTGT 138291
| | || || || || ||||||||||||||||||||||| ||||| || || || |
Sbjct 33123 AATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCCATTGCTGTTTTTGTTTCTGTCT 33182
Query 138292 TCCTGATGTATCCTTTGGGTCAATCCAGTTGGTTCTTTGCTCCCTCCTTTGGTGTGGCAG 138351
|||| || ||||| | |||||||| ||||||||||||| || |||||||| || |
Sbjct 33183 TCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGG 33242
Query 138352 CAATCTTCCGAT---TCCTGTTGTTCCTTCAGGGTTTCCATAACTGGACCCTCAACCCCT 138408
| || || |||| |||| || |||| ||||||| ||||| ||||| | ||||| |
Sbjct 33243 CTATATTTCGATTCATCCTCTTTTTCC--AAGGGTTT-CATAATTGGACATTGAACCCAT 33299
Query 138409 TTCATATGATGGGCGTAGCAGGTATTCTTGGTGGTGCTCTGCTCTGTGCTATTCATGGTG 138468
||||||||||||| || || ||| | || || | |||||||| || |||||||||||||
Sbjct 33300 TTCATATGATGGGAGTCGCCGGTGTACTGGGCGCGGCTCTGCTATGCGCTATTCATGGTG 33359
Query 138469 CTACAGTAGAAAATACTTTGTATGAAGATGGCGAACAATCAAATACTTTTAAAGCATTTG 138528
|||| |||||||||||||| | ||||||||| || ||||||| || || |||
Sbjct 33360 CTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTA 33419
Query 138529 AACCTACTCAAGAAGAAGAAACCTATTCAATGGTTACTGCTAACCGTTACTGGTCGCAAA 138588
| || ||||||| |||||||| ||||||||||| || |||||||| | ||||| ||||
Sbjct 33420 ACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAA 33479
Query 138589 TCTTTGGAATTGCTTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCCG 138648
||||||| |||||||| ||||| |||||| | || ||||||||| | ||||| || |
Sbjct 33480 TCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCGG 33539
Query 138649 TCATGGGTCTCTGGACTAGTAGTATTGGTATTATTGGTCTTGCTCTTAACCTACGAGCGT 138708
| | ||| | |||| ||| | |||| | | ||| | ||| | |||||||| || |
Sbjct 33540 TAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTTTAGCTTTGAACCTACGTGCCT 33599
Query 138709 ATGATTTCGTATCGCAAGAAATTCGTGCAGCAGAAGATCCTGAATTCGAGACCTTCTACA 138768
|||| ||||| || || ||||| |||||||| |||||||| ||||| ||||| ||||| |
Sbjct 33600 ATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCAGAATTTGAGACTTTCTATA 33659
Query 138769 CCAAGAACATTCTTCTGAATGAAGGTCTGCGTGCCTGGATGGCTCCTGTGGATCAACCTC 138828
| || || |||||| | || |||||| | ||||| |||||||| || ||||| ||||
Sbjct 33660 CTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTC 33719
Query 138829 ACGAAAACTTTGTTTTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 138877
| |||||| || | || ||||| || || | ||| | || ||||||||
Sbjct 33720 ATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 33768
>seq2
Length=19698289
Score = 241 bits (266), Expect = 2e-58
Identities = 323/448 (72%), Gaps = 10/448 (2%)
Strand=Plus/Minus
Query 135881 TTCCAGGCAGAACACAACATTCTCATGCATCCTTTCCACATGTTGGGAGTTGCTGGGGTC 135940
|||||||| || ||||||||||| ||||| || || |||||||| || || ||||| ||
Sbjct 3332065 TTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 3332006
Query 135941 TTCGGTGGTTCTCTGTTCTCTGCTATGCATGGATCTCTTG-TCACCTCTAGTCTTGTACG 135999
||||| || || || || |||||| ||||| | |||| | || |||||| | | |
Sbjct 3332005 TTCGGCGGCTCCCTATTTAGTGCTATACATGGGTTCCTTGGTAACTTCTAGTTTGATCAG 3331946
Query 136000 TGAGACGACTGAGGTAGAATCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGAC 136059
|| || | || ||||| || | ||||||| ||||||||||||||| | ||
Sbjct 3331945 GGAAACCATAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAATAAAC 3331886
Query 136060 TTACAACATTGTTGCTGCTCATGGTTACTTCGGTCGTCTGATCTTCCAATATGCGTCGTT 136119
|||||||||||| |||||||||||||| || || || |||||||| ||| ||
Sbjct 3331885 TTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTC-------CGT--TT 3331835
Query 136120 CAACAACTCTCGTTCGCTACACTTTTTCCTTGCTGCTTGGCCTGTTGTCGGTATCTGGTT 136179
|||||| |||||||| |||| || ||| | || |||||||| || || ||||| |||||
Sbjct 3331834 CAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTT 3331775
Query 136180 TGCTGCCCTGGGCGTATCTACGATGGCGTTCAACCTCAATGGATTCAACTTCAACCAGTC 136239
| |||| | || | || ||||| |||||||| ||||| || || |||||||| ||
Sbjct 3331774 TACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTAAATTTCAACCAATC 3331715
Query 136240 CATTGTATCTTCTGAAGGTCGTGTACTCAACACCTGGGCAGATGTGCTGAATCGTGCTGG 136299
| || | | |||| ||||| | || || ||||| ||| | | || ||||||
Sbjct 3331714 AGTAGTTGATAGTCAAGGGCGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAA 3331655
Query 136300 TCTGGGTATGGAGGTGATGCACGAGCGT 136327
| ||||| || || ||||| || |||
Sbjct 3331654 CTTTGGTATAGAAGTTATGCATGAACGT 3331627
Score = 107 bits (118), Expect = 2e-18
Identities = 85/102 (83%), Gaps = 0/102 (0%)
Strand=Plus/Minus
Query 138681 ATTGGTCTTGCTCTTAACCTACGAGCGTATGATTTCGTATCGCAAGAAATTCGTGCAGCA 138740
|| ||||| ||||| |||||||| || ||||| ||||| || || ||||| ||| ||||
Sbjct 3492728 ATCGGTCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTACAGCG 3492669
Query 138741 GAAGATCCTGAATTCGAGACCTTCTACACCAAGAACATTCTT 138782
|||||||||||||| ||||| ||||||||||| || |||||
Sbjct 3492668 GAAGATCCTGAATTTGAGACTTTCTACACCAAAAATCTTCTT 3492627
>seq6
Length=366924
Score = 232 bits (256), Expect = 8e-56
Identities = 321/448 (72%), Gaps = 10/448 (2%)
Strand=Plus/Plus
Query 135881 TTCCAGGCAGAACACAACATTCTCATGCATCCTTTCCACATGTTGGGAGTTGCTGGGGTC 135940
|||||||| || ||| |||||| ||||| || || |||||||| || || ||||| ||
Sbjct 334345 TTCCAGGCTGAGCACTTCATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 334404
Query 135941 TTCGGTGGTTCTCTGTTCTCTGCTATGCATGGATCTCTTG-TCACCTCTAGTCTTGTACG 135999
||||| || || || || |||||| ||||| | |||| | || |||||| | | |
Sbjct 334405 TTCGGCGGCTCCCTATTTAGTGCTATACATGGGTTCCTTGGTAACTTCTAGTTTGATCAG 334464
Query 136000 TGAGACGACTGAGGTAGAATCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGAC 136059
|| || | || ||||| || | ||||||| ||||||||||||||| | ||
Sbjct 334465 GGAAACCATAGAAAATGAATCTGCTAATCAAGGTTACAGATTCGGTCAAGAAGAATAAAC 334524
Query 136060 TTACAACATTGTTGCTGCTCATGGTTACTTCGGTCGTCTGATCTTCCAATATGCGTCGTT 136119
|||||||||||| |||||||||||||| || || || |||||||| ||| ||
Sbjct 334525 TTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTC-------CGT--TT 334575
Query 136120 CAACAACTCTCGTTCGCTACACTTTTTCCTTGCTGCTTGGCCTGTTGTCGGTATCTGGTT 136179
|||||| |||||||| |||| || ||| | || |||||||| || || ||||| |||||
Sbjct 334576 CAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTT 334635
Query 136180 TGCTGCCCTGGGCGTATCTACGATGGCGTTCAACCTCAATGGATTCAACTTCAACCAGTC 136239
| |||| | || | || ||||| |||||||| ||||| || || |||||||| ||
Sbjct 334636 TACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTAAATTTCAACCAATC 334695
Query 136240 CATTGTATCTTCTGAAGGTCGTGTACTCAACACCTGGGCAGATGTGCTGAATCGTGCTGG 136299
| || | | |||| ||||| | || || ||||| ||| | | || ||||||
Sbjct 334696 AGTAGTTGATAGTCAAGGGCGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAA 334755
Query 136300 TCTGGGTATGGAGGTGATGCACGAGCGT 136327
| ||||| || || ||||| || |||
Sbjct 334756 CTTTGGTATAGAAGTTATGCATGAACGT 334783
Score = 107 bits (118), Expect = 2e-18
Identities = 85/102 (83%), Gaps = 0/102 (0%)
Strand=Plus/Minus
Query 138681 ATTGGTCTTGCTCTTAACCTACGAGCGTATGATTTCGTATCGCAAGAAATTCGTGCAGCA 138740
|| ||||| ||||| |||||||| || ||||| ||||| || || ||||| ||| ||||
Sbjct 102176 ATCGGTCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTACAGCG 102117
Query 138741 GAAGATCCTGAATTCGAGACCTTCTACACCAAGAACATTCTT 138782
|||||||||||||| ||||| ||||||||||| || |||||
Sbjct 102116 GAAGATCCTGAATTTGAGACTTTCTACACCAAAAATCTTCTT 102075
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 627967945052800
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