Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq7 572 5e-159 seq2 253 6e-63 seq6 244 3e-60 >seq7 Length=154478 Score = 572 bits (634), Expect = 5e-159 Identities = 727/995 (73%), Gaps = 4/995 (0%) Strand=Plus/Minus Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349 || ||| | ||| | || || || || ||||| ||||| | || |||||||| || | Sbjct 1396 TTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1337 Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCG 19409 ||||| ||| |||| | | || ||| || ||||| |||| || || || || || Sbjct 1336 ATGATCCCTACCTTATTGACCGCAACTTCTGTTTTTATTATCGCATTCATTGCTGCTCCT 1277 Query 19410 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 19469 || |||||||| ||||| || ||||| || ||||| || || | | |||||||||||| Sbjct 1276 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 1217 Query 19470 ATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATC 19529 |||||||| || || | |||| | || || || ||| |||| ||||| || ||| Sbjct 1216 ATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATTGGATTGCATTTTTACCCAATC 1157 Query 19530 TGGGAAGCCGGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTC 19589 |||||||| | | | ||||| ||| |||||||||||||||| ||| |||| |||| Sbjct 1156 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGTT 1097 Query 19590 TTCCACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGA 19649 | ||||| ||| | || ||||| || ||| | |||||||||| || | | Sbjct 1096 CTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 1037 Query 19650 TTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCT 19709 | || ||| | || ||||| || |||||| |||| || | |||| || |||| Sbjct 1036 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGCT 977 Query 19710 GTGTTTCTCGTT-TACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTAT 19768 || ||||| | | || ||| |||| || || |||||| ||||||||||||||| || || Sbjct 976 GT-TTTCTTGATCTATCCAATTGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 918 Query 19769 CTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCC 19828 |||||||||||| ||||||||| | |||||||| || || ||||| || |||||||| || Sbjct 917 CTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCC 858 Query 19829 GTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGG 19888 || |||||| | ||||| ||||| |||||||| || || ||||| ||||||||| || Sbjct 857 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTTTTTAGTGCTATGCATGG 798 Query 19889 AAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGG 19948 ||||| ||||| | |||| |||||| || || ||| ||| || | || Sbjct 797 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 738 Query 19949 CTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGG 20008 || | ||||||||||| ||||| || || || ||||| ||||| ||||| || ||||| Sbjct 737 TTACAGATTCGGGCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGG 678 Query 20009 GAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGC 20068 ||||||| || ||||||||| |||||| ||||||||||||||||||||||| | || Sbjct 677 CCGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGC 618 Query 20069 TACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAA 20128 ||| || || || || || ||| |||| | | || || | |||||||||||||| Sbjct 617 GGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAA 558 Query 20129 CCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGAT-GTCAACGGAAAGATAATCCCAA 20187 ||| |||||||| || || ||||| |||||||||||| ||||| ||| | || | Sbjct 557 CCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAA-GGACGTGTTATTAATA 499 Query 20188 CATGGGCTGATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATG 20247 | ||||||||| | | || | |||||||| || | ||||||||||| || || |||| Sbjct 498 CTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 439 Query 20248 CTCATAACTTCCCACTTGATTTAGCTTCGGCTGAG 20282 |||| |||||||| || || ||||| | | |||| Sbjct 438 CTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 404 >seq2 Length=19698289 Score = 253 bits (280), Expect = 6e-63 Identities = 353/492 (72%), Gaps = 16/492 (3%) Strand=Plus/Minus Query 19795 TATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGCG 19854 ||||||| || || ||||| || |||||||| || || |||||| | ||||| ||||| | Sbjct 3332067 TATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTG 3332008 Query 19855 TATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTT---TGGTTACTTCCTCGATCA 19911 ||||||| || || || || |||||| || || ||| |||| ||||| | | Sbjct 3332007 TATTCGGCGGCTCCCTATTTAGTGCTATACATGG--GTTCCTTGGTAACTTCTAGTTTGA 3331950 Query 19912 TCAAGGAAACAACTGAGGATGTATCGCAGAACTATGGCTATAAGTTCGGGCAAGATGAAG 19971 ||| |||||| | || ||| ||| || | || || | ||||| ||||| ||| Sbjct 3331949 TCAGGGAAACCATAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAAT 3331890 Query 19972 AGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGATATTTCAATATGCTT 20031 | || || || ||||| ||||| || || || ||||| ||||||| || | Sbjct 3331889 AAACTTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCG-------- 3331838 Query 20032 CTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTCCCCGTGGTTGGCATAT 20091 |||||| ||||||||||||||||||||||| | || ||| || || || || || | Sbjct 3331837 -TTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTT 3331779 Query 20092 GGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAATGGTTTTAACTTTAACC 20151 || |||| | | || || ||||||||||||||||||| |||||||| || || |||| Sbjct 3331778 GGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTAAATTTCAACC 3331719 Query 20152 AGTCAGTAGTTGAT-GTCAACGGAAAGATAATCCCAACATGGGCTGATGTATTAAATAGA 20210 | |||||||||||| ||||| || | | || || ||||||||| | | || | Sbjct 3331718 AATCAGTAGTTGATAGTCAAGGGCGTG-TTATTAATACTTGGGCTGATATTATTAACCGT 3331660 Query 20211 GCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATGCTCATAACTTCCCACTTGATTTA 20270 |||||| | || | ||||||||||| || || |||||||| |||||||| || || || Sbjct 3331659 GCTAACTTTGGTATAGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTA 3331600 Query 20271 GCTTCGGCTGAG 20282 ||| | | |||| Sbjct 3331599 GCTGCTGTTGAG 3331588 >seq6 Length=366924 Score = 244 bits (270), Expect = 3e-60 Identities = 351/492 (71%), Gaps = 16/492 (3%) Strand=Plus/Plus Query 19795 TATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGCG 19854 ||||||| || || ||| || |||||||| || || |||||| | ||||| ||||| | Sbjct 334343 TATTCCAGGCTGAGCACTTCATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTG 334402 Query 19855 TATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTT---TGGTTACTTCCTCGATCA 19911 ||||||| || || || || |||||| || || ||| |||| ||||| | | Sbjct 334403 TATTCGGCGGCTCCCTATTTAGTGCTATACATGG--GTTCCTTGGTAACTTCTAGTTTGA 334460 Query 19912 TCAAGGAAACAACTGAGGATGTATCGCAGAACTATGGCTATAAGTTCGGGCAAGATGAAG 19971 ||| |||||| | || ||| ||| || | || || | ||||| ||||| ||| Sbjct 334461 TCAGGGAAACCATAGAAAATGAATCTGCTAATCAAGGTTACAGATTCGGTCAAGAAGAAT 334520 Query 19972 AGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGATATTTCAATATGCTT 20031 | || || || ||||| ||||| || || || ||||| ||||||| || | Sbjct 334521 AAACTTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCG-------- 334572 Query 20032 CTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTCCCCGTGGTTGGCATAT 20091 |||||| ||||||||||||||||||||||| | || ||| || || || || || | Sbjct 334573 -TTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTT 334631 Query 20092 GGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAATGGTTTTAACTTTAACC 20151 || |||| | | || || ||||||||||||||||||| |||||||| || || |||| Sbjct 334632 GGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTAAATTTCAACC 334691 Query 20152 AGTCAGTAGTTGAT-GTCAACGGAAAGATAATCCCAACATGGGCTGATGTATTAAATAGA 20210 | |||||||||||| ||||| || | | || || ||||||||| | | || | Sbjct 334692 AATCAGTAGTTGATAGTCAAGGGCGTG-TTATTAATACTTGGGCTGATATTATTAACCGT 334750 Query 20211 GCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATGCTCATAACTTCCCACTTGATTTA 20270 |||||| | || | ||||||||||| || || |||||||| |||||||| || || || Sbjct 334751 GCTAACTTTGGTATAGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTA 334810 Query 20271 GCTTCGGCTGAG 20282 ||| | | |||| Sbjct 334811 GCTGCTGTTGAG 334822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144441587993292