Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11]
7 sequences; 119,667,750 total letters
Query= NC_006882.2
Length=45176
Score E
Sequences producing significant alignments: (Bits) Value
seq7 572 5e-159
seq2 253 6e-63
seq6 244 3e-60
>seq7
Length=154478
Score = 572 bits (634), Expect = 5e-159
Identities = 727/995 (73%), Gaps = 4/995 (0%)
Strand=Plus/Minus
Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349
|| ||| | ||| | || || || || ||||| ||||| | || |||||||| || |
Sbjct 1396 TTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1337
Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCG 19409
||||| ||| |||| | | || ||| || ||||| |||| || || || || ||
Sbjct 1336 ATGATCCCTACCTTATTGACCGCAACTTCTGTTTTTATTATCGCATTCATTGCTGCTCCT 1277
Query 19410 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 19469
|| |||||||| ||||| || ||||| || ||||| || || | | ||||||||||||
Sbjct 1276 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 1217
Query 19470 ATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATC 19529
|||||||| || || | |||| | || || || ||| |||| ||||| || |||
Sbjct 1216 ATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATTGGATTGCATTTTTACCCAATC 1157
Query 19530 TGGGAAGCCGGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTC 19589
|||||||| | | | ||||| ||| |||||||||||||||| ||| |||| ||||
Sbjct 1156 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGTT 1097
Query 19590 TTCCACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGA 19649
| ||||| ||| | || ||||| || ||| | |||||||||| || | |
Sbjct 1096 CTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 1037
Query 19650 TTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCT 19709
| || ||| | || ||||| || |||||| |||| || | |||| || ||||
Sbjct 1036 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGCT 977
Query 19710 GTGTTTCTCGTT-TACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTAT 19768
|| ||||| | | || ||| |||| || || |||||| ||||||||||||||| || ||
Sbjct 976 GT-TTTCTTGATCTATCCAATTGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 918
Query 19769 CTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCC 19828
|||||||||||| ||||||||| | |||||||| || || ||||| || |||||||| ||
Sbjct 917 CTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCC 858
Query 19829 GTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGG 19888
|| |||||| | ||||| ||||| |||||||| || || ||||| ||||||||| ||
Sbjct 857 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTTTTTAGTGCTATGCATGG 798
Query 19889 AAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGG 19948
||||| ||||| | |||| |||||| || || ||| ||| || | ||
Sbjct 797 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 738
Query 19949 CTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGG 20008
|| | ||||||||||| ||||| || || || ||||| ||||| ||||| || |||||
Sbjct 737 TTACAGATTCGGGCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGG 678
Query 20009 GAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGC 20068
||||||| || ||||||||| |||||| ||||||||||||||||||||||| | ||
Sbjct 677 CCGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGC 618
Query 20069 TACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAA 20128
||| || || || || || ||| |||| | | || || | ||||||||||||||
Sbjct 617 GGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAA 558
Query 20129 CCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGAT-GTCAACGGAAAGATAATCCCAA 20187
||| |||||||| || || ||||| |||||||||||| ||||| ||| | || |
Sbjct 557 CCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAA-GGACGTGTTATTAATA 499
Query 20188 CATGGGCTGATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATG 20247
| ||||||||| | | || | |||||||| || | ||||||||||| || || ||||
Sbjct 498 CTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 439
Query 20248 CTCATAACTTCCCACTTGATTTAGCTTCGGCTGAG 20282
|||| |||||||| || || ||||| | | ||||
Sbjct 438 CTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 404
>seq2
Length=19698289
Score = 253 bits (280), Expect = 6e-63
Identities = 353/492 (72%), Gaps = 16/492 (3%)
Strand=Plus/Minus
Query 19795 TATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGCG 19854
||||||| || || ||||| || |||||||| || || |||||| | ||||| ||||| |
Sbjct 3332067 TATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTG 3332008
Query 19855 TATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTT---TGGTTACTTCCTCGATCA 19911
||||||| || || || || |||||| || || ||| |||| ||||| | |
Sbjct 3332007 TATTCGGCGGCTCCCTATTTAGTGCTATACATGG--GTTCCTTGGTAACTTCTAGTTTGA 3331950
Query 19912 TCAAGGAAACAACTGAGGATGTATCGCAGAACTATGGCTATAAGTTCGGGCAAGATGAAG 19971
||| |||||| | || ||| ||| || | || || | ||||| ||||| |||
Sbjct 3331949 TCAGGGAAACCATAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAAT 3331890
Query 19972 AGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGATATTTCAATATGCTT 20031
| || || || ||||| ||||| || || || ||||| ||||||| || |
Sbjct 3331889 AAACTTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCG-------- 3331838
Query 20032 CTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTCCCCGTGGTTGGCATAT 20091
|||||| ||||||||||||||||||||||| | || ||| || || || || || |
Sbjct 3331837 -TTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTT 3331779
Query 20092 GGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAATGGTTTTAACTTTAACC 20151
|| |||| | | || || ||||||||||||||||||| |||||||| || || ||||
Sbjct 3331778 GGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTAAATTTCAACC 3331719
Query 20152 AGTCAGTAGTTGAT-GTCAACGGAAAGATAATCCCAACATGGGCTGATGTATTAAATAGA 20210
| |||||||||||| ||||| || | | || || ||||||||| | | || |
Sbjct 3331718 AATCAGTAGTTGATAGTCAAGGGCGTG-TTATTAATACTTGGGCTGATATTATTAACCGT 3331660
Query 20211 GCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATGCTCATAACTTCCCACTTGATTTA 20270
|||||| | || | ||||||||||| || || |||||||| |||||||| || || ||
Sbjct 3331659 GCTAACTTTGGTATAGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTA 3331600
Query 20271 GCTTCGGCTGAG 20282
||| | | ||||
Sbjct 3331599 GCTGCTGTTGAG 3331588
>seq6
Length=366924
Score = 244 bits (270), Expect = 3e-60
Identities = 351/492 (71%), Gaps = 16/492 (3%)
Strand=Plus/Plus
Query 19795 TATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGCG 19854
||||||| || || ||| || |||||||| || || |||||| | ||||| ||||| |
Sbjct 334343 TATTCCAGGCTGAGCACTTCATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTG 334402
Query 19855 TATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTT---TGGTTACTTCCTCGATCA 19911
||||||| || || || || |||||| || || ||| |||| ||||| | |
Sbjct 334403 TATTCGGCGGCTCCCTATTTAGTGCTATACATGG--GTTCCTTGGTAACTTCTAGTTTGA 334460
Query 19912 TCAAGGAAACAACTGAGGATGTATCGCAGAACTATGGCTATAAGTTCGGGCAAGATGAAG 19971
||| |||||| | || ||| ||| || | || || | ||||| ||||| |||
Sbjct 334461 TCAGGGAAACCATAGAAAATGAATCTGCTAATCAAGGTTACAGATTCGGTCAAGAAGAAT 334520
Query 19972 AGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGATATTTCAATATGCTT 20031
| || || || ||||| ||||| || || || ||||| ||||||| || |
Sbjct 334521 AAACTTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCG-------- 334572
Query 20032 CTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTCCCCGTGGTTGGCATAT 20091
|||||| ||||||||||||||||||||||| | || ||| || || || || || |
Sbjct 334573 -TTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTT 334631
Query 20092 GGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAATGGTTTTAACTTTAACC 20151
|| |||| | | || || ||||||||||||||||||| |||||||| || || ||||
Sbjct 334632 GGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTAAATTTCAACC 334691
Query 20152 AGTCAGTAGTTGAT-GTCAACGGAAAGATAATCCCAACATGGGCTGATGTATTAAATAGA 20210
| |||||||||||| ||||| || | | || || ||||||||| | | || |
Sbjct 334692 AATCAGTAGTTGATAGTCAAGGGCGTG-TTATTAATACTTGGGCTGATATTATTAACCGT 334750
Query 20211 GCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATGCTCATAACTTCCCACTTGATTTA 20270
|||||| | || | ||||||||||| || || |||||||| |||||||| || || ||
Sbjct 334751 GCTAACTTTGGTATAGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTA 334810
Query 20271 GCTTCGGCTGAG 20282
||| | | ||||
Sbjct 334811 GCTGCTGTTGAG 334822
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 144441587993292
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |