Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq7 482 4e-131 seq2 237 3e-57 seq6 228 1e-54 seq1 134 2e-26 seq3 91.5 2e-13 >seq7 Length=154478 Score = 482 bits (534), Expect = 4e-131 Identities = 677/945 (72%), Gaps = 4/945 (0%) Strand=Plus/Minus Query 211610 TTGGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATC 211668 |||| |||||||||||| | |||||||| | ||| | | | ||||| | ||||| Sbjct 1356 TTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACCGCAACTTCTGTTTTTATT 1298 Query 211669 GTAGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGT 211728 | |||||||| || || ||||| || ||||| || || || |||||||| || |||| Sbjct 1297 ATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGA 1238 Query 211729 TCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATC 211788 || | | || || ||||| || || || ||||| || |||| |||| || || Sbjct 1237 TCTCTTCTTTACGGAAACAATATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATT 1178 Query 211789 GGTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGT 211848 || || || || || || ||||||||||| ||| | ||||||| ||||| ||||| || Sbjct 1177 GGATTGCATTTTTACCCAATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGC 1118 Query 211849 GGTCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGA 211908 |||||||| | | | | | ||||| | | || | | || ||||| | Sbjct 1117 GGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGT 1058 Query 211909 CAGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCA 211968 ||||||||||| | |||| | ||||||||||||||||| |||||| |||||||| Sbjct 1057 GAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCT 998 Query 211969 CCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCA 212028 ||||| |||| || ||||| ||| | | || ||| | |||||||| || || Sbjct 997 CCTGTTGCAGCTGCGACTGCTGTTTTCTTGATCTATCCAATTGGTCAGGGAAGTTTTTCT 938 Query 212029 GACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAA 212088 || ||||||||| |||| || || || || |||||||| ||| | |||||||| || || Sbjct 937 GATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAG 878 Query 212089 CATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCA 212148 || ||||| |||||||||||||| || ||| |||||| || ||| | ||||| || | Sbjct 877 CACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCC 818 Query 212149 TTATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGT 212208 | || ||||||||| ||||| | || || ||| | ||| | |||||||| | Sbjct 817 CTTTTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAA 758 Query 212209 TTAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTT 212268 || || || | ||||||| ||||| ||||||||||| || || ||||| || Sbjct 757 AATGAATCTGCTAATGAAGGTTACAGATTCGGGCAAGAAGAAGAAACTTACAACATTGTA 698 Query 212269 GCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGA 212328 ||||| || || || || || || | || ||||| ||||| |||||||| | Sbjct 697 GCTGCTCACGGTTATTTTGGCCGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCGT 638 Query 212329 AGTTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGT 212388 |||||| |||||| | || | ||||| || | || | ||||| || || | ||| Sbjct 637 TCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGT 578 Query 212389 ATCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCA 212448 || | || ||||| |||||||||||||| ||||| |||||||||||||| |||||| Sbjct 577 ATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAG- 519 Query 212449 TCAGGTAAG-GTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGA 212507 ||| | | | ||| || |||||||| |||| || ||||| | || |||||||||||||| Sbjct 518 TCAAGGACGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGA 459 Query 212508 AGTTATGCACGAAAGAAATGCACACAACTTCCCACTTGACTTAGC 212552 ||||||||| ||| | ||||| ||||||||||| || ||| |||| Sbjct 458 AGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 414 >seq2 Length=19698289 Score = 237 bits (262), Expect = 3e-57 Identities = 341/479 (71%), Gaps = 10/479 (2%) Strand=Plus/Minus Query 212075 TATTCCAAGCAGAACATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTA 212134 ||||||| || || || ||||| |||||||||||||| || ||| |||||| || ||| Sbjct 3332067 TATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTG 3332008 Query 212135 TGTTCGGTGGAGCATTATTCTCTGCTATGCACGGTTCTCTTGTTA-CATCTTCACTTATC 212193 | ||||| || | |||| |||||| || || | |||| || | ||| | ||| Sbjct 3332007 TATTCGGCGGCTCCCTATTTAGTGCTATACATGGGTTCCTTGGTAACTTCTAGTTTGATC 3331948 Query 212194 CGTGAAACCACTGGTTTAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAG 212253 | ||||||| | || || || | ||||||| ||||| ||||||||| | Sbjct 3331947 AGGGAAACCATAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAATAA 3331888 Query 212254 ACATATAACATCGTTGCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCA 212313 || || ||||| || ||||| ||||| || || || || | ||||||| || Sbjct 3331887 ACTTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCC-GT-------- 3331837 Query 212314 TTCAACAACAGCAGAAGTTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGG 212373 |||||||| | |||||| |||||| | || | ||||| || | || | ||| Sbjct 3331836 TTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGG 3331777 Query 212374 TTAACCTCTATGGGTATCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAA 212433 || || || | ||||| |||| ||||| |||||||||||||| || || ||||||||| Sbjct 3331776 TTTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTAAATTTCAACCAA 3331717 Query 212434 TCAGTTGTTGATGCATCAGGTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCA 212493 ||||| |||||| ||| ||| || |||||||| |||| || ||||| | || Sbjct 3331716 TCAGTAGTTGATAGTCAAGGGCGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCT 3331657 Query 212494 AACCTTGGTATGGAAGTTATGCACGAAAGAAATGCACACAACTTCCCACTTGACTTAGC 212552 ||| ||||||| ||||||||||| ||| | ||||| ||||||||||| || ||| |||| Sbjct 3331656 AACTTTGGTATAGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 3331598 >seq6 Length=366924 Score = 228 bits (252), Expect = 1e-54 Identities = 339/479 (71%), Gaps = 10/479 (2%) Strand=Plus/Plus Query 212075 TATTCCAAGCAGAACATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTA 212134 ||||||| || || || ||| |||||||||||||| || ||| |||||| || ||| Sbjct 334343 TATTCCAGGCTGAGCACTTCATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTG 334402 Query 212135 TGTTCGGTGGAGCATTATTCTCTGCTATGCACGGTTCTCTTGTTA-CATCTTCACTTATC 212193 | ||||| || | |||| |||||| || || | |||| || | ||| | ||| Sbjct 334403 TATTCGGCGGCTCCCTATTTAGTGCTATACATGGGTTCCTTGGTAACTTCTAGTTTGATC 334462 Query 212194 CGTGAAACCACTGGTTTAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAG 212253 | ||||||| | || || || | ||||||| ||||| ||||||||| | Sbjct 334463 AGGGAAACCATAGAAAATGAATCTGCTAATCAAGGTTACAGATTCGGTCAAGAAGAATAA 334522 Query 212254 ACATATAACATCGTTGCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCA 212313 || || ||||| || ||||| ||||| || || || || | ||||||| || Sbjct 334523 ACTTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCC-GT-------- 334573 Query 212314 TTCAACAACAGCAGAAGTTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGG 212373 |||||||| | |||||| |||||| | || | ||||| || | || | ||| Sbjct 334574 TTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGG 334633 Query 212374 TTAACCTCTATGGGTATCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAA 212433 || || || | ||||| |||| ||||| |||||||||||||| || || ||||||||| Sbjct 334634 TTTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTAAATTTCAACCAA 334693 Query 212434 TCAGTTGTTGATGCATCAGGTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCA 212493 ||||| |||||| ||| ||| || |||||||| |||| || ||||| | || Sbjct 334694 TCAGTAGTTGATAGTCAAGGGCGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCT 334753 Query 212494 AACCTTGGTATGGAAGTTATGCACGAAAGAAATGCACACAACTTCCCACTTGACTTAGC 212552 ||| ||||||| ||||||||||| ||| | ||||| ||||||||||| || ||| |||| Sbjct 334754 AACTTTGGTATAGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 334812 >seq1 Length=30427671 Score = 134 bits (148), Expect = 2e-26 Identities = 359/541 (66%), Gaps = 17/541 (3%) Strand=Plus/Minus Query 194557 GAGGTTGATGCATACTTTAAGCAATCGAAACCTGAGTATGTATTTCTTGCTGCTGCTAAG 194616 || ||||| | | |||| ||| ||| || | |||||| | || || || ||||| Sbjct 27546010 GATGTTGAATCCTTCTTTTCTCAAGAGAAGCCAGTTTATGTAATCCTAGCAGCAGCTAAA 27545951 Query 194617 GTAGGTGGTATAGGTGGTAACTCTACCTATCCTGCCGATTTCATCTATGACAATCTGATG 194676 || |||||||| | |||| ||||||||||| |||||||| || |||||| | Sbjct 27545950 GTTGGTGGTATTCACGCTAACAACACCTATCCTGCTGATTTCATTGGTGTCAATCTCCAG 27545891 Query 194677 ATTCAGACAAATGTTATTGATGCTGCATATCGTAATGGAGTTAAGAAACTATTGTTTCTA 194736 |||||||| ||||| || | |||||||| | || || ||||| || | || || Sbjct 27545890 ATTCAGACCAATGTGATCCACTCTGCATATGAGCACGGTGTGAAGAAGCTTCTCTTCCTT 27545831 Query 194737 GGTTCATCTTGCATCTATCCTAAGTT---TCCAAAGATACCTATTACAGAG---GATCAG 194790 || ||||| ||||| || ||||| || ||| || || ||| | ||| | | | Sbjct 27545830 GGATCATCCTGCATTTACCCTAAATTTGCTCCTCAG---CCAATTCCTGAGTCTGCTTTG 27545774 Query 194791 TTACTTGCTAGTCCTTTGGAAGAATCTAAT-AGTGCTTATGCAATTGCAAAGATAGCAGG 194849 ||| || | ||| ||| | ||||| |||| ||||| ||||| ||||| || || Sbjct 27545773 TTAACAGC-ATCGCTT--GAACCAACTAATGAGTG-GTATGCTATTGCTAAGATCGCTGG 27545718 Query 194850 TATGAGGATGTGTCAAGCATATCGTCAGCAGTATGGATTTAATGCAATATCATTAATGCC 194909 || | || ||||| || ||| | ||| | |||| ||||||| || ||||| Sbjct 27545717 GATTAAGACTTGTCAGGCTTATAGGATTCAGCACGGATGGGATGCAATCTCTGGCATGCC 27545658 Query 194910 TACTAATCTATACGGACCTAATGATAATTTTGATATTAATAATGGTCATGTATTACCATC 194969 ||||||||| || || |||||||| ||||| | | ||| |||||| | || | Sbjct 27545657 TACTAATCTCTATGGTCCTAATGACAATTTCCACCCGGAGAATTCTCATGTGCTTCCTGC 27545598 Query 194970 ACTCATCGCTAAGTTCCACGGATCACTTGAGAAGAGTGAGCACTGGGTTGTTAAGTTATG 195029 || || | |||||||| | | ||| | | | | || ||| | | || Sbjct 27545597 TCTTATGAGGAGGTTCCACGAGGCGAAAGTGAATGGAGCGGA---GGAAGTTGTGGTGTG 27545541 Query 195030 GGGTGATGGATCTCCGAAGAGAGAGTTCCTTCATGTTGATGATCTAGCAGAAGCTTGTGT 195089 |||| || |||| ||| |||||| | |||||||||||| | || || |||||||| Sbjct 27545540 GGGTACAGGTAGTCCGTTGAGGGAGTTCTTGCATGTTGATGATTTGGCTGATGCTTGTGT 27545481 Query 195090 T 195090 | Sbjct 27545480 T 27545480 Score = 102 bits (112), Expect = 1e-16 Identities = 242/364 (66%), Gaps = 14/364 (4%) Strand=Plus/Minus Query 194583 GAAACCTGAGTATGTATTTCTTGCTGCTGCTAAGGTAGGTGGTATAGGTGGTAACTCTAC 194642 |||||| | ||||| | || ||||||||||| || ||||| || || |||| || Sbjct 6155255 GAAACCAGTTTATGTCATCCTAGCTGCTGCTAAAGTCGGTGGGATTCATGCTAACAACAC 6155196 Query 194643 CTATCCTGCCGATTTCATCTATGACAATCTGATGATTCAGACAAATGTTATTGATGCTGC 194702 || || || |||||||| | |||||| || ||||| ||||| || | |||| Sbjct 6155195 ATACCCAGCTGATTTCATTGGGGTCAATCTCCAAATCCAGACCAATGTGATCCACTCTGC 6155136 Query 194703 ATATCGTAATGGAGTTAAGAAACTATTGTTTCTAGGTTCATCTTGCATCTATCCTAAGTT 194762 ||| | || || |||||||| | || || |||||||||||||| || || || || Sbjct 6155135 TTATACACACGGTGTGAAGAAACTCCTCTTCCTTGGTTCATCTTGCATTTACCCCAAATT 6155076 Query 194763 ---TCCAAAGATACCTATTACAGAGGATCAGTTACTTGCTAGTCCTTTGGA----AGAAT 194815 ||| || || ||| | || | | | ||| | |||| | || | || Sbjct 6155075 TGCTCCTCAG---CCGATTCCCGAATCTGCGCTTCTTACCGGTCCGCTCGAACCGACAAA 6155019 Query 194816 CTAATAGTGCTTATGCAATTGCAAAGATAGCAGGTATGAGGATGTGTCAAGCATATCGTC 194875 | ||| | ||||| || || ||||| || ||||| | |||||||||||| || || | Sbjct 6155018 CGAATGG----TATGCGATCGCCAAGATCGCGGGTATTAAGATGTGTCAAGCTTACCGGC 6154963 Query 194876 AGCAGTATGGATTTAATGCAATATCATTAATGCCTACTAATCTATACGGACCTAATGATA 194935 ||| || | |||| || || ||||| || ||||| || || | ||||||| Sbjct 6154962 TTCAGCATCAGTGGGATGCTATCTCCGGTATGCCCACGAATCTGTATGGTCAGAATGATA 6154903 Query 194936 ATTT 194939 |||| Sbjct 6154902 ATTT 6154899 >seq3 Length=23459830 Score = 91.5 bits (100), Expect = 2e-13 Identities = 220/333 (66%), Gaps = 0/333 (0%) Strand=Plus/Minus Query 193831 CTCCACTATCAGAAACCACACCATTTCATCCACGCTCTCCTTATGGTGTAGCAAAGTTGT 193890 |||||| ||| || || || || ||||| || | |||||||| | | | || | Sbjct 19007842 CTCCACAATCGGAGACGACGCCGTTTCACCCCAGATCTCCTTACGCAGCTTCCAAATGCG 19007783 Query 193891 ATGGTTATTGGATCATCAAGAATTATCGTGAGTCATATGGATTCCACGCTAGTTCTGGTA 193950 || | ||||| || |||||| | ||| | || || || |||| || || | Sbjct 19007782 CTGCTCATTGGTACACAGTGAATTACAGAGAGGCGTACGGTCTCTTCGCTTGTAACGGAA 19007723 Query 193951 TTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAACTCGTAAGATTACAC 194010 | | ||||||||||| || || | | ||||||| || || || | ||||| ||| Sbjct 19007722 TCTTGTTCAATCACGAGTCACCTCGCCGTGGTGAGAATTTCGTGACGAGGAAGATCACAA 19007663 Query 194011 AAGGTTTATCTAAGATCTCTGTTGGATTACAGAAGATTCTTTATCTTGGTAATCTTAATG 194070 || || | |||| ||||| || |||| || || | ||||| ||| | | | Sbjct 19007662 GAGCATTGGGAAGGATCAAGGTTGGTTTGCAGACGAAGCTATTCCTTGGGAATTTGCAAG 19007603 Query 194071 CTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGATGTGGTTAATGTTGCAAC 194130 | || ||||||||| ||| |||||||| ||||| |||||||| |||||||| | Sbjct 19007602 CGTCAAGAGATTGGGGATTTGCAGGAGATTATGTGGAAGCAATGTGGTTGATGTTGCAGC 19007543 Query 194131 AGGATGAACCCGATGATTATGTGATTGCTACAG 194163 | || | || |||||||| || | || |||| Sbjct 19007542 AAGAGAAGCCAGATGATTACGTTGTGGCAACAG 19007510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807555129338920