Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11]
7 sequences; 119,667,750 total letters
Query= NC_006883.2
Length=252401
Score E
Sequences producing significant alignments: (Bits) Value
seq7 482 4e-131
seq2 237 3e-57
seq6 228 1e-54
seq1 134 2e-26
seq3 91.5 2e-13
>seq7
Length=154478
Score = 482 bits (534), Expect = 4e-131
Identities = 677/945 (72%), Gaps = 4/945 (0%)
Strand=Plus/Minus
Query 211610 TTGGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATC 211668
|||| |||||||||||| | |||||||| | ||| | | | ||||| | |||||
Sbjct 1356 TTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACCGCAACTTCTGTTTTTATT 1298
Query 211669 GTAGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGT 211728
| |||||||| || || ||||| || ||||| || || || |||||||| || ||||
Sbjct 1297 ATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGA 1238
Query 211729 TCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATC 211788
|| | | || || ||||| || || || ||||| || |||| |||| || ||
Sbjct 1237 TCTCTTCTTTACGGAAACAATATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATT 1178
Query 211789 GGTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGT 211848
|| || || || || || ||||||||||| ||| | ||||||| ||||| ||||| ||
Sbjct 1177 GGATTGCATTTTTACCCAATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGC 1118
Query 211849 GGTCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGA 211908
|||||||| | | | | | ||||| | | || | | || ||||| |
Sbjct 1117 GGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGT 1058
Query 211909 CAGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCA 211968
||||||||||| | |||| | ||||||||||||||||| |||||| ||||||||
Sbjct 1057 GAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCT 998
Query 211969 CCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCA 212028
||||| |||| || ||||| ||| | | || ||| | |||||||| || ||
Sbjct 997 CCTGTTGCAGCTGCGACTGCTGTTTTCTTGATCTATCCAATTGGTCAGGGAAGTTTTTCT 938
Query 212029 GACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAA 212088
|| ||||||||| |||| || || || || |||||||| ||| | |||||||| || ||
Sbjct 937 GATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAG 878
Query 212089 CATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCA 212148
|| ||||| |||||||||||||| || ||| |||||| || ||| | ||||| || |
Sbjct 877 CACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCC 818
Query 212149 TTATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGT 212208
| || ||||||||| ||||| | || || ||| | ||| | |||||||| |
Sbjct 817 CTTTTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAA 758
Query 212209 TTAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTT 212268
|| || || | ||||||| ||||| ||||||||||| || || ||||| ||
Sbjct 757 AATGAATCTGCTAATGAAGGTTACAGATTCGGGCAAGAAGAAGAAACTTACAACATTGTA 698
Query 212269 GCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGA 212328
||||| || || || || || || | || ||||| ||||| |||||||| |
Sbjct 697 GCTGCTCACGGTTATTTTGGCCGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCGT 638
Query 212329 AGTTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGT 212388
|||||| |||||| | || | ||||| || | || | ||||| || || | |||
Sbjct 637 TCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGT 578
Query 212389 ATCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCA 212448
|| | || ||||| |||||||||||||| ||||| |||||||||||||| ||||||
Sbjct 577 ATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAG- 519
Query 212449 TCAGGTAAG-GTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGA 212507
||| | | | ||| || |||||||| |||| || ||||| | || ||||||||||||||
Sbjct 518 TCAAGGACGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGA 459
Query 212508 AGTTATGCACGAAAGAAATGCACACAACTTCCCACTTGACTTAGC 212552
||||||||| ||| | ||||| ||||||||||| || ||| ||||
Sbjct 458 AGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 414
>seq2
Length=19698289
Score = 237 bits (262), Expect = 3e-57
Identities = 341/479 (71%), Gaps = 10/479 (2%)
Strand=Plus/Minus
Query 212075 TATTCCAAGCAGAACATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTA 212134
||||||| || || || ||||| |||||||||||||| || ||| |||||| || |||
Sbjct 3332067 TATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTG 3332008
Query 212135 TGTTCGGTGGAGCATTATTCTCTGCTATGCACGGTTCTCTTGTTA-CATCTTCACTTATC 212193
| ||||| || | |||| |||||| || || | |||| || | ||| | |||
Sbjct 3332007 TATTCGGCGGCTCCCTATTTAGTGCTATACATGGGTTCCTTGGTAACTTCTAGTTTGATC 3331948
Query 212194 CGTGAAACCACTGGTTTAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAG 212253
| ||||||| | || || || | ||||||| ||||| ||||||||| |
Sbjct 3331947 AGGGAAACCATAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAATAA 3331888
Query 212254 ACATATAACATCGTTGCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCA 212313
|| || ||||| || ||||| ||||| || || || || | ||||||| ||
Sbjct 3331887 ACTTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCC-GT-------- 3331837
Query 212314 TTCAACAACAGCAGAAGTTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGG 212373
|||||||| | |||||| |||||| | || | ||||| || | || | |||
Sbjct 3331836 TTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGG 3331777
Query 212374 TTAACCTCTATGGGTATCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAA 212433
|| || || | ||||| |||| ||||| |||||||||||||| || || |||||||||
Sbjct 3331776 TTTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTAAATTTCAACCAA 3331717
Query 212434 TCAGTTGTTGATGCATCAGGTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCA 212493
||||| |||||| ||| ||| || |||||||| |||| || ||||| | ||
Sbjct 3331716 TCAGTAGTTGATAGTCAAGGGCGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCT 3331657
Query 212494 AACCTTGGTATGGAAGTTATGCACGAAAGAAATGCACACAACTTCCCACTTGACTTAGC 212552
||| ||||||| ||||||||||| ||| | ||||| ||||||||||| || ||| ||||
Sbjct 3331656 AACTTTGGTATAGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 3331598
>seq6
Length=366924
Score = 228 bits (252), Expect = 1e-54
Identities = 339/479 (71%), Gaps = 10/479 (2%)
Strand=Plus/Plus
Query 212075 TATTCCAAGCAGAACATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTA 212134
||||||| || || || ||| |||||||||||||| || ||| |||||| || |||
Sbjct 334343 TATTCCAGGCTGAGCACTTCATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTG 334402
Query 212135 TGTTCGGTGGAGCATTATTCTCTGCTATGCACGGTTCTCTTGTTA-CATCTTCACTTATC 212193
| ||||| || | |||| |||||| || || | |||| || | ||| | |||
Sbjct 334403 TATTCGGCGGCTCCCTATTTAGTGCTATACATGGGTTCCTTGGTAACTTCTAGTTTGATC 334462
Query 212194 CGTGAAACCACTGGTTTAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAG 212253
| ||||||| | || || || | ||||||| ||||| ||||||||| |
Sbjct 334463 AGGGAAACCATAGAAAATGAATCTGCTAATCAAGGTTACAGATTCGGTCAAGAAGAATAA 334522
Query 212254 ACATATAACATCGTTGCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCA 212313
|| || ||||| || ||||| ||||| || || || || | ||||||| ||
Sbjct 334523 ACTTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCC-GT-------- 334573
Query 212314 TTCAACAACAGCAGAAGTTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGG 212373
|||||||| | |||||| |||||| | || | ||||| || | || | |||
Sbjct 334574 TTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGG 334633
Query 212374 TTAACCTCTATGGGTATCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAA 212433
|| || || | ||||| |||| ||||| |||||||||||||| || || |||||||||
Sbjct 334634 TTTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTAAATTTCAACCAA 334693
Query 212434 TCAGTTGTTGATGCATCAGGTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCA 212493
||||| |||||| ||| ||| || |||||||| |||| || ||||| | ||
Sbjct 334694 TCAGTAGTTGATAGTCAAGGGCGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCT 334753
Query 212494 AACCTTGGTATGGAAGTTATGCACGAAAGAAATGCACACAACTTCCCACTTGACTTAGC 212552
||| ||||||| ||||||||||| ||| | ||||| ||||||||||| || ||| ||||
Sbjct 334754 AACTTTGGTATAGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 334812
>seq1
Length=30427671
Score = 134 bits (148), Expect = 2e-26
Identities = 359/541 (66%), Gaps = 17/541 (3%)
Strand=Plus/Minus
Query 194557 GAGGTTGATGCATACTTTAAGCAATCGAAACCTGAGTATGTATTTCTTGCTGCTGCTAAG 194616
|| ||||| | | |||| ||| ||| || | |||||| | || || || |||||
Sbjct 27546010 GATGTTGAATCCTTCTTTTCTCAAGAGAAGCCAGTTTATGTAATCCTAGCAGCAGCTAAA 27545951
Query 194617 GTAGGTGGTATAGGTGGTAACTCTACCTATCCTGCCGATTTCATCTATGACAATCTGATG 194676
|| |||||||| | |||| ||||||||||| |||||||| || |||||| |
Sbjct 27545950 GTTGGTGGTATTCACGCTAACAACACCTATCCTGCTGATTTCATTGGTGTCAATCTCCAG 27545891
Query 194677 ATTCAGACAAATGTTATTGATGCTGCATATCGTAATGGAGTTAAGAAACTATTGTTTCTA 194736
|||||||| ||||| || | |||||||| | || || ||||| || | || ||
Sbjct 27545890 ATTCAGACCAATGTGATCCACTCTGCATATGAGCACGGTGTGAAGAAGCTTCTCTTCCTT 27545831
Query 194737 GGTTCATCTTGCATCTATCCTAAGTT---TCCAAAGATACCTATTACAGAG---GATCAG 194790
|| ||||| ||||| || ||||| || ||| || || ||| | ||| | | |
Sbjct 27545830 GGATCATCCTGCATTTACCCTAAATTTGCTCCTCAG---CCAATTCCTGAGTCTGCTTTG 27545774
Query 194791 TTACTTGCTAGTCCTTTGGAAGAATCTAAT-AGTGCTTATGCAATTGCAAAGATAGCAGG 194849
||| || | ||| ||| | ||||| |||| ||||| ||||| ||||| || ||
Sbjct 27545773 TTAACAGC-ATCGCTT--GAACCAACTAATGAGTG-GTATGCTATTGCTAAGATCGCTGG 27545718
Query 194850 TATGAGGATGTGTCAAGCATATCGTCAGCAGTATGGATTTAATGCAATATCATTAATGCC 194909
|| | || ||||| || ||| | ||| | |||| ||||||| || |||||
Sbjct 27545717 GATTAAGACTTGTCAGGCTTATAGGATTCAGCACGGATGGGATGCAATCTCTGGCATGCC 27545658
Query 194910 TACTAATCTATACGGACCTAATGATAATTTTGATATTAATAATGGTCATGTATTACCATC 194969
||||||||| || || |||||||| ||||| | | ||| |||||| | || |
Sbjct 27545657 TACTAATCTCTATGGTCCTAATGACAATTTCCACCCGGAGAATTCTCATGTGCTTCCTGC 27545598
Query 194970 ACTCATCGCTAAGTTCCACGGATCACTTGAGAAGAGTGAGCACTGGGTTGTTAAGTTATG 195029
|| || | |||||||| | | ||| | | | | || ||| | | ||
Sbjct 27545597 TCTTATGAGGAGGTTCCACGAGGCGAAAGTGAATGGAGCGGA---GGAAGTTGTGGTGTG 27545541
Query 195030 GGGTGATGGATCTCCGAAGAGAGAGTTCCTTCATGTTGATGATCTAGCAGAAGCTTGTGT 195089
|||| || |||| ||| |||||| | |||||||||||| | || || ||||||||
Sbjct 27545540 GGGTACAGGTAGTCCGTTGAGGGAGTTCTTGCATGTTGATGATTTGGCTGATGCTTGTGT 27545481
Query 195090 T 195090
|
Sbjct 27545480 T 27545480
Score = 102 bits (112), Expect = 1e-16
Identities = 242/364 (66%), Gaps = 14/364 (4%)
Strand=Plus/Minus
Query 194583 GAAACCTGAGTATGTATTTCTTGCTGCTGCTAAGGTAGGTGGTATAGGTGGTAACTCTAC 194642
|||||| | ||||| | || ||||||||||| || ||||| || || |||| ||
Sbjct 6155255 GAAACCAGTTTATGTCATCCTAGCTGCTGCTAAAGTCGGTGGGATTCATGCTAACAACAC 6155196
Query 194643 CTATCCTGCCGATTTCATCTATGACAATCTGATGATTCAGACAAATGTTATTGATGCTGC 194702
|| || || |||||||| | |||||| || ||||| ||||| || | ||||
Sbjct 6155195 ATACCCAGCTGATTTCATTGGGGTCAATCTCCAAATCCAGACCAATGTGATCCACTCTGC 6155136
Query 194703 ATATCGTAATGGAGTTAAGAAACTATTGTTTCTAGGTTCATCTTGCATCTATCCTAAGTT 194762
||| | || || |||||||| | || || |||||||||||||| || || || ||
Sbjct 6155135 TTATACACACGGTGTGAAGAAACTCCTCTTCCTTGGTTCATCTTGCATTTACCCCAAATT 6155076
Query 194763 ---TCCAAAGATACCTATTACAGAGGATCAGTTACTTGCTAGTCCTTTGGA----AGAAT 194815
||| || || ||| | || | | | ||| | |||| | || | ||
Sbjct 6155075 TGCTCCTCAG---CCGATTCCCGAATCTGCGCTTCTTACCGGTCCGCTCGAACCGACAAA 6155019
Query 194816 CTAATAGTGCTTATGCAATTGCAAAGATAGCAGGTATGAGGATGTGTCAAGCATATCGTC 194875
| ||| | ||||| || || ||||| || ||||| | |||||||||||| || || |
Sbjct 6155018 CGAATGG----TATGCGATCGCCAAGATCGCGGGTATTAAGATGTGTCAAGCTTACCGGC 6154963
Query 194876 AGCAGTATGGATTTAATGCAATATCATTAATGCCTACTAATCTATACGGACCTAATGATA 194935
||| || | |||| || || ||||| || ||||| || || | |||||||
Sbjct 6154962 TTCAGCATCAGTGGGATGCTATCTCCGGTATGCCCACGAATCTGTATGGTCAGAATGATA 6154903
Query 194936 ATTT 194939
||||
Sbjct 6154902 ATTT 6154899
>seq3
Length=23459830
Score = 91.5 bits (100), Expect = 2e-13
Identities = 220/333 (66%), Gaps = 0/333 (0%)
Strand=Plus/Minus
Query 193831 CTCCACTATCAGAAACCACACCATTTCATCCACGCTCTCCTTATGGTGTAGCAAAGTTGT 193890
|||||| ||| || || || || ||||| || | |||||||| | | | || |
Sbjct 19007842 CTCCACAATCGGAGACGACGCCGTTTCACCCCAGATCTCCTTACGCAGCTTCCAAATGCG 19007783
Query 193891 ATGGTTATTGGATCATCAAGAATTATCGTGAGTCATATGGATTCCACGCTAGTTCTGGTA 193950
|| | ||||| || |||||| | ||| | || || || |||| || || |
Sbjct 19007782 CTGCTCATTGGTACACAGTGAATTACAGAGAGGCGTACGGTCTCTTCGCTTGTAACGGAA 19007723
Query 193951 TTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAACTCGTAAGATTACAC 194010
| | ||||||||||| || || | | ||||||| || || || | ||||| |||
Sbjct 19007722 TCTTGTTCAATCACGAGTCACCTCGCCGTGGTGAGAATTTCGTGACGAGGAAGATCACAA 19007663
Query 194011 AAGGTTTATCTAAGATCTCTGTTGGATTACAGAAGATTCTTTATCTTGGTAATCTTAATG 194070
|| || | |||| ||||| || |||| || || | ||||| ||| | | |
Sbjct 19007662 GAGCATTGGGAAGGATCAAGGTTGGTTTGCAGACGAAGCTATTCCTTGGGAATTTGCAAG 19007603
Query 194071 CTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGATGTGGTTAATGTTGCAAC 194130
| || ||||||||| ||| |||||||| ||||| |||||||| |||||||| |
Sbjct 19007602 CGTCAAGAGATTGGGGATTTGCAGGAGATTATGTGGAAGCAATGTGGTTGATGTTGCAGC 19007543
Query 194131 AGGATGAACCCGATGATTATGTGATTGCTACAG 194163
| || | || |||||||| || | || ||||
Sbjct 19007542 AAGAGAAGCCAGATGATTACGTTGTGGCAACAG 19007510
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 807555129338920
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