Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11]
7 sequences; 119,667,750 total letters
Query= NC_006884.2
Length=178249
Score E
Sequences producing significant alignments: (Bits) Value
seq7 547 8e-151
seq2 257 2e-63
seq6 248 1e-60
>seq7
Length=154478
Score = 547 bits (606), Expect = 8e-151
Identities = 725/1001 (72%), Gaps = 4/1001 (0%)
Strand=Plus/Minus
Query 170666 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 170725
|| ||| | ||| |||| |||||| || || | ||| |||| ||||||||||| ||
Sbjct 1396 TTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1337
Query 170726 ATGATCCCATGTCTTCTA-ACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCC 170784
|||||||| | ||| | || || || || ||| ||| | |||||||| ||||||||
Sbjct 1336 ATGATCCC-TACCTTATTGACCGCAACTTCTGTTTTTATTATCGCATTCATTGCTGCTCC 1278
Query 170785 TCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCT-TTCTTATATGGTAACA 170843
|||||| ||||| || || || | ||||| ||| | || ||| ||||| || || ||||
Sbjct 1277 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTT-TACGGAAACA 1219
Query 170844 ACATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCA 170903
| || || || ||||| | |||| |||| || || ||||| || || || || |
Sbjct 1218 ATATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATTGGATTGCATTTTTACCCAA 1159
Query 170904 TCTGGGAAGCAGCCACTATGGACGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTA 170963
|||||||||| || | | || || ||| | |||||||| |||||||| | || ||
Sbjct 1158 TCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTG 1099
Query 170964 TTTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACA 171023
|| | ||||| | |||| | || || |||||| | |||||||||| | |
Sbjct 1098 TTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCC 1039
Query 171024 GACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTG 171083
| || || ||| | |||||||| ||| ||||| ||||| ||||| | || || ||
Sbjct 1038 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTG 979
Query 171084 CAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTA 171143
| || ||| | | |||||| | |||||||| || |||||||||||||| ||||| |
Sbjct 978 CTGTTTTCTTGATCTATCCAATTGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 919
Query 171144 TCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACC 171203
|||| ||||| |||||||| ||| | || ||||| || || |||||||| || |||||||
Sbjct 918 TCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACC 859
Query 171204 CCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACG 171263
| || || ||| ||||||||| ||| | ||||| || || || ||||| ||||| |
Sbjct 858 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTTTTTAGTGCTATGCATG 799
Query 171264 GTTCTCTAGTGACATCTTCTCTAATCAGAGAGACAACTGAGAACGAGAGTCAAAACTACG 171323
|||| | || || ||| | | ||||| || || || || || || | || | |
Sbjct 798 GTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 739
Query 171324 GCTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCG 171383
| || | ||||| |||||||||||||| || |||||||| |||||||| || || || |
Sbjct 738 GTTACAGATTCGGGCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTG 679
Query 171384 GTAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCG 171443
| |||| || ||||| ||||| |||||||| |||||||| ||||| |||||| | |
Sbjct 678 GCCGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAG 619
Query 171444 CTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCA 171503
| | | || ||||| || | ||||| || || | ||||| |||| ||||| ||||
Sbjct 618 CGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCA 559
Query 171504 ACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGATTGTACCAA 171563
|||| || || ||||| |||||||||||||| || ||| | ||| || | |
Sbjct 558 ACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATA 499
Query 171564 CATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATG 171623
| |||| ||| || ||||| | || |||||||| |||||||||||||||||| | ||||
Sbjct 498 CTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 439
Query 171624 CACACAACTTCCCACTAGACCTAGCATCTGCTGAGTCTACA 171664
| ||||||||||| ||||||||||| ||| |||| || ||
Sbjct 438 CTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAGGCTCCA 398
Score = 396 bits (438), Expect = 3e-105
Identities = 717/1049 (68%), Gaps = 21/1049 (2%)
Strand=Plus/Plus
Query 171784 AAAGAGAATGGTTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCG 171843
||| ||| | ||||| || | ||||| |||||| ||| || || ||||| || | |
Sbjct 32745 AAAAAGATTTATTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAG 32804
Query 171844 GATGGTCTGGTCTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAG 171903
| ||||||||||| || || || |||||||| || | || | || ||||||||| ||
Sbjct 32805 GTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAG 32864
Query 171904 GAACTACTTTCGTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAG 171963
| || || || || || |||||||| || ||||| | || || ||| | || ||
Sbjct 32865 GTACAACCTTTGTAACTTCATGGTATACTCATGGATTGGCCAGTTCCTATTTAGAAGGTT 32924
Query 171964 CAAACTTTTTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGT 172023
|| |||||||| || ||||| || || |||| | || | | | ||| | | ||||
Sbjct 32925 GCAATTTTTTAACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGT 32984
Query 172024 TCCTATGGGGACCTGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTAT 172083
| || ||||| ||||| |||||||||||| || || |||| |||||||||||| ||||
Sbjct 32985 TACTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTAT 33044
Query 172084 GGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTG 172143
|| ||||| || | || || | || | | | |||||||| ||| | | || ||||
Sbjct 33045 GGGCTTTTGTTGCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTG 33104
Query 172144 AGATTGCAGGACTTGTTGGGATACGTCCTTACAACGCACTAGCATTCTCAGCAGTTATTG 172203
| |||| || |||| | || ||||| || ||| | |||||||| | ||||
Sbjct 33105 AACTTGCTCGATCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCCATTG 33164
Query 172204 CAGTATTCACGAGCATCTTTCTAATATATCCATTAGGTCAGCATAGTTGGTTCTTCGCAC 172263
| || || |||| ||||| |||||| ||||||| | |||||||||| || |
Sbjct 33165 CTGTTTTTGTTTCTGTCTTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGC 33224
Query 172264 CTTCATTTGGTGTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATA 172323
|| |||||||| || || || ||||| | || | || | || || || || |||
Sbjct 33225 CTAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATT 33284
Query 172324 TAACTCTTAATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTAT 172383
|| | || ||||||||||||||||| || || ||| |||| || | || | ||||
Sbjct 33285 GGACATTGAACCCATTTCATATGATGGGAGTCGCCGGTGTACTGGGCGCGGCTCTGCTAT 33344
Query 172384 GTGCCATACATGGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTG 172443
| || || |||||||| || ||| | || || || | |||||| ||
Sbjct 33345 GCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGA---------------TG 33389
Query 172444 AAGGTAAGATTCAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAAACTT 172503
| | | | ||| |||| ||| | || || | || || || | ||||||||||
Sbjct 33390 --GTGATGGTGCAA-ATACA---TTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTT 33443
Query 172504 ATAGTATGATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACA 172563
|| ||| | || |||||| | || |||||||| || ||||| | || ||||| || |
Sbjct 33444 ATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATA 33503
Query 172564 AAAGATTCTTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTA 172623
|| | | ||||| ||| ||||||| || ||||| || | ||| | |||| ||
Sbjct 33504 AACGTTGGTTACATTTCTTTATGTTATTTGTACCGGTAACTGGTTTATGGATGAGTGCTC 33563
Query 172624 TAGGTATCGTAGGTCTTGCACTTAACCTCAGAGCATACGACTTTGTATCTCAAGAGATAA 172683
| || | || ||| | || | ||||| | || || ||||| || || || || ||
Sbjct 33564 TTGGAGTAGTCGGTTTAGCTTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCC 33623
Query 172684 GAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAG 172743
| ||||| ||||| ||||| ||||| || ||||| ||||| || |||||| | || ||||
Sbjct 33624 GTGCAGCGGAAGATCCAGAATTTGAGACTTTCTATACTAAAAATATTCTTTTAAACGAAG 33683
Query 172744 GTATGAGAGCATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAG 172803
|||| | || |||||| | || ||||| || ||||| ||| || | ||||| || |
Sbjct 33684 GTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGG 33743
Query 172804 AAGTCTTGCCACGAGGCAACGCACTATAA 172832
| || | ||||| || ||||| || |||
Sbjct 33744 AGGTTCTACCACGTGGAAACGCTCTTTAA 33772
>seq2
Length=19698289
Score = 257 bits (284), Expect = 2e-63
Identities = 356/494 (72%), Gaps = 12/494 (2%)
Strand=Plus/Minus
Query 171173 TTCCAAGCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGTATG 171232
||||| || || |||||||| || |||||||| || || ||| ||||||||| ||| |
Sbjct 3332065 TTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 3332006
Query 171233 TTCGGTGGTAGTCTCTTCAGTGCAATGCACGG-TTCTCTAGTGACATCTTCTCTAATCAG 171291
||||| || || || ||||| || || || ||| | || || ||| | | |||||
Sbjct 3332005 TTCGGCGGCTCCCTATTTAGTGCTATACATGGGTTCCTTGGTAACTTCTAGTTTGATCAG 3331946
Query 171292 AGAGACAACTGAGAACGAGAGTCAAAACTACGGCTATAAGTTCGGACAAGAAGAAGAAAC 171351
|| || | || || || | || | || || | ||||| ||||||||| ||||
Sbjct 3331945 GGAAACCATAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAATAAAC 3331886
Query 171352 ATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTATGCATCATT 171411
|| |||||||| ||||||||||| || || || |||| ||||||| || ||
Sbjct 3331885 TTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCC-GT--------TT 3331835
Query 171412 CAACAACTCTCGTTCATTACACTTCTTCCTCGCTGTATTCCCTGTAGTCTGTGTATGGTT 171471
|||||| |||||||| ||||| |||||| | || | | || ||||| || | |||||
Sbjct 3331834 CAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTT 3331775
Query 171472 AACCTCTATGGGTATCTGTACAATGGCATTCAACCTTAACGGATTCAACTTCAACCAATC 171531
|| || | ||||| | || ||||| |||||||| || || || || |||||||||||
Sbjct 3331774 TACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTAAATTTCAACCAATC 3331715
Query 171532 AGTTGTAGAT-GCAAACGGAAAGATTGTACCAACATGGGGAGATGTTCTTAACAGAGCAA 171590
||| || ||| | || || | | || | | |||| ||| || ||||| | || |
Sbjct 3331714 AGTAGTTGATAGTCAAGGGCGTGTTATTAATA-CTTGGGCTGATATTATTAACCGTGCTA 3331656
Query 171591 ACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGCAT 171650
|| |||| || ||||||||||||||| | ||||| ||||||||||| |||||||||||
Sbjct 3331655 ACTTTGGTATAGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTG 3331596
Query 171651 CTGCTGAGTCTACA 171664
||| |||| || ||
Sbjct 3331595 CTGTTGAGGCTCCA 3331582
>seq6
Length=366924
Score = 248 bits (274), Expect = 1e-60
Identities = 354/494 (72%), Gaps = 12/494 (2%)
Strand=Plus/Plus
Query 171173 TTCCAAGCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGTATG 171232
||||| || || ||| ||| || |||||||| || || ||| ||||||||| ||| |
Sbjct 334345 TTCCAGGCTGAGCACTTCATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 334404
Query 171233 TTCGGTGGTAGTCTCTTCAGTGCAATGCACGG-TTCTCTAGTGACATCTTCTCTAATCAG 171291
||||| || || || ||||| || || || ||| | || || ||| | | |||||
Sbjct 334405 TTCGGCGGCTCCCTATTTAGTGCTATACATGGGTTCCTTGGTAACTTCTAGTTTGATCAG 334464
Query 171292 AGAGACAACTGAGAACGAGAGTCAAAACTACGGCTATAAGTTCGGACAAGAAGAAGAAAC 171351
|| || | || || || | || | || || | ||||| ||||||||| ||||
Sbjct 334465 GGAAACCATAGAAAATGAATCTGCTAATCAAGGTTACAGATTCGGTCAAGAAGAATAAAC 334524
Query 171352 ATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTATGCATCATT 171411
|| |||||||| ||||||||||| || || || |||| ||||||| || ||
Sbjct 334525 TTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCC-GT--------TT 334575
Query 171412 CAACAACTCTCGTTCATTACACTTCTTCCTCGCTGTATTCCCTGTAGTCTGTGTATGGTT 171471
|||||| |||||||| ||||| |||||| | || | | || ||||| || | |||||
Sbjct 334576 CAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTT 334635
Query 171472 AACCTCTATGGGTATCTGTACAATGGCATTCAACCTTAACGGATTCAACTTCAACCAATC 171531
|| || | ||||| | || ||||| |||||||| || || || || |||||||||||
Sbjct 334636 TACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTAAATTTCAACCAATC 334695
Query 171532 AGTTGTAGAT-GCAAACGGAAAGATTGTACCAACATGGGGAGATGTTCTTAACAGAGCAA 171590
||| || ||| | || || | || | || |||| ||| || ||||| | || |
Sbjct 334696 AGTAGTTGATAGTCAAGGGCGTG-TTATTAATACTTGGGCTGATATTATTAACCGTGCTA 334754
Query 171591 ACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGCAT 171650
|| |||| || ||||||||||||||| | ||||| ||||||||||| |||||||||||
Sbjct 334755 ACTTTGGTATAGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTG 334814
Query 171651 CTGCTGAGTCTACA 171664
||| |||| || ||
Sbjct 334815 CTGTTGAGGCTCCA 334828
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570268750101480
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