Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11]
7 sequences; 119,667,750 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq5 226 4e-54
seq3 159 4e-34
seq2 87.8 2e-12
>seq5
Length=26975502
Score = 226 bits (250), Expect = 4e-54
Identities = 439/633 (69%), Gaps = 29/633 (5%)
Strand=Plus/Minus
Query 33298 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAAC 33357
|||||||| |||||||| ||||| ||||| |||||||| ||| | |||||| |||||
Sbjct 16408801 ATCAAACAAGCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTTGAAAAA 16408742
Query 33358 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT-CCAGA 33416
|||||||| ||||||| || || || || | ||| ||||| ||| | || | | || ||
Sbjct 16408741 GTGAGTCCAGGCATTAAACCTCGTTTCTTCAACCAGAATATCGAA-CAAAAGCTACCGGA 16408683
Query 33417 AAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTC 33476
||||| || ||||| || |||||| || | | |||||| | | || ||
Sbjct 16408682 GAAGAATATACCTTCAACGCAAGCAAACGCTACGATTCTCTCAGCGAA----GCTTTGAG 16408627
Query 33477 AT--GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 33532
|| || ||||| || |||||| || || || || | ||||||| || ||||| |
Sbjct 16408626 ATCCGTTGATCCATTTCATAGCCCATTCTGCTTTTTTCGT--CACAAGGAATGGTTTCGA 16408569
Query 33533 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 33592
| ||| ||| |||| | | | || || | ||||| | ||| || |||| | ||||
Sbjct 16408568 TTGCACGAAAAAGATGATCTCTCTCTTTGTTGTCTTTGATATACGTGTCGAGAAGGAGAC 16408509
Query 33593 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 33652
||||||| || || ||||| || ||||| || || || ||||||||||| | ||| |
Sbjct 16408508 TATACATCTCGGAGTGAATATTCTCAATCGCGATTTGGAATCCGTAGAAGGCACGAGCTT 16408449
Query 33653 CGGTAATCTGTACTTCTGTACAA-AATC--GTTCCGCCAAATTTTCATTCACTATTCCGT 33709
| | ||||| || || | ||| |||| ||| | | ||| || || |||||||
Sbjct 16408448 CTGAGATCTGAACATCGG-ACATGAATCTAGTTGAG--AGATTCTCGAGAACGATTCCGT 16408392
Query 33710 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC--TGGT--GTT 33765
| || || || || || | || ||||| || || | |||||| |||| ||
Sbjct 16408391 CTGATGCGGCGAAGAAGGCGAGGACGTGTTTAATGAAGTGACGTTCGTCGTTGGTTAGTG 16408332
Query 33766 AGTTTATTCCAATC---ATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAAT 33822
||||| | ||| || |||| |||| ||| | ||| |||||||| ||||||| ||
Sbjct 16408331 AGTTT-TCCCAGTCGCGATTG---TCTTGAGAGAGATCGACTTCTTCGGCTGTCCAGAAG 16408276
Query 33823 GATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACA 33882
||||| || || || || ||||| | ||| || | |||||||||||||| |||
Sbjct 16408275 GATGCTTCGGCTTTCTTGTACATCTCCCAAATCTGTGGGTATTGGATTGGGAACATACAG 16408216
Query 33883 AATCTATTTGGATTTGGTGCAAGGATGGGTTCC 33915
|||| || ||| |||||| ||||| ||||||
Sbjct 16408215 AATCGATCTGGTGTTGGTGTTAGGATTGGTTCC 16408183
>seq3
Length=23459830
Score = 159 bits (176), Expect = 4e-34
Identities = 298/432 (69%), Gaps = 7/432 (2%)
Strand=Plus/Plus
Query 33481 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33540
||||| || |||||| | || ||||| || ||||| || ||||| |||||| |
Sbjct 9980603 ATCCATTTCATAGCCCATTGAGCTTTCTTGGCGACGCAAGGGATTGTTTCAATGGCACGA 9980662
Query 33541 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33600
||||||| | | | || || ||||||| | ||||||||||| | |||||||||||
Sbjct 9980663 AAGAGATGATCTCTCTCTTTGTTATCTTTGATATAAGTATCGAGAAGGAGACTATACATC 9980722
Query 33601 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33660
||||| || ||||||||||| || ||||| || ||||||||| | ||||| | |
Sbjct 9980723 TCCGAGTGGATGTTTTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCAGAGACT 9980782
Query 33661 TGTACTTCTGTACA-AAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGC 33719
|| || || | ||| || || || | ||| || || ||||||||| || ||
Sbjct 9980783 TGAACATC-GGACATGAAGCGAGAAGCGAGATTCTCTAGTACGATTCCGTCAGATGCAGC 9980841
Query 33720 AAAAAACGCCAATACATGTTTTATAAA---ATATTTTTCGTCTGGTGTTAGT-TTATTCC 33775
|| || || | || ||||| || || | || |||| | || | | || | ||
Sbjct 9980842 GAAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTCACCGTC-GTTGAGACTGTTTTCCC 9980900
Query 33776 AATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33835
| || | | |||| |||| |||||||||||| | ||||| |||||||| || || |
Sbjct 9980901 AGTCGCGGTTGTCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAATGATGCTTCGGCTT 9980960
Query 33836 TTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGAT 33895
|||| ||||| | |||||| | || || |||||||| ||| ||||| | |||
Sbjct 9980961 TTTTGTACATTTCCCAGATCTGTGGGTAGTGAATTGGGAACATACAGAATCTGTCTGGGG 9981020
Query 33896 TTGGTGCAAGGA 33907
|||||| ||||
Sbjct 9981021 TTGGTGTTAGGA 9981032
>seq2
Length=19698289
Score = 87.8 bits (96), Expect = 2e-12
Identities = 153/223 (69%), Gaps = 0/223 (0%)
Strand=Plus/Minus
Query 63371 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430
|||||| || || | || | ||| || | || | || | || ||| |||| ||||||
Sbjct 9294859 TCCTCCTTGGTCAACATAACGAGCTGTATCGTTGAATACACGCAGCATAGGAACAATACC 9294800
Query 63431 GTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63490
|| ||| | ||||| || || || || ||||| | |||||||||||| || |||
Sbjct 9294799 ATTAGATGTTCCATTTGTGCCACGAATGTAACTTCCGGTAGCACGAATATTATGAACTGA 9294740
Query 63491 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63550
| ||| || ||||| || ||| || | || || ||| | || ||||| ||
Sbjct 9294739 AACACCAATACCCCCAGCAGATTTGCTTATAACAGCACACTCTTTGAGTGTTTCATATAT 9294680
Query 63551 ACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63593
||||| ||||||||||| ||||| | |||||| ||||||
Sbjct 9294679 GCCCTCAATGCTATCATCTTTCATGCAGACTAGAAAGCAGCTA 9294637
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622947145492120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |