Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq2 111 4e-19 seq5 109 1e-18 seq3 100 7e-16 seq4 93.3 1e-13 >seq2 Length=19698289 Score = 111 bits (122), Expect = 4e-19 Identities = 133/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 111702 CAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATT 111761 ||||||||||| || ||| || ||||| |||||||||||||| || || ||||| Sbjct 7082473 CAGTTTTATGTGGCAGAAGGGGAACTCTCATGTCAAATGTATCAGCGTTCAGCAGATATG 7082414 Query 111762 GGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCAT 111821 || |||||||| |||||||| ||||| |||| | || ||||||||| | | |||||| Sbjct 7082413 GGCCTTGGTGTGCCGTTTAACATTGCTTCTTACTCTCTTCTTACTTGCATGCTGGCTCAT 7082354 Query 111822 TTTACAAATCTCAAACCGGGTGAATTCATTCACGTTATCGGAGATGCGCATGTTTACACA 111881 | |||| || ||||| || || || ||| | || ||||| ||||| |||| | Sbjct 7082353 GTGTGTGATCTTGTTCCTGGTGATTTTATCCATGTTCTTGGGGATGCTCATGTATACAAA 7082294 Query 111882 A 111882 | Sbjct 7082293 A 7082293 Score = 111 bits (122), Expect = 4e-19 Identities = 159/220 (72%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 ||||| || ||| ||| ||||| || | ||| ||||| || | |||||| |||| | Sbjct 9294656 ATGAAAGATGATAGCATTGAGGGCATATATGAAACACTCAAAGAGTGTGCTGTTATAAGC 9294715 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACAT 363740 || ||| || || |||||||| || | || ||| ||||||| || | | |||||||| Sbjct 9294716 AAATCTGCTGGGGGTATTGGTGTTTCAGTTCATAATATTCGTGCTACCGGA-AGTTACAT 9294774 Query 363741 TCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATAC 363800 ||| |||||| ||| || ||||| | ||||| ||||| ||||| || || |||| Sbjct 9294775 TCGTGGCACAAATGGAACATCTAATGGTATTGTTCCTATGCTGCGTGTATTCAACGATAC 9294834 Query 363801 TGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGG 363840 || | || || ||||| || ||||| ||| | |||||| Sbjct 9294835 AGCTCGTTATGTTGACCAAGGAGGAGGCAAGAG-AAAGGG 9294873 >seq5 Length=26975502 Score = 109 bits (120), Expect = 1e-18 Identities = 346/525 (66%), Gaps = 25/525 (5%) Strand=Plus/Plus Query 22437 GAATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGTTCA----TTCGCGGAAC 22492 ||| || ||||| ||||| |||||||||| ||| || | ||| ||||| || Sbjct 16408589 GAAAAAAGCAGAATGGGCTATGAAATGGATCAACG--GATC--TCAAAGCTTCGCTGAGA 16408644 Query 22493 GTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGG-AGCATTTTGTGCAATC 22551 | | | || |||||| |||||||| || ||||| || || ||| |||||| | || Sbjct 16408645 GAATCGTAGCGTTTGCTTGCGTTGAAGGTATATTCTTCTCCGGTAGC-TTTTGTTCGATA 16408703 Query 22552 TTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGC 22611 || ||| | || ||||| | | ||||| || || || |||||||| || || ||| Sbjct 16408704 TTCTGGTTGAAGAAACGAGGTTTAATGCCTGGACTCACTTTTTCAAACGAATTGATTTCG 16408763 Query 22612 CGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATATCATTCAT 22671 |||| || |||||||| ||||| || ||| || ||||| | || || | | Sbjct 16408764 AGAGACGAAGGTCTTCACTGTGATTTCGCTTGTTTGATATATAGTCTTCTTAGAACT--- 16408820 Query 22672 AAACTTCCATATGAAACT-GTACTTGATA----TTATTACAAATGCAGTTGAACTTGAAC 22726 || || || ||| | || |||| | || || |||| ||||| |||| Sbjct 16408821 -AAGTTTGAT--GAAGATCGT--TTGAAAGCGATTGTTTGTGATGCTGTTGAGATTGAGA 16408875 Query 22727 GTCTATTTATTTGCGAGGCG-TTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAATG 22785 | ||| |||| || ||| || | || | | |||| || ||| || | ||| Sbjct 16408876 GAGAGTTTGTTTGTGACGCGCTTTCTTGTGCCT-TGGTTGGGATGAATCGTGAGTTGATG 16408934 Query 22786 AGTACATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCAT 22845 ||| || ||| | || ||||| ||| | | || | | || || | || ||| Sbjct 16408935 AGTCAGTACATTGAGTTCGTTGCTGATAGGTTGTTGGCTGCGCTTGGGTGTGGTAAGGTG 16408994 Query 22846 TATAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAAT 22905 ||| || |||||| ||||| ||||||||| | ||||| ||| | || |||||||| Sbjct 16408995 TATGGTGTGACTAATCCTTTTGATTGGATGGAATTGATTTCGCTTCAGGGTAAGACCAAC 16409054 Query 22906 TTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATG 22950 || || || || ||||||||||| || || ||||| ||||||| Sbjct 16409055 TTTTTTGAGAAGAGAGTTGGTGAGTATCAGAAAGCTTCTGTTATG 16409099 >seq3 Length=23459830 Score = 100 bits (110), Expect = 7e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 22783 ATGAGTACATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAG 22842 |||||| |||||| | |||||||| ||| | || || | | || || || | ||| Sbjct 9980201 ATGAGTCAGTATATTGAGTTTGTTGCGGATAGGCTTTTGGGTGCGCTTGGGTACGGGAAG 9980142 Query 22843 CATTATAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACC 22902 || || |||||| || || ||||||||||||||||||||| |||| || || Sbjct 9980141 GTGTACGGTGTTACTAATCCGTTCGATTGGATGGAACTTATTTCACTTCAAGGGAAAACG 9980082 Query 22903 AATTTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGC 22940 ||||||||||| ||| | |||||||| |||||||| || Sbjct 9980081 AATTTCTTCGAGAAACGTGTTGGTGATTACCAAAAGGC 9980044 >seq4 Length=18585056 Score = 93.3 bits (102), Expect = 1e-13 Identities = 112/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 111672 ATGGCACTTCCACCATGTCATCTTATGTGC-CAGTTTTATGTACACGACGGGATGCTTTC 111730 ||||||||||| ||||| || | | | ||| ||||||||||| | || ||||| Sbjct 16511708 ATGGCACTTCCTCCATGCCA-CATGTTTGCACAGTTTTATGTTGCAAATGGAGAACTTTC 16511650 Query 111731 ATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAG 111790 ||| |||||||||||||| || || ||||| ||||| || || |||||||| ||||| Sbjct 16511649 ATGTCAAATGTATCAGCGTTCAGCCGATATGGGTCTCGGCGTACCGTTTAACATTGCCTC 16511590 Query 111791 TTACGCACTACTTACTTGCTTAATCGCTCA 111820 ||| | || ||||| ||| | | ||||| Sbjct 16511589 ATACTCCCTTCTTACATGCATTCTTGCTCA 16511560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303353483105474