Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq5 116 3e-21 seq2 102 7e-17 seq1 87.8 2e-12 seq4 84.2 2e-11 >seq5 Length=26975502 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || |||||| | ||||| || | || || |||| || ||| | Sbjct 772896 ATGCAAATCTTCGTGAAAACACTCACTGGCAAGACTATCACTCTCGAGGTTGAGAGCTCT 772837 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || || ||||||| ||||| |||||||| ||||| ||||| Sbjct 772836 GACACCATCGACAATGTTAAGGCAAAGATTCAGGACAAGGAAGGCATTCCTCCGGATCAG 772777 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || ||| | || | || ||| || || || ||||||| | | | | | |||||| ||| Sbjct 772776 CAAAGATTAATATTCGCCGGTAAACAGCTAGAAGATGGCCGTACCTTGGCCGATTACAAC 772717 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||| |||||||| || ||||||| || | | || ||||| || Sbjct 772716 ATTCAGAAAGAATCAACCCTTCATTTGGTTCTCCGTTTAAGAGGTGG 772670 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || |||||| | ||||| || | || || |||| || ||| | Sbjct 6974463 ATGCAAATTTTCGTGAAAACACTCACTGGTAAGACCATCACTCTCGAGGTTGAGAGCTCT 6974404 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || || |||||| ||||| |||||||| ||||| || || Sbjct 6974403 GACACCATCGACAATGTTAAGGCAAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 6974344 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || ||| |||| | || || ||||| || ||||||| | | | | | ||||| ||| Sbjct 6974343 CAAAGATTGATCTTCGCTGGTAAGCAGCTAGAAGATGGCCGCACCTTGGCTGATTACAAC 6974284 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || |||||||| ||| | || || || | || || ||||| || Sbjct 6974283 ATCCAGAAAGAATCAACACTCCACTTGGTTCTCAGGTTAAGAGGTGG 6974237 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || | ||||| || | ||||| | || || ||| | Sbjct 772668 ATGCAAATCTTTGTCAAGACTCTGACTGGCAAGACCATTACTTTGGAGGTTGAGAGCTCT 772609 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | |||||| |||||| ||||| ||||| || ||||| ||||| Sbjct 772608 GACACTATTGACAACGTCAAAGCAAAGATCCAGGACAAGGAAGGAATCCCTCCGGATCAG 772549 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||||| || | | ||| ||||| || ||||| | |||| | || || ||| Sbjct 772548 CAGAGACTTATCTTTGCCGGTAAGCAGCTTGAAGACGGAAGAACTCTTGCTGACTACAAC 772489 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 |||||||| || || || ||||||| ||| Sbjct 772488 ATTCAAAAGGAGTCGACCCTTCATTTGGTG 772459 >seq2 Length=19698289 Score = 102 bits (112), Expect = 7e-17 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 23980 AGCCAAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAG 24039 ||| ||| || ||||| | || || ||||| |||| || || |||| || |||| | Sbjct 19344690 AGCAAAAAAAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACTCTCGAGG 19344749 Query 24040 TCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATAC 24099 ||||| || ||||||||||| | ||||| ||||| ||||| ||||| || | Sbjct 19344750 TCGAGTCCTCTGACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCC 19344809 Query 24100 CTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCA 24159 | || || || ||| || |||||| || ||| ||||| |||||||| | | | | | Sbjct 19344810 CACCGGACCAGCAGCGATTGATTTTCGCCGGAAAGCAGCTCGAAGACGGACGTACCTTAG 19344869 Query 24160 GCGATTATAACATTCAAAAAGAATCTACAATTCA 24193 |||||| ||||| || || ||||| || |||| Sbjct 19344870 CCGATTACAACATCCAGAAGGAATCAACGCTTCA 19344903 Score = 89.7 bits (98), Expect = 4e-13 Identities = 103/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 |||||||| |||||||| || ||||||||||| ||||||| | || |||||| | ||| Sbjct 14981392 GACAAAGAGGGCATACCACCTGATCAACAGAGGCTGATTTTTGCTGGTAAGCAATTGGAA 14981451 Query 24144 GATGACAGAAACGTCAGC-GATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 |||| | | || | ||| ||||| ||||| || ||||| ||||| ||||| | || | Sbjct 14981452 GATGGCCG-GACCTTAGCTGATTACAACATCCAGAAAGAGTCTACTCTTCATCTTGTCCT 14981510 Query 24203 AAGATTGAGAGGAGGA 24218 || | ||||| ||| Sbjct 14981511 CAGGCTCAGAGGTGGA 14981526 >seq1 Length=30427671 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/144 (75%), Gaps = 3/144 (2%) Strand=Plus/Minus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 |||||||| || ||||| || ||||||||||| |||| | | || ||||| || ||| Sbjct 11218920 GACAAAGAGGGAATACCACCTGATCAACAGAGGTTGATATTTGCTGGTAAGCAGCTTGAA 11218861 Query 24144 GATGACAGAAACGTCAGC-GATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 |||| || ||| | ||| ||||| |||||||| |||||||| || |||| || || || Sbjct 11218860 GATGGTAG-AACATTAGCGGATTACAACATTCAGAAAGAATCGACTCTTCACTTGGTATT 11218802 Query 24203 AAGATTGAGAGG-AGGACTATAAT 24225 || | || || ||||||| || Sbjct 11218801 GAGGCTTAGGGGTGGGACTATGAT 11218778 Score = 82.4 bits (90), Expect = 7e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| || || || || | |||||| | || || ||| | Sbjct 24276822 ATGCAAATCTTTGTGAAAACTTTGACAGGCAAGACCATTACCTTGGAGGTTGAGAGCTCA 24276763 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | |||||| |||||| || || ||| | || || || || ||| Sbjct 24276762 GACACAATTGATAATGTCAAAGCTAAGATTCAGGATAAGGAATGGATCCCACCAGACCAA 24276703 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 |||||||| || | | || || || ||||| |||| || || | || ||||| || Sbjct 24276702 CAGAGACTCATCTTTGCTGGTAAACAGCTCGAGGATGGAAG-GACTTTGGCTGATTACAA 24276644 Query 24170 CATTCAAAAAGAATCTACAATTCA 24193 ||| || ||||| ||||| |||| Sbjct 24276643 CATCCAGAAAGAGTCTACTCTTCA 24276620 >seq4 Length=18585056 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | || ||||| | || ||| |||| || || | | Sbjct 2718559 ATGCAGATCTTTGTTAAGACTCTCACCGGAAAGACAATCACCCTCGAGGTGGAAAGCTCC 2718618 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || || ||||| || || || ||||| ||||| ||||| Sbjct 2718619 GACACCATCGACAACGTTAAGGCCAAGATCCAGGATAAGGAGGGCATTCCTCCGGATCAG 2718678 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 ||||| || |||| || ||||||||| || || |||| | | |||| || ||||| || Sbjct 2718679 CAGAGGCTTATTTTCGCCGGCAAGCAGCTAGAGGATGGCCG-TACGTTGGCTGATTACAA 2718737 Query 24170 CATTCAAAAAGAATCTAC 24187 || || || ||||| || Sbjct 2718738 TATCCAGAAGGAATCCAC 2718755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429935963321085