Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11]
7 sequences; 119,667,750 total letters
Query= NC_007767.1
Length=132959
Score E
Sequences producing significant alignments: (Bits) Value
seq5 89.7 4e-13
>seq5
Length=26975502
Score = 89.7 bits (98), Expect = 4e-13
Identities = 148/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345
|||||||| |||||||| || || || || || |||||||| | || ||| |
Sbjct 772668 ATGCAAATCTTTGTCAAGACTCTGACTGGCAAGACCATTACTTTGGAGGTTGAGAGCTCT 772609
Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404
|||||| ||| |||| || ||| ||| || || || ||||| |||| |||||
Sbjct 772608 GACACTATTG-ACAACGTCAAAGCAAAGATCCAGGACAAGGAAGGAATCCCTCCGGATCA 772550
Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464
||| |||||||| | ||| || || || | ||||| | | ||| | || || || ||
Sbjct 772549 GCAGAGACTTATCTTTGCCGGTAAGCAGCTTGAAGACGGAAGAACTCTTGCTGACTACAA 772490
Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTG 115495
||||||||| ||||| || | ||| |||||
Sbjct 772489 CATTCAAAAGGAGTCGACCCTTCATTTGGTG 772459
Score = 87.8 bits (96), Expect = 2e-12
Identities = 147/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345
|||||||| || || ||||| ||||| || || || || || |||| ||| |
Sbjct 772896 ATGCAAATCTTCGTGAAAACACTCACTGGCAAGACTATCACTCTCGAGGTTGAGAGCTCT 772837
Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404
||||| | | |||| || || ||| ||| || || |||||| | || |||||
Sbjct 772836 GACACCATCG-ACAATGTTAAGGCAAAGATTCAGGACAAGGAAGGCATTCCTCCGGATCA 772778
Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464
||||||| | || | || || ||||| ||||||||| | ||| |||||||||| ||
Sbjct 772777 GCAAAGATTAATATTCGCCGGTAAACAGCTAGAAGATGGCCGTACCTTGGCCGATTACAA 772718
Query 115465 CATTCAAAAAGAGTCTACTATACATATGGT 115494
|||||| ||||| || || | ||| ||||
Sbjct 772717 CATTCAGAAAGAATCAACCCTTCATTTGGT 772688
Score = 87.8 bits (96), Expect = 2e-12
Identities = 160/230 (70%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAA--ACGGAGTCCA 115343
||||| || |||||||| ||||| || || |||||||||||| | ||| |||| ||
Sbjct 14953516 ATGCAGATATTTGTCAAGACGCTTACCGGTAAAACCATTACCCTTGAAGTTGAGAGTTCA 14953457
Query 115344 GCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402
|||||| || ||||| || ||| || || || || ||||| ||||| |||
Sbjct 14953456 --GACACTATT-GACAATGTTAAAGCTAAGATCCAAGACAAGGAAGGAGTCCCTCCGGAT 14953400
Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462
|| || ||||| || | ||| || ||||| | || |||| || | || |||||
Sbjct 14953399 CAACAGAGACTAATCTTTGCTGGTAAACAGCTTGACGATGGTCGCACTCTTGCAGATTAC 14953340
Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512
||||| || ||||| || ||| | || |||| | || ||| |||| ||
Sbjct 14953339 AACATCCAGAAAGAATCAACTCTCCACTTGGTTCTCAGGTTGAGAGGTGG 14953290
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 425343963712840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |