Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq4 102 7e-17 seq5 87.8 1e-12 >seq4 Length=18585056 Score = 102 bits (112), Expect = 7e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || |||| || || ||||||||||| || ||||||||||||||| Sbjct 2719241 CCTCCACGCAGACGCAAGACCAAGTGGAGTGTGGACTCCTTCTGAATGTTGTAGTCGGCC 2719182 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| || | || || | |||||| || || | || | | ||| |||||| ||| Sbjct 2719181 AAAGTTCTGCCATCTTCAAGTTGTTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGAGGA 2719122 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||||||||| || || ||| ||||| | | | ||||| |||| Sbjct 2719121 ATACCCTCTTTGTCTTGGATCTTGGCT--TTCACGTTATCAATGGTGTCAGAACTCTCCA 2719064 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||| ||||| || |||| ||| || || ||||||||||| Sbjct 2719063 CCTCCAAAGTGATAGTTTTCCCAGTCAACGTCTTAACGAAAATCTGCAT 2719015 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || |||| || || || |||||||| || ||||||||||| ||| Sbjct 1278982 CCTCCACGGAGACGCAACACCAAGTGAAGTGTAGACTCCTTCTGAATGTTGTAGTCAGCC 1279041 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || || | |||||| || || | || | | ||| |||||| || Sbjct 1279042 AAAGTTCTACCATCTTCAAGTTGTTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGTGGG 1279101 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||||||||| || || ||| || || | | | | |||||| | |||| Sbjct 1279102 ATACCCTCTTTGTCCTGGATCTTGGCT--TTGACATTGTCGATAGTGTCAGAGCTCTCCA 1279159 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||| || ||||| |||| ||| |||||||| |||||||| Sbjct 1279160 CCTCCAAAGTGATAGTCTTTCCAGTCAACGTCTTGACAAAGATCTGCAT 1279208 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || ||||| || || | ||| || ||||||||||| || || |||||||| || Sbjct 2719013 CCACCACGGAGCCTGAGAACAAGATGAAGGGTGGACTCCTTCTGGATATTGTAGTCAGCA 2718954 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| || | |||||||| || || || || | || |||| ||| |||||| ||| Sbjct 2718953 AGAGTTCTGCCATCCTCCAACTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCCGGAGGA 2718894 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||||||||| || || || ||| || | | | | ||||| |||| Sbjct 2718893 ATACCCTCTTTGTCTTGGATCTTGGC--CTTGACGTTGTCGATGGTGTCAGAACTCTCCA 2718836 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | || || || ||||| || || ||||| || ||||||||||| Sbjct 2718835 CCTCAAGAGTAATCGTCTTTCCCGTTAGGGTTTTAACGAAAATCTGCAT 2718787 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || ||||| || |||| || || || |||||||| || ||||||||||||||| Sbjct 1278754 CCACCACGGAGCCTTAGCACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCC 1278813 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | ||||| | ||||| || || | || || ||||| |||||| ||| Sbjct 1278814 AAAGTACGACCATCCTCAAGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGG 1278873 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || || ||||| || || || |||||| | | | | |||||| | ||| Sbjct 1278874 ATACCTTCCTTGTCCTGGATCTTAGC--CTTCACGTTGTCAATGGTGTCGGAGCTCTCAA 1278931 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| | || ||||| ||||| || || || || || ||||||||||| Sbjct 1278932 CTTCAAGAGTAATGGTCTTTCCAGTGAGAGTCTTCACGAAAATCTGCAT 1278980 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || |||| ||| ||||| |||||||| || |||||||| || ||| Sbjct 2588506 CCTCCACGCAGACGCAAGACCAAATGAAGCGTAGACTCCTTCTGGATGTTGTAATCCGCC 2588565 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| || ||||||| | ||| || || || | || | || ||| |||||| ||| Sbjct 2588566 AAAGTTCTGCCGTCCTCAAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGA 2588625 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| || || || || || ||| || | | | | ||||| | |||| Sbjct 2588626 ATACCCTCCTTATCTTGGATCTTGGC--CTTGACGTTGTCAATGGTGTCAGAGCTCTCCA 2588683 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | || || || ||||| || || ||||| || ||||||||||| Sbjct 2588684 CCTCAAGAGTAATCGTCTTTCCCGTTAGGGTTTTAACGAAAATCTGCAT 2588732 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| || || || |||||||| || ||||||||||||||| Sbjct 2719925 CCACCACGAAGACGCAGGACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCC 2719866 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | ||||| | || || || || | || || ||||| |||||| ||| Sbjct 2719865 AAAGTACGTCCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGA 2719806 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || || ||||| || || || ||| || | | | | |||||| | ||| Sbjct 2719805 ATACCTTCCTTGTCCTGGATCTTGGC--CTTGACGTTGTCAATGGTGTCGGAGCTTTCCA 2719748 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| | ||||||||| |||||||||| || ||||| || |||||||| Sbjct 2719747 CTTCAAGGGTGATGGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 2719699 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || ||||| || || | ||| || ||||||||||| || ||||||||||| || Sbjct 1279210 CCACCACGGAGCCTGAGAACAAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCAGCA 1279269 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| || | |||||||| || || || || | || | || ||| |||||| ||| Sbjct 1279270 AGAGTTCTGCCATCCTCCAACTGCTTTCCAGCGAAGATCAACCTCTGCTGGTCCGGAGGA 1279329 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| || || || ||| || | | | | ||||| |||| Sbjct 1279330 ATACCCTCCTTGTCTTGGATCTTGGC--CTTGACGTTGTCGATGGTGTCAGAACTCTCCA 1279387 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | || || || ||||| || | || ||||| ||||||||||| Sbjct 1279388 CCTCAAGAGTAATCGTCTTTCCCGTTAAGGTCTTGACGAAAATCTGCAT 1279436 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || |||||||| || |||||||||||||||| || | ||| Sbjct 2588293 AGGACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTACGTCCATCC 2588352 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | || || || || | || || ||||| |||||| ||| | ||| || ||||| Sbjct 2588353 TCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATGCCTTCCTTGTCC 2588412 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || |||||| | | | |||||| | ||| ||| | ||||||| Sbjct 2588413 TGGATCTTAGC--CTTCACGTTATCAATGGTGTCGGAGCTCTCAACTTCAAGAGTGATGG 2588470 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | |||||||||| || || || || |||||||| Sbjct 2588471 TCTTTCCGGTCAAAGTCTTTACGAAGATCTGCAT 2588504 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || |||| || || ||||||||||| || ||||||||||| ||| Sbjct 2719469 CCTCCACGCAGACGCAAGACCAAGTGAAGTGTGGACTCCTTCTGAATGTTGTAGTCAGCC 2719410 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || || | ||| || || || | || | | ||| |||||| || Sbjct 2719409 AAAGTTCTTCCATCTTCAAGTTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGTGGG 2719350 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||||||||| || || ||| ||||| | | | ||||| |||| Sbjct 2719349 ATACCCTCTTTGTCCTGGATCTTGGCT--TTCACGTTATCAATGGTGTCAGAACTCTCCA 2719292 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| |||||||| |||||||| || || || || || |||||||| Sbjct 2719291 CCTCCAAAGTGATGGTCTTTCCGGTGAGAGTCTTCACGAAGATCTGCAT 2719243 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || |||| || || || |||||||| || |||||||| || ||| Sbjct 2719697 CCTCCACGCAGACGCAACACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGCC 2719638 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | |||||||||||||| || ||| | || | || ||| |||||| ||| Sbjct 2719637 AAAGTACGACCATCCTCCAATTGTTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGAGGG 2719578 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || || || || || || || |||||| | | | | ||||| | ||| Sbjct 2719577 ATTCCTTCCTTATCCTGGATCTTGGC--CTTCACGTTGTCAATGGTGTCAGAGCTCTCTA 2719520 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||| || |||||||| || || || || || |||||||| Sbjct 2719519 CCTCCAAAGTGATAGTCTTTCCGGTGAGAGTCTTCACGAAGATCTGCAT 2719471 >seq5 Length=26975502 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| || || ||||||||||| ||||||||||| || | ||| | |||| Sbjct 772457 AGCACCAAATGAAGGGTCGACTCCTTTTGAATGTTGTAGTCAGCAAGAGTTCTTCCGTCT 772516 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | || || || ||| | ||||| | ||| || ||| ||| | || || ||||| Sbjct 772517 TCAAGCTGCTTACCGGCAAAGATAAGTCTCTGCTGATCCGGAGGGATTCCTTCCTTGTCC 772576 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || |||||| || || | | | | |||||| | ||| |||| || |||| Sbjct 772577 TGGATCTTTGCT--TTGACGTTGTCAATAGTGTCAGAGCTCTCAACCTCCAAAGTAATGG 772634 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || || ||||| || |||||||| || ||||| Sbjct 772635 TCTTGCCAGTCAGAGTCTTGACAAAGATTTGCAT 772668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405087965440930