Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11]
7 sequences; 119,667,750 total letters
Query= NC_008035.3
Length=126629
Score E
Sequences producing significant alignments: (Bits) Value
seq4 102 7e-17
seq5 87.8 1e-12
>seq4
Length=18585056
Score = 102 bits (112), Expect = 7e-17
Identities = 161/229 (70%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
||||| || || | || |||| || || ||||||||||| || |||||||||||||||
Sbjct 2719241 CCTCCACGCAGACGCAAGACCAAGTGGAGTGTGGACTCCTTCTGAATGTTGTAGTCGGCC 2719182
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| || | || || | |||||| || || | || | | ||| |||||| |||
Sbjct 2719181 AAAGTTCTGCCATCTTCAAGTTGTTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGAGGA 2719122
Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886
| ||||||||||| || || ||| ||||| | | | ||||| ||||
Sbjct 2719121 ATACCCTCTTTGTCTTGGATCTTGGCT--TTCACGTTATCAATGGTGTCAGAACTCTCCA 2719064
Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|||| ||||| ||||| || |||| ||| || || |||||||||||
Sbjct 2719063 CCTCCAAAGTGATAGTTTTCCCAGTCAACGTCTTAACGAAAATCTGCAT 2719015
Score = 96.9 bits (106), Expect = 3e-15
Identities = 160/229 (70%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
||||| || || | || |||| || || || |||||||| || ||||||||||| |||
Sbjct 1278982 CCTCCACGGAGACGCAACACCAAGTGAAGTGTAGACTCCTTCTGAATGTTGTAGTCAGCC 1279041
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| | | || || | |||||| || || | || | | ||| |||||| ||
Sbjct 1279042 AAAGTTCTACCATCTTCAAGTTGTTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGTGGG 1279101
Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886
| ||||||||||| || || ||| || || | | | | |||||| | ||||
Sbjct 1279102 ATACCCTCTTTGTCCTGGATCTTGGCT--TTGACATTGTCGATAGTGTCAGAGCTCTCCA 1279159
Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|||| ||||| || ||||| |||| ||| |||||||| ||||||||
Sbjct 1279160 CCTCCAAAGTGATAGTCTTTCCAGTCAACGTCTTGACAAAGATCTGCAT 1279208
Score = 96.9 bits (106), Expect = 3e-15
Identities = 160/229 (70%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| || || ||||| || || | ||| || ||||||||||| || || |||||||| ||
Sbjct 2719013 CCACCACGGAGCCTGAGAACAAGATGAAGGGTGGACTCCTTCTGGATATTGTAGTCAGCA 2718954
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| || | |||||||| || || || || | || |||| ||| |||||| |||
Sbjct 2718953 AGAGTTCTGCCATCCTCCAACTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCCGGAGGA 2718894
Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886
| ||||||||||| || || || ||| || | | | | ||||| ||||
Sbjct 2718893 ATACCCTCTTTGTCTTGGATCTTGGC--CTTGACGTTGTCGATGGTGTCAGAACTCTCCA 2718836
Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| | || || || ||||| || || ||||| || |||||||||||
Sbjct 2718835 CCTCAAGAGTAATCGTCTTTCCCGTTAGGGTTTTAACGAAAATCTGCAT 2718787
Score = 93.3 bits (102), Expect = 3e-14
Identities = 159/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| || || ||||| || |||| || || || |||||||| || |||||||||||||||
Sbjct 1278754 CCACCACGGAGCCTTAGCACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCC 1278813
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| || | ||||| | ||||| || || | || || ||||| |||||| |||
Sbjct 1278814 AAAGTACGACCATCCTCAAGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGG 1278873
Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886
| || || ||||| || || || |||||| | | | | |||||| | |||
Sbjct 1278874 ATACCTTCCTTGTCCTGGATCTTAGC--CTTCACGTTGTCAATGGTGTCGGAGCTCTCAA 1278931
Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
||| | || ||||| ||||| || || || || || |||||||||||
Sbjct 1278932 CTTCAAGAGTAATGGTCTTTCCAGTGAGAGTCTTCACGAAAATCTGCAT 1278980
Score = 93.3 bits (102), Expect = 3e-14
Identities = 159/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
||||| || || | || |||| ||| ||||| |||||||| || |||||||| || |||
Sbjct 2588506 CCTCCACGCAGACGCAAGACCAAATGAAGCGTAGACTCCTTCTGGATGTTGTAATCCGCC 2588565
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| || ||||||| | ||| || || || | || | || ||| |||||| |||
Sbjct 2588566 AAAGTTCTGCCGTCCTCAAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGA 2588625
Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886
| ||||| || || || || || ||| || | | | | ||||| | ||||
Sbjct 2588626 ATACCCTCCTTATCTTGGATCTTGGC--CTTGACGTTGTCAATGGTGTCAGAGCTCTCCA 2588683
Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| | || || || ||||| || || ||||| || |||||||||||
Sbjct 2588684 CCTCAAGAGTAATCGTCTTTCCCGTTAGGGTTTTAACGAAAATCTGCAT 2588732
Score = 93.3 bits (102), Expect = 3e-14
Identities = 159/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| || || || | ||| |||| || || || |||||||| || |||||||||||||||
Sbjct 2719925 CCACCACGAAGACGCAGGACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCC 2719866
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| || | ||||| | || || || || | || || ||||| |||||| |||
Sbjct 2719865 AAAGTACGTCCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGA 2719806
Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886
| || || ||||| || || || ||| || | | | | |||||| | |||
Sbjct 2719805 ATACCTTCCTTGTCCTGGATCTTGGC--CTTGACGTTGTCAATGGTGTCGGAGCTTTCCA 2719748
Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
||| | ||||||||| |||||||||| || ||||| || ||||||||
Sbjct 2719747 CTTCAAGGGTGATGGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 2719699
Score = 87.8 bits (96), Expect = 1e-12
Identities = 158/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| || || ||||| || || | ||| || ||||||||||| || ||||||||||| ||
Sbjct 1279210 CCACCACGGAGCCTGAGAACAAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCAGCA 1279269
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| || | |||||||| || || || || | || | || ||| |||||| |||
Sbjct 1279270 AGAGTTCTGCCATCCTCCAACTGCTTTCCAGCGAAGATCAACCTCTGCTGGTCCGGAGGA 1279329
Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886
| ||||| ||||| || || || ||| || | | | | ||||| ||||
Sbjct 1279330 ATACCCTCCTTGTCTTGGATCTTGGC--CTTGACGTTGTCGATGGTGTCAGAACTCTCCA 1279387
Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| | || || || ||||| || | || ||||| |||||||||||
Sbjct 1279388 CCTCAAGAGTAATCGTCTTTCCCGTTAAGGTCTTGACGAAAATCTGCAT 1279436
Score = 84.2 bits (92), Expect = 2e-11
Identities = 148/214 (69%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| |||| || || || |||||||| || |||||||||||||||| || | |||
Sbjct 2588293 AGGACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTACGTCCATCC 2588352
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842
|| | || || || || | || || ||||| |||||| ||| | ||| || |||||
Sbjct 2588353 TCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATGCCTTCCTTGTCC 2588412
Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901
|| || || |||||| | | | |||||| | ||| ||| | |||||||
Sbjct 2588413 TGGATCTTAGC--CTTCACGTTATCAATGGTGTCGGAGCTCTCAACTTCAAGAGTGATGG 2588470
Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
| |||||||||| || || || || ||||||||
Sbjct 2588471 TCTTTCCGGTCAAAGTCTTTACGAAGATCTGCAT 2588504
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
||||| || || | || |||| || || ||||||||||| || ||||||||||| |||
Sbjct 2719469 CCTCCACGCAGACGCAAGACCAAGTGAAGTGTGGACTCCTTCTGAATGTTGTAGTCAGCC 2719410
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| | | || || | ||| || || || | || | | ||| |||||| ||
Sbjct 2719409 AAAGTTCTTCCATCTTCAAGTTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGTGGG 2719350
Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886
| ||||||||||| || || ||| ||||| | | | ||||| ||||
Sbjct 2719349 ATACCCTCTTTGTCCTGGATCTTGGCT--TTCACGTTATCAATGGTGTCAGAACTCTCCA 2719292
Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|||| |||||||| |||||||| || || || || || ||||||||
Sbjct 2719291 CCTCCAAAGTGATGGTCTTTCCGGTGAGAGTCTTCACGAAGATCTGCAT 2719243
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
||||| || || | || |||| || || || |||||||| || |||||||| || |||
Sbjct 2719697 CCTCCACGCAGACGCAACACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGCC 2719638
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| || | |||||||||||||| || ||| | || | || ||| |||||| |||
Sbjct 2719637 AAAGTACGACCATCCTCCAATTGTTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGAGGG 2719578
Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886
| || || || || || || || |||||| | | | | ||||| | |||
Sbjct 2719577 ATTCCTTCCTTATCCTGGATCTTGGC--CTTCACGTTGTCAATGGTGTCAGAGCTCTCTA 2719520
Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|||| ||||| || |||||||| || || || || || ||||||||
Sbjct 2719519 CCTCCAAAGTGATAGTCTTTCCGGTGAGAGTCTTCACGAAGATCTGCAT 2719471
>seq5
Length=26975502
Score = 87.8 bits (96), Expect = 1e-12
Identities = 149/214 (70%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| |||| ||| || || ||||||||||| ||||||||||| || | ||| | ||||
Sbjct 772457 AGCACCAAATGAAGGGTCGACTCCTTTTGAATGTTGTAGTCAGCAAGAGTTCTTCCGTCT 772516
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842
|| | || || || ||| | ||||| | ||| || ||| ||| | || || |||||
Sbjct 772517 TCAAGCTGCTTACCGGCAAAGATAAGTCTCTGCTGATCCGGAGGGATTCCTTCCTTGTCC 772576
Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901
|| |||||| || || | | | | |||||| | ||| |||| || ||||
Sbjct 772577 TGGATCTTTGCT--TTGACGTTGTCAATAGTGTCAGAGCTCTCAACCTCCAAAGTAATGG 772634
Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
| || || ||||| || |||||||| || |||||
Sbjct 772635 TCTTGCCAGTCAGAGTCTTGACAAAGATTTGCAT 772668
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 405087965440930
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |