Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq7 589 2e-163 seq2 315 8e-81 seq6 306 4e-78 >seq7 Length=154478 Score = 589 bits (652), Expect = 2e-163 Identities = 717/970 (74%), Gaps = 8/970 (1%) Strand=Plus/Minus Query 166081 AACCGTCTTTATGTTGGTTGGTTTGGCACACTGATGATTCCAACTCTGTTGGCAGCAACC 166140 ||||||||||| |||| |||||||| ||||||| || || | ||| | ||||| Sbjct 1369 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT 1310 Query 166141 ATCTGTTTC-ATCGTCGCTTTCGTAGCGGCACCTCCTGTCGATATCGATGGGATCCGTGA 166199 ||||||| || |||| ||| | || || ||||| || ||||| ||||| || ||||| Sbjct 1309 -TCTGTTTTTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGA 1251 Query 166200 GCCCGTAGCAGGCTCTCTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCC--C 166257 || || | || ||||| | || || ||||| || || || ||||| || | || | Sbjct 1250 ACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCCGGTGCCATTATTCCTAC 1191 Query 166258 TCCTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCAGCATCACTTGATGAA 166317 | || || || ||||| | || || || || ||||||||||| ||||| |||||||| Sbjct 1190 TTCTGCA--GCTATTGGATTGCATTTTTACCCAATCTGGGAAGCTGCATCCGTTGATGAA 1133 Query 166318 TGGCTTTATAACGGTGGTCCTTTCCAGCTCGTAGTCTTCCACTTCCTCATCGGCATCTAT 166377 ||||| || ||||| ||||||| | || | || | ||||| | | || | | Sbjct 1132 TGGCTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCT 1073 Query 166378 GCCTACATGGGTCGTGAATGGGAATTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGC 166437 || ||||||||||| |||||| | || ||| || |||||||||||||||||| Sbjct 1072 TGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCT 1013 Query 166438 GTAGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGT 166497 || ||||| || || ||||||||||| || | || || ||| || ||||||| | ||| Sbjct 1012 GTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGCTGTTTTCTTGATCTATCCAATTGGT 953 Query 166498 CAAGGTTCTTTCTCTGACGCAATGCCCCTGGGTATCAGTGGCACCTTCAACTACATGCTT 166557 || || ||| ||||| | ||||| || || ||| ||| || ||||||| ||| || Sbjct 952 CAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATT 893 Query 166558 GTCTTCCAAGCAGAGCACAACATCCTCATGCACCCCTTCCATATGCTGGGTGTAGCAGGT 166617 || ||||| || ||||||||||| || |||||||| || || ||| | |||||||| ||| Sbjct 892 GTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGT 833 Query 166618 GTATTCGGTGGGTCACTTTTCTCGGCAATGCACGGCAGTCTCGTTACTTCCTCGCTCG-T 166676 |||||||| || || ||||| || ||||| || | || ||||| | | | | | Sbjct 832 GTATTCGGCGGCTCCCTTTTTAGTGCTATGCATGGTTCCTTGGTAACTTC-TAGTTTGAT 774 Query 166677 CCGTGAGACCACTGAAACTGAGTCTCAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGA 166736 | | || ||||| |||| ||| ||| || | ||||||| || || ||||||||||| Sbjct 773 CAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGGCAAGAAGAAGA 714 Query 166737 GACCTACAACATCGTGGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTC 166796 || |||||||| || |||||||| ||||| || || || |||| |||||||| ||| Sbjct 713 AACTTACAACATTGTAGCTGCTCACGGTTATTTTGGCCGATTGATTTTCCAATATGCTAG 654 Query 166797 CTTCAACAACTCTCGCTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTG 166856 |||||||| ||||| || | || |||||| | || || ||||| || || ||||| || Sbjct 653 TTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTG 594 Query 166857 GTTTACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCA 166916 |||||||||| | ||| |||| || ||||| |||||||| || |||||||| |||||||| Sbjct 593 GTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCA 534 Query 166917 GTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGATGTCCTCAACCGTGC 166976 || | | ||| |||| || ||||| | || |||||||| ||| | | |||||||| Sbjct 533 ATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACTTGGGCTGATATTATTAACCGTGC 474 Query 166977 TGGTCTGGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCCCTCTGGATCTTGC 167036 | || ||||||||||| ||||| || ||||||||||||||||||||||| || || || Sbjct 473 TAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 414 Query 167037 TGCTGCTGAG 167046 ||||| |||| Sbjct 413 TGCTGTTGAG 404 Score = 547 bits (606), Expect = 8e-151 Identities = 734/1017 (72%), Gaps = 8/1017 (1%) Strand=Plus/Plus Query 167300 TTTGATGTCCTGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGA 167359 |||||| | ||||||||||| | | |||||||| || ||||| || |||||||| Sbjct 32756 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 32815 Query 167360 TTACTTCTTTTTCCCACTGCTTATCTGGCAATTGGTGGCTGGCTTACTGGCACGACGTTT 167419 || | || ||||| ||| ||| | || | || || ||| | || || || || ||| Sbjct 32816 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 32875 Query 167420 GTTACGAGCTGGTATACCCACGGGTTGGC--GT--CTAGTTACCTTGAGGGTGCTAATTT 167475 || || |||||||| || || ||||| || ||| ||| ||| ||| ||||| Sbjct 32876 GTAACTTCATGGTATACTCATGGATTGGCCAGTTCCTATTTAGA---AGGTTGC-AATTT 32931 Query 167476 TCTCACGGCAGCAGTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTG 167535 | | || || ||||| || ||||||||| | | | | |||||| | | |||| || Sbjct 32932 TTTAACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTG 32991 Query 167536 GGGTCCTGAGTCTCAGGGGGATTTCATCAGGTGGTGCCAGCTTGGGGGACTCTGGGCTTT 167595 ||||||||| | || || ||||| | | ||||| || | || || || |||||||| Sbjct 32992 GGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTATGGGCTTT 33051 Query 167596 TGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGATTTATGCTTCGGCAATTTGAGATAAG 167655 ||| || |||||||| || || || | ||||| |||||| | || |||||||| | Sbjct 33052 TGTTGCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGC 33111 Query 167656 TAGACTAGTAGGTATCCGTCCTTACAATGCGATTGCTTTTTCTGGTCCGATTGCTGTCTT 167715 | || || | || ||||| ||||| || || || |||||||| |||||||| || Sbjct 33112 TCGATCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCCATTGCTGTTTT 33171 Query 167716 TGTGTCTGTTTTTCTCATCTATCCTCTCGGACAGTCCAGTTGGTTCTTTGCACCGTCGTT 167775 ||| ||||| || || || ||||| || || || || ||||||||||||| || || Sbjct 33172 TGTTTCTGTCTTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTT 33231 Query 167776 TGGTGTTGCAGCGATATTTAGATTCCTACTATTCCTACAGGGTTTCCATAACTGGACGCT 167835 |||||| || || |||||| ||||| | || || | || || || ||||| ||||| | Sbjct 33232 TGGTGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATT 33291 Query 167836 CAACCCTTTCCATATGATGGGAGTTGCTGGTATCCTAGGCGGTGCATTGCTTTCTGCAAT 167895 ||||| || |||||||||||||| || ||| | || |||| || |||| | || || Sbjct 33292 GAACCCATTTCATATGATGGGAGTCGCCGGTGTACTGGGCGCGGCTCTGCTATGCGCTAT 33351 Query 167896 CCATGGTGTTACAGTAGAGAATACTCTGTATGAAGATGGTGAGCAAGCAAACACTTTCAA 167955 ||||||| ||| ||||| |||||| | | |||||||||||| ||||| || ||| Sbjct 33352 TCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCG 33411 Query 167956 AGCATTTGATACGACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGATTCTG 168015 || ||| | | ||||| | || ||||||||||| |||||||| |||||||| || || Sbjct 33412 TGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTG 33471 Query 168016 GTCTCAAATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTTTT 168075 ||| ||||| ||||| ||||||| |||||| |||||||| || ||||||||| | || Sbjct 33472 GTCACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATT 33531 Query 168076 CGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTTAATCT 168135 || || || | || | |||| ||| || |||| | ||||| | || | || || Sbjct 33532 TGTACCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTTTAGCTTTGAACCT 33591 Query 168136 TCGTGCTTATGACTTTGTGTCTCAGGAAGTTAGAGCAGCAGAGGATCCAGAGTTTGAAAC 168195 ||||| |||||||| || || |||||| | | ||||| || |||||||| ||||| || Sbjct 33592 ACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCAGAATTTGAGAC 33651 Query 168196 TTTCTATACGAAAAACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAGTAGA 168255 ||||||||| ||||| || || | || ||||| | ||||| |||||||| | ||| Sbjct 33652 TTTCTATACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGA 33711 Query 168256 CCAACCACATGAAAACTTTGTATTCCCAGAAGAAGTATTGCCAAGAGGCAACGCTCT 168312 || || ||||||||| || ||||||| || || || | ||| | || |||||||| Sbjct 33712 TCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 33768 >seq2 Length=19698289 Score = 315 bits (348), Expect = 8e-81 Identities = 362/487 (74%), Gaps = 10/487 (2%) Strand=Plus/Minus Query 166561 TTCCAAGCAGAGCACAACATCCTCATGCACCCCTTCCATATGCTGGGTGTAGCAGGTGTA 166620 ||||| || ||||||||||| || |||||||| || || ||| | |||||||| |||||| Sbjct 3332065 TTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 3332006 Query 166621 TTCGGTGGGTCACTTTTCTCGGCAATGCACGGCAGTCTCGTTACTTCCTCGCTCG-TCCG 166679 ||||| || || || || || || || || || | || | || | | | || | Sbjct 3332005 TTCGGCGGCTCCCTATTTAGTGCTATACATGGGTTCCTTGGTAACTTCTAGTTTGATCAG 3331946 Query 166680 TGAGACCACTGAAACTGAGTCTCAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGAC 166739 || |||| |||| ||| ||| || | ||||||| || |||||||||||| | || Sbjct 3331945 GGAAACCATAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAATAAAC 3331886 Query 166740 CTACAACATCGTGGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTT 166799 |||||||| || |||||||||||||| || || || ||||||||| | | Sbjct 3331885 TTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCGTT---------T 3331835 Query 166800 CAACAACTCTCGCTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTT 166859 |||||| ||||| || | || |||||| | || || ||||| || || ||||| ||||| Sbjct 3331834 CAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTT 3331775 Query 166860 TACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTC 166919 ||||||| | ||| ||||||| ||||| |||||||| || ||||| || |||||||| || Sbjct 3331774 TACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTAAATTTCAACCAATC 3331715 Query 166920 CATCATCGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGATGTCCTCAACCGTGCTGG 166979 | | ||| |||| || ||||| | || |||||||| ||| | | ||||||||| Sbjct 3331714 AGTAGTTGATAGTCAAGGGCGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAA 3331655 Query 166980 TCTGGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCCCTCTGGATCTTGCTGC 167039 | ||||| ||||| ||||| || ||||||||||||||||||||||| || || ||||| Sbjct 3331654 CTTTGGTATAGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGC 3331595 Query 167040 TGCTGAG 167046 || |||| Sbjct 3331594 TGTTGAG 3331588 >seq6 Length=366924 Score = 306 bits (338), Expect = 4e-78 Identities = 360/487 (74%), Gaps = 10/487 (2%) Strand=Plus/Plus Query 166561 TTCCAAGCAGAGCACAACATCCTCATGCACCCCTTCCATATGCTGGGTGTAGCAGGTGTA 166620 ||||| || |||||| ||| || |||||||| || || ||| | |||||||| |||||| Sbjct 334345 TTCCAGGCTGAGCACTTCATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 334404 Query 166621 TTCGGTGGGTCACTTTTCTCGGCAATGCACGGCAGTCTCGTTACTTCCTCGCTCG-TCCG 166679 ||||| || || || || || || || || || | || | || | | | || | Sbjct 334405 TTCGGCGGCTCCCTATTTAGTGCTATACATGGGTTCCTTGGTAACTTCTAGTTTGATCAG 334464 Query 166680 TGAGACCACTGAAACTGAGTCTCAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGAC 166739 || |||| |||| ||| ||| || | ||||||| || |||||||||||| | || Sbjct 334465 GGAAACCATAGAAAATGAATCTGCTAATCAAGGTTACAGATTCGGTCAAGAAGAATAAAC 334524 Query 166740 CTACAACATCGTGGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTT 166799 |||||||| || |||||||||||||| || || || ||||||||| | | Sbjct 334525 TTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCGTT---------T 334575 Query 166800 CAACAACTCTCGCTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTT 166859 |||||| ||||| || | || |||||| | || || ||||| || || ||||| ||||| Sbjct 334576 CAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTT 334635 Query 166860 TACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTC 166919 ||||||| | ||| ||||||| ||||| |||||||| || ||||| || |||||||| || Sbjct 334636 TACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTAAATTTCAACCAATC 334695 Query 166920 CATCATCGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGATGTCCTCAACCGTGCTGG 166979 | | ||| |||| || ||||| | || |||||||| ||| | | ||||||||| Sbjct 334696 AGTAGTTGATAGTCAAGGGCGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAA 334755 Query 166980 TCTGGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCCCTCTGGATCTTGCTGC 167039 | ||||| ||||| ||||| || ||||||||||||||||||||||| || || ||||| Sbjct 334756 CTTTGGTATAGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGC 334815 Query 167040 TGCTGAG 167046 || |||| Sbjct 334816 TGTTGAG 334822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567231950367200