Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11]
7 sequences; 119,667,750 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq5 210 2e-49
seq3 131 2e-25
seq4 96.9 4e-15
seq1 84.2 2e-11
>seq5
Length=26975502
Score = 210 bits (232), Expect = 2e-49
Identities = 400/576 (69%), Gaps = 16/576 (3%)
Strand=Plus/Minus
Query 93112 ACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTT 93171
||||||||||| || ||||| || || || || | || || | | ||||||||
Sbjct 16408775 ACCTTCGTCTCTCGAAATCAATTCGTTTGAAAAAGTGAGTCCAGGCATTAAACCTCGTTT 16408716
Query 93172 CTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAA 93231
||| | ||| ||||| ||| ||| ||||| || || ||||||||||| ||| |||||
Sbjct 16408715 CTTCAACCAGAATATCGAACAAAAGCTACCGGAGAAGAATATACCTTCAACGCAAGCAAA 16408656
Query 93232 TGCCACAATACGTTCGGCAAAA-TTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAAT 93290
|| || || | || || || |||| | || | | |||||||||| | |||||| |
Sbjct 16408655 CGCTACGATTCTCTCAGCGAAGCTTTGAG--AT--CCGTTGATCCATTTCATAGCCCATT 16408600
Query 93291 CGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGT 93350
| ||||||||| | | ||||| | |||||||| || ||| || | ||||| ||| |
Sbjct 16408599 CTGCTTTTTTCGTCA--CAAGGAATGGTTTCGATTGCACGAAAAAGATGATCTCTCTCTT 16408542
Query 93351 CCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCA 93410
||| || || || |||| | ||| |||||| || || || | |||||| |
Sbjct 16408541 TGTTGTCTTTGATATACGTGTCGAGAAGGAGACTATACATCTCGGAGTGAATATTCTCAA 16408482
Query 93411 TTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAA-AAT 93469
| || ||||||||||||||||| | |||||| | |||||| || || || | |||
Sbjct 16408481 TCGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTGAGATCTGAACATCG-GACATGAAT 16408423
Query 93470 CTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGC 93529
|| | |||||| || || || || || ||||| || || || || | | ||
Sbjct 16408422 CTAGTTGAGAGATTCTCGAGAACGATTCCGTCTGATGCGGCGAAGAAGGCGAGGACGTGT 16408363
Query 93530 TTTATAAAATGTTTCTCATCATCTTTAAGC---TTATCCCAATCG-GATAGATCTTTTGA 93585
|| || || || || || | | || || ||||| ||| ||| | |||| ||
Sbjct 16408362 TTAATGAAGTGACGTTCGTCGTTGGTTAGTGAGTTTTCCCAGTCGCGATTG-TCTTGAGA 16408304
Query 93586 AAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATAT 93645
||||||||||||||| | ||||| || |||||||| ||||| |||||||| ||||| ||
Sbjct 16408303 GAGATCGACTTCTTCGGCTGTCCAGAAGGATGCTTCGGCTTTCTTGTACATCTCCCAAAT 16408244
Query 93646 GTCTTGATATTGAATTGGAAATATGACA-AAACGAT 93680
| | | ||||| ||||| || || ||| || ||||
Sbjct 16408243 CTGTGGGTATTGGATTGGGAACAT-ACAGAATCGAT 16408209
Score = 91.5 bits (100), Expect = 2e-13
Identities = 81/99 (82%), Gaps = 8/99 (8%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320
||||||||||||||||||||||||||||||||| | ||| |||||| | ||| ||
Sbjct 2411147 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGG 2411204
Query 126321 GCGTGGGTTCGAACCCCACACCTGACA--AATTATTATT 126357
|||||||||| || |||||| |||||| ||| |||||
Sbjct 2411205 GCGTGGGTTCAAATCCCACATCTGACATTCATTTTTATT 2411243
Score = 91.5 bits (100), Expect = 2e-13
Identities = 73/87 (84%), Gaps = 6/87 (7%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320
||||||||||||||||||||||||||||||||| | ||| |||||| | ||| ||
Sbjct 2898951 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGG 2898894
Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347
|||||||||| || |||||| ||||||
Sbjct 2898893 GCGTGGGTTCAAATCCCACATCTGACA 2898867
Score = 86.0 bits (94), Expect = 7e-12
Identities = 87/109 (80%), Gaps = 11/109 (10%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320
||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | |
Sbjct 8906415 AGTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTAAGAGG 8906472
Query 126321 GCGTGGGTTCGAACCCCACACCTGACA---AATTATTATTGGAATTTTT 126366
|||||||||| || ||||| |||||| |||| ||||| |||||||
Sbjct 8906473 GCGTGGGTTCAAATCCCACTTCTGACATTTAATT-TTATT-AAATTTTT 8906519
Score = 86.0 bits (94), Expect = 7e-12
Identities = 72/87 (83%), Gaps = 6/87 (7%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320
||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | |
Sbjct 16638165 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTAAGAGG 16638222
Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347
|||||||||| |||||||| ||||||
Sbjct 16638223 GCGTGGGTTCAAACCCCACTTCTGACA 16638249
Score = 84.2 bits (92), Expect = 2e-11
Identities = 74/90 (82%), Gaps = 3/90 (3%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324
|| ||| |||||||||||||||||||||||||||||| | |||||| || | ||||
Sbjct 1853382 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 1853325
Query 126325 GGGTTCGAACCCCACACCTGACAAATTATT 126354
|||||| || |||||| ||| | |||||||
Sbjct 1853324 GGGTTCAAATCCCACAGCTGTC-AATTATT 1853296
Score = 84.2 bits (92), Expect = 2e-11
Identities = 73/90 (81%), Gaps = 2/90 (2%)
Strand=Plus/Plus
Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327
||| |||||||||||||||||||||||||||||| | |||||| || | |||||||
Sbjct 18790310 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 18790367
Query 126328 TTCGAACCCCACACCTGACAAATTATTATT 126357
||| || |||||| ||| ||| || || ||
Sbjct 18790368 TTCAAATCCCACAGCTGTCAATTTGTTTTT 18790397
Score = 84.2 bits (92), Expect = 2e-11
Identities = 83/106 (78%), Gaps = 6/106 (6%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320
||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | |
Sbjct 21300964 AGTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTAAGAGG 21300907
Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTT 126366
|||||||||| || ||||| |||||| || | ||| ||||||
Sbjct 21300906 GCGTGGGTTCAAATCCCACTTCTGACATTTTTATTTTGTTATTTTT 21300861
>seq3
Length=23459830
Score = 131 bits (144), Expect = 2e-25
Identities = 310/462 (67%), Gaps = 10/462 (2%)
Strand=Plus/Plus
Query 93213 TACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGA 93272
||||||| ||| || || || | || |||||||| ||| | ||| | | ||
Sbjct 9980547 TACCTTCGACGCAAGCGAAAGCGATGATTCGTTCGGCGAAAGTCTGAGAA---CCGTCGA 9980603
Query 93273 TCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAA 93332
||||||| | |||||| | ||||| || | ||||| | |||||| || || ||
Sbjct 9980604 TCCATTTCATAGCCCATTGAGCTTTCTTGGCGACGCAAGGGATTGTTTCAATGGCACGAA 9980663
Query 93333 ATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTT 93392
| || | ||||| ||| | |||| || || ||||||| | ||| |||||| |
Sbjct 9980664 AGAGATGATCTCTCTCTTTGTTATCTTTGATATAAGTATCGAGAAGGAGACTATACATCT 9980723
Query 93393 CAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCT 93452
| || |||| || || || || || ||||| ||||||||| | || || | || |
Sbjct 9980724 CCGAGTGGATGTTTTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCAGAGACTT 9980783
Query 93453 GCACTTCTTGAGAA-AATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCa 93511
| || || || | || | ||||||| || || || || || ||||| ||
Sbjct 9980784 GAACATCG-GACATGAAGCGAGAAGCGAGATTCTCTAGTACGATTCCGTCAGATGCAGCG 9980842
Query 93512 aaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGC---TTATCCCAA 93568
|| ||||| | | || || || || || ||| | || || || || |||||
Sbjct 9980843 AAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTCACCGTCGTTGAGACTGTTTTCCCAG 9980902
Query 93569 TCG-GATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTT 93627
||| | | | |||| ||| ||||| ||||||||| | ||||| || |||||||| |||||
Sbjct 9980903 TCGCGGTTG-TCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAATGATGCTTCGGCTTT 9980961
Query 93628 TTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATAT 93669
||||||||| ||||| || | | | || |||||||| || ||
Sbjct 9980962 TTTGTACATTTCCCAGATCTGTGGGTAGTGAATTGGGAACAT 9981003
Score = 109 bits (120), Expect = 6e-19
Identities = 208/301 (69%), Gaps = 4/301 (1%)
Strand=Plus/Plus
Query 92924 CTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGT 92983
||||| || ||||| || || |||||| ||||||||||| ||||| || | | |||
Sbjct 9980170 CTATCCGCAACAAACTCAATATACTGACTCATCAAATCACGGTTCATCCCAACCA-ACGC 9980228
Query 92984 ACA-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTC 93042
|| || || |||||| || || ||| |||||||| | || || || | ||||
Sbjct 9980229 GCACGGAAGCGCGTCGCACACAAACTCTCTCTCGATTTCGACCGCGTCGCAGACGATTGA 9980288
Query 93043 TATTACTCTACTATTTGGTGGTTTTTGTACGACATAAT-TGTACATTAAGCACGCAAAGT 93101
| | || | | || | | ||||| || |||| | || || || || |
Sbjct 9980289 TTTCACGCGT-TCTTCGCTAAGCTTTGTTTTGAGTAGCGTGTAGAGTAGACAAGCGAAAT 9980347
Query 93102 CGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACA 93161
| |||||||||||||| ||||| ||||| || || ||||||||| || || | |
Sbjct 9980348 CACAGTGTAAACCTTCGTCACGTGAGATCAATTCGTTTGAGAATGTTAATCCAGGCATGA 9980407
Query 93162 GTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCA 93221
||||||||||||| ||||| || |||||| ||| || || || || || |||||||| |
Sbjct 9980408 GTCCTCGTTTCTTCAGCCAGAAGATTGAACAAAAGCTTCCGGAGAAGAAGATACCTTCAA 9980467
Query 93222 C 93222
|
Sbjct 9980468 C 9980468
>seq4
Length=18585056
Score = 96.9 bits (106), Expect = 4e-15
Identities = 76/90 (84%), Gaps = 2/90 (2%)
Strand=Plus/Minus
Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323
||||| ||||||||||||||||||||||||| ||||| |||||| | || || | |||
Sbjct 6837643 GTCAGTATGGCCGAGTGGTCTAAGGCGCCAGACTTAAGTTCTGGTCCTCTTACGAGGGCG 6837584
Query 126324 TGGGTTCGAACCCCACACCTGACAAATTAT 126353
||||||| |||||||| ||||||| ||||
Sbjct 6837583 TGGGTTCAAACCCCACTGCTGACAATTTAT 6837554
Score = 91.5 bits (100), Expect = 2e-13
Identities = 76/92 (83%), Gaps = 6/92 (7%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320
||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | |
Sbjct 6837858 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTAAGAGG 6837801
Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTA 126352
|||||||||| |||||||| ||||||| |||
Sbjct 6837800 GCGTGGGTTCAAACCCCACTTCTGACAATTTA 6837769
Score = 84.2 bits (92), Expect = 2e-11
Identities = 79/98 (81%), Gaps = 7/98 (7%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320
||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | |
Sbjct 12320109 AGTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTAAGAGG 12320166
Query 126321 GCGTGGGTTCGAACCCCACACCTGACA-AATTATTATT 126357
|||||||||| || ||||| |||||| ||||||||
Sbjct 12320167 GCGTGGGTTCAAATCCCACTTCTGACATTTTTATTATT 12320204
Score = 82.4 bits (90), Expect = 9e-11
Identities = 69/84 (82%), Gaps = 2/84 (2%)
Strand=Plus/Minus
Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGCG 126323
|||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | |||
Sbjct 13076657 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGTAAGAGGGCG 13076598
Query 126324 TGGGTTCGAACCCCACACCTGACA 126347
||||||| |||||||| ||||||
Sbjct 13076597 TGGGTTCAAACCCCACTTCTGACA 13076574
>seq1
Length=30427671
Score = 84.2 bits (92), Expect = 2e-11
Identities = 73/90 (81%), Gaps = 2/90 (2%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324
|| ||| |||||||||||||||||||||||||||||| | |||||| || | ||||
Sbjct 3881528 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 3881585
Query 126325 GGGTTCGAACCCCACACCTGACAAATTATT 126354
|||||| || |||||| ||| ||| || ||
Sbjct 3881586 GGGTTCAAATCCCACAGCTGTCAATTTCTT 3881615
Score = 84.2 bits (92), Expect = 2e-11
Identities = 71/86 (83%), Gaps = 6/86 (7%)
Strand=Plus/Minus
Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGAG 126321
|||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | |
Sbjct 6948943 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTAAGAGGG 6948886
Query 126322 CGTGGGTTCGAACCCCACACCTGACA 126347
||||||||| |||||||| ||||||
Sbjct 6948885 CGTGGGTTCAAACCCCACTTCTGACA 6948860
Score = 82.4 bits (90), Expect = 9e-11
Identities = 77/96 (80%), Gaps = 3/96 (3%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGC 126322
||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | ||
Sbjct 23802552 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAGGGC 23802611
Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATTG 126358
|||||||| || ||||| ||||| | ||||| |||
Sbjct 23802612 GTGGGTTCAAATCCCACTTCTGAC-ATTTATTTTTG 23802646
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556860751274680
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