Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq5 210 2e-49 seq3 131 2e-25 seq4 96.9 4e-15 seq1 84.2 2e-11 >seq5 Length=26975502 Score = 210 bits (232), Expect = 2e-49 Identities = 400/576 (69%), Gaps = 16/576 (3%) Strand=Plus/Minus Query 93112 ACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTT 93171 ||||||||||| || ||||| || || || || | || || | | |||||||| Sbjct 16408775 ACCTTCGTCTCTCGAAATCAATTCGTTTGAAAAAGTGAGTCCAGGCATTAAACCTCGTTT 16408716 Query 93172 CTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAA 93231 ||| | ||| ||||| ||| ||| ||||| || || ||||||||||| ||| ||||| Sbjct 16408715 CTTCAACCAGAATATCGAACAAAAGCTACCGGAGAAGAATATACCTTCAACGCAAGCAAA 16408656 Query 93232 TGCCACAATACGTTCGGCAAAA-TTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAAT 93290 || || || | || || || |||| | || | | |||||||||| | |||||| | Sbjct 16408655 CGCTACGATTCTCTCAGCGAAGCTTTGAG--AT--CCGTTGATCCATTTCATAGCCCATT 16408600 Query 93291 CGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGT 93350 | ||||||||| | | ||||| | |||||||| || ||| || | ||||| ||| | Sbjct 16408599 CTGCTTTTTTCGTCA--CAAGGAATGGTTTCGATTGCACGAAAAAGATGATCTCTCTCTT 16408542 Query 93351 CCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCA 93410 ||| || || || |||| | ||| |||||| || || || | |||||| | Sbjct 16408541 TGTTGTCTTTGATATACGTGTCGAGAAGGAGACTATACATCTCGGAGTGAATATTCTCAA 16408482 Query 93411 TTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAA-AAT 93469 | || ||||||||||||||||| | |||||| | |||||| || || || | ||| Sbjct 16408481 TCGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTGAGATCTGAACATCG-GACATGAAT 16408423 Query 93470 CTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGC 93529 || | |||||| || || || || || ||||| || || || || | | || Sbjct 16408422 CTAGTTGAGAGATTCTCGAGAACGATTCCGTCTGATGCGGCGAAGAAGGCGAGGACGTGT 16408363 Query 93530 TTTATAAAATGTTTCTCATCATCTTTAAGC---TTATCCCAATCG-GATAGATCTTTTGA 93585 || || || || || || | | || || ||||| ||| ||| | |||| || Sbjct 16408362 TTAATGAAGTGACGTTCGTCGTTGGTTAGTGAGTTTTCCCAGTCGCGATTG-TCTTGAGA 16408304 Query 93586 AAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATAT 93645 ||||||||||||||| | ||||| || |||||||| ||||| |||||||| ||||| || Sbjct 16408303 GAGATCGACTTCTTCGGCTGTCCAGAAGGATGCTTCGGCTTTCTTGTACATCTCCCAAAT 16408244 Query 93646 GTCTTGATATTGAATTGGAAATATGACA-AAACGAT 93680 | | | ||||| ||||| || || ||| || |||| Sbjct 16408243 CTGTGGGTATTGGATTGGGAACAT-ACAGAATCGAT 16408209 Score = 91.5 bits (100), Expect = 2e-13 Identities = 81/99 (82%), Gaps = 8/99 (8%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||||||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 2411147 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGG 2411204 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA--AATTATTATT 126357 |||||||||| || |||||| |||||| ||| ||||| Sbjct 2411205 GCGTGGGTTCAAATCCCACATCTGACATTCATTTTTATT 2411243 Score = 91.5 bits (100), Expect = 2e-13 Identities = 73/87 (84%), Gaps = 6/87 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||||||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 2898951 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGG 2898894 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || |||||| |||||| Sbjct 2898893 GCGTGGGTTCAAATCCCACATCTGACA 2898867 Score = 86.0 bits (94), Expect = 7e-12 Identities = 87/109 (80%), Gaps = 11/109 (10%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | Sbjct 8906415 AGTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTAAGAGG 8906472 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA---AATTATTATTGGAATTTTT 126366 |||||||||| || ||||| |||||| |||| ||||| ||||||| Sbjct 8906473 GCGTGGGTTCAAATCCCACTTCTGACATTTAATT-TTATT-AAATTTTT 8906519 Score = 86.0 bits (94), Expect = 7e-12 Identities = 72/87 (83%), Gaps = 6/87 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | Sbjct 16638165 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTAAGAGG 16638222 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| |||||||| |||||| Sbjct 16638223 GCGTGGGTTCAAACCCCACTTCTGACA 16638249 Score = 84.2 bits (92), Expect = 2e-11 Identities = 74/90 (82%), Gaps = 3/90 (3%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 1853382 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 1853325 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||| || |||||| ||| | ||||||| Sbjct 1853324 GGGTTCAAATCCCACAGCTGTC-AATTATT 1853296 Score = 84.2 bits (92), Expect = 2e-11 Identities = 73/90 (81%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 18790310 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 18790367 Query 126328 TTCGAACCCCACACCTGACAAATTATTATT 126357 ||| || |||||| ||| ||| || || || Sbjct 18790368 TTCAAATCCCACAGCTGTCAATTTGTTTTT 18790397 Score = 84.2 bits (92), Expect = 2e-11 Identities = 83/106 (78%), Gaps = 6/106 (6%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | Sbjct 21300964 AGTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTAAGAGG 21300907 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTT 126366 |||||||||| || ||||| |||||| || | ||| |||||| Sbjct 21300906 GCGTGGGTTCAAATCCCACTTCTGACATTTTTATTTTGTTATTTTT 21300861 >seq3 Length=23459830 Score = 131 bits (144), Expect = 2e-25 Identities = 310/462 (67%), Gaps = 10/462 (2%) Strand=Plus/Plus Query 93213 TACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGA 93272 ||||||| ||| || || || | || |||||||| ||| | ||| | | || Sbjct 9980547 TACCTTCGACGCAAGCGAAAGCGATGATTCGTTCGGCGAAAGTCTGAGAA---CCGTCGA 9980603 Query 93273 TCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAA 93332 ||||||| | |||||| | ||||| || | ||||| | |||||| || || || Sbjct 9980604 TCCATTTCATAGCCCATTGAGCTTTCTTGGCGACGCAAGGGATTGTTTCAATGGCACGAA 9980663 Query 93333 ATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTT 93392 | || | ||||| ||| | |||| || || ||||||| | ||| |||||| | Sbjct 9980664 AGAGATGATCTCTCTCTTTGTTATCTTTGATATAAGTATCGAGAAGGAGACTATACATCT 9980723 Query 93393 CAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCT 93452 | || |||| || || || || || ||||| ||||||||| | || || | || | Sbjct 9980724 CCGAGTGGATGTTTTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCAGAGACTT 9980783 Query 93453 GCACTTCTTGAGAA-AATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCa 93511 | || || || | || | ||||||| || || || || || ||||| || Sbjct 9980784 GAACATCG-GACATGAAGCGAGAAGCGAGATTCTCTAGTACGATTCCGTCAGATGCAGCG 9980842 Query 93512 aaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGC---TTATCCCAA 93568 || ||||| | | || || || || || ||| | || || || || ||||| Sbjct 9980843 AAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTCACCGTCGTTGAGACTGTTTTCCCAG 9980902 Query 93569 TCG-GATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTT 93627 ||| | | | |||| ||| ||||| ||||||||| | ||||| || |||||||| ||||| Sbjct 9980903 TCGCGGTTG-TCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAATGATGCTTCGGCTTT 9980961 Query 93628 TTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATAT 93669 ||||||||| ||||| || | | | || |||||||| || || Sbjct 9980962 TTTGTACATTTCCCAGATCTGTGGGTAGTGAATTGGGAACAT 9981003 Score = 109 bits (120), Expect = 6e-19 Identities = 208/301 (69%), Gaps = 4/301 (1%) Strand=Plus/Plus Query 92924 CTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGT 92983 ||||| || ||||| || || |||||| ||||||||||| ||||| || | | ||| Sbjct 9980170 CTATCCGCAACAAACTCAATATACTGACTCATCAAATCACGGTTCATCCCAACCA-ACGC 9980228 Query 92984 ACA-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTC 93042 || || || |||||| || || ||| |||||||| | || || || | |||| Sbjct 9980229 GCACGGAAGCGCGTCGCACACAAACTCTCTCTCGATTTCGACCGCGTCGCAGACGATTGA 9980288 Query 93043 TATTACTCTACTATTTGGTGGTTTTTGTACGACATAAT-TGTACATTAAGCACGCAAAGT 93101 | | || | | || | | ||||| || |||| | || || || || | Sbjct 9980289 TTTCACGCGT-TCTTCGCTAAGCTTTGTTTTGAGTAGCGTGTAGAGTAGACAAGCGAAAT 9980347 Query 93102 CGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACA 93161 | |||||||||||||| ||||| ||||| || || ||||||||| || || | | Sbjct 9980348 CACAGTGTAAACCTTCGTCACGTGAGATCAATTCGTTTGAGAATGTTAATCCAGGCATGA 9980407 Query 93162 GTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCA 93221 ||||||||||||| ||||| || |||||| ||| || || || || || |||||||| | Sbjct 9980408 GTCCTCGTTTCTTCAGCCAGAAGATTGAACAAAAGCTTCCGGAGAAGAAGATACCTTCAA 9980467 Query 93222 C 93222 | Sbjct 9980468 C 9980468 >seq4 Length=18585056 Score = 96.9 bits (106), Expect = 4e-15 Identities = 76/90 (84%), Gaps = 2/90 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 ||||| ||||||||||||||||||||||||| ||||| |||||| | || || | ||| Sbjct 6837643 GTCAGTATGGCCGAGTGGTCTAAGGCGCCAGACTTAAGTTCTGGTCCTCTTACGAGGGCG 6837584 Query 126324 TGGGTTCGAACCCCACACCTGACAAATTAT 126353 ||||||| |||||||| ||||||| |||| Sbjct 6837583 TGGGTTCAAACCCCACTGCTGACAATTTAT 6837554 Score = 91.5 bits (100), Expect = 2e-13 Identities = 76/92 (83%), Gaps = 6/92 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | Sbjct 6837858 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTAAGAGG 6837801 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTA 126352 |||||||||| |||||||| ||||||| ||| Sbjct 6837800 GCGTGGGTTCAAACCCCACTTCTGACAATTTA 6837769 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/98 (81%), Gaps = 7/98 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | Sbjct 12320109 AGTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTAAGAGG 12320166 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA-AATTATTATT 126357 |||||||||| || ||||| |||||| |||||||| Sbjct 12320167 GCGTGGGTTCAAATCCCACTTCTGACATTTTTATTATT 12320204 Score = 82.4 bits (90), Expect = 9e-11 Identities = 69/84 (82%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | ||| Sbjct 13076657 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGTAAGAGGGCG 13076598 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||| |||||||| |||||| Sbjct 13076597 TGGGTTCAAACCCCACTTCTGACA 13076574 >seq1 Length=30427671 Score = 84.2 bits (92), Expect = 2e-11 Identities = 73/90 (81%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 3881528 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 3881585 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||| || |||||| ||| ||| || || Sbjct 3881586 GGGTTCAAATCCCACAGCTGTCAATTTCTT 3881615 Score = 84.2 bits (92), Expect = 2e-11 Identities = 71/86 (83%), Gaps = 6/86 (7%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGAG 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | | Sbjct 6948943 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTAAGAGGG 6948886 Query 126322 CGTGGGTTCGAACCCCACACCTGACA 126347 ||||||||| |||||||| |||||| Sbjct 6948885 CGTGGGTTCAAACCCCACTTCTGACA 6948860 Score = 82.4 bits (90), Expect = 9e-11 Identities = 77/96 (80%), Gaps = 3/96 (3%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | || Sbjct 23802552 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAGGGC 23802611 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATTG 126358 |||||||| || ||||| ||||| | ||||| ||| Sbjct 23802612 GTGGGTTCAAATCCCACTTCTGAC-ATTTATTTTTG 23802646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556860751274680