Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq1 113 3e-20 seq4 98.7 7e-16 seq5 84.2 2e-11 >seq1 Length=30427671 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | ||||| || || ||||| ||||||||| |||| || | || Sbjct 24276822 ATGCAAATCTTTGTGAAAACTTTGACAGGCAAGACCATTACCTTGGAGGTTGAGAGCTCA 24276763 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | || || ||| ||||| || | | || | ||||| Sbjct 24276762 GACACAATTGATAATGTCAAAGCTAAGATTCAGGATAAGGAATGGATCCCACCAGACCAA 24276703 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||||| ||||||||||| ||||| || || ||| || ||| |||| |||||||| Sbjct 24276702 CAGAGACTCATCTTTGCTGGTAAACAGCTCGAGGATGGAAGGACTTTGGCTGATTACAAC 24276643 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || ||||| || ||||||||||| | ||||| ||| | || || || Sbjct 24276642 ATCCAGAAAGAGTCTACTCTTCACCTTGTATTGCGTCTTCGTGGTGG 24276596 Score = 82.4 bits (90), Expect = 5e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || || | || || || ||||| || ||||| || | ||| |||| | | Sbjct 20549989 ATGCAGATTTTCGTAAAGACTTTGACGGGAAAGACCATCACGCTTGAAGTGGAAAGCTCT 20550048 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | | || | ||| ||| ||| || ||||| || | | | ||||| Sbjct 20550049 GATACGATTGACAATGTGAAGGCAAAGATTCAGGACAAAGAAGGGATTTCACCAGACCAA 20550108 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||||| |||||||| ||||| || | |||||| ||| | || |||||||| Sbjct 20550109 CAGAGACTCATCTTTGCAGGCAAGCAGCATGAAGATGGTCGCACTTTAGCGGATTACAAC 20550168 Query 22014 ATTCAGAAGGAATCTACTCTTCA 22036 || ||||| || || |||||||| Sbjct 20550169 ATCCAGAAAGAGTCAACTCTTCA 20550191 >seq4 Length=18585056 Score = 98.7 bits (108), Expect = 7e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 || ||||||||| | || |||| |||||| | ||||| || || |||||||| ||| Sbjct 1279115 GACAAAGAGGGTATCCCACCGGACCAGCAGAGATTGATCTTCGCCGGAAAACAACTTGAA 1279056 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTA 22046 ||| | |||| |||| || ||||| ||||||||||| ||||| ||||| |||| || Sbjct 1279055 GATGGTAGAACTTTGGCTGACTACAACATTCAGAAGGAGTCTACACTTCACTTGGTGTTG 1278996 Query 22047 CGTTTACGAGGAGG 22060 ||| | || ||||| Sbjct 1278995 CGTCTCCGTGGAGG 1278982 Score = 98.7 bits (108), Expect = 7e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 || ||||||||| | ||| |||| |||||| | ||||| || || |||||||| ||| Sbjct 2719108 GACAAAGAGGGTATTCCTCCGGACCAGCAGAGATTGATCTTCGCCGGAAAACAACTTGAA 2719167 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTA 22046 ||| | |||| ||||||| ||||| ||||||||||| || || || || |||| || Sbjct 2719168 GATGGCAGAACTTTGGCCGACTACAACATTCAGAAGGAGTCCACACTCCACTTGGTCTTG 2719227 Query 22047 CGTTTACGAGGAGG 22060 ||| | || ||||| Sbjct 2719228 CGTCTGCGTGGAGG 2719241 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 || ||||||||| | || |||| |||||| | ||||| || || || ||||| ||| Sbjct 2719336 GACAAAGAGGGTATCCCACCGGACCAGCAGAGATTGATCTTCGCCGGAAAGCAACTTGAA 2719395 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTA 22046 ||| || |||| |||| || ||||| ||||||||||| || || ||||| |||| || Sbjct 2719396 GATGGAAGAACTTTGGCTGACTACAACATTCAGAAGGAGTCCACACTTCACTTGGTCTTG 2719455 Query 22047 CGTTTACGAGGAGG 22060 ||| | || ||||| Sbjct 2719456 CGTCTGCGTGGAGG 2719469 >seq5 Length=26975502 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 21949 ACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATT 22008 |||||||||||||||||||||| ||||||||||| |||||| || | || |||| Sbjct 14953173 ACCAACAGAGACTTATCTTTGCAGGCAAACAACTCGAAGATGGTCGGACGCTTGCTGATT 14953114 Query 22009 ACAATATTCAGAAGGAATCTACTCTTCAT 22037 |||| || |||||||| || || |||||| Sbjct 14953113 ACAACATCCAGAAGGAGTCAACACTTCAT 14953085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358124769447478