Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq4 102 7e-17 seq2 82.4 7e-11 >seq4 Length=18585056 Score = 102 bits (112), Expect = 7e-17 Identities = 190/275 (69%), Gaps = 8/275 (3%) Strand=Plus/Plus Query 20246 ACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAA 20305 || |||||||| || | || | ||||| || |||||||||||| || || || | | Sbjct 16511557 ACGTGAGCAAGAATGCATGTAAGAAGGGAGTATGAGGCAATGTTAAACGGTACGCCGAGA 16511616 Query 20306 CCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAAT 20365 ||||| || | || | |||||||| ||||| ||||| || || | || |||||||| Sbjct 16511617 CCCATATCGGCTGAACGCTGATACATTTGACATGAAAGTTCTCCATTTGCAACATAAAAC 16511676 Query 20366 TGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCA 20425 || |||| ||| || || ||||| ||||||| | | || | || ||||| || Sbjct 16511677 TGTGCAAACATGTGGCATGGAGGAAGTGCCATCAGCTTAAGATCAGAAGGATTCCAAGCT 16511736 Query 20426 CACATAATGATTCTTCTATCGTGCGGATTATTTTTTAT----TAAATCCACAATGTACGA 20481 |||| || || | || ||| | ||||| || || || | ||| || || || | Sbjct 16511737 GACATTATAATCCGTCGATCATCAGGATTGTTCTTGATCTTGTTAAT-TAC-ATCTA--A 16511792 Query 20482 CAATTGGTCAAACCCCTGGCCTGTATAGTCAGCAT 20516 | || ||||| || ||||| ||||| ||||||| Sbjct 16511793 GAGCTGATCAAATCCTTGGCCAGTATAATCAGCAT 16511827 >seq2 Length=19698289 Score = 82.4 bits (90), Expect = 7e-11 Identities = 129/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 20183 TGCGTTTTGTAGATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCA 20242 || |||||||| | || ||||| || | || ||||| || || || |||| || Sbjct 7082289 TGAGTTTTGTATACATGAGCATCCCCAAGAACATGGATAAAATCACCAGGAACAAGATCA 7082348 Query 20243 GTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCC 20302 |||||||| ||||| |||| | || || || ||||||||||| || || || Sbjct 7082349 CACACATGAGCCAGCATGCAAGTAAGAAGAGAGTAAGAAGCAATGTTAAACGGCACACCA 7082408 Query 20303 AAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAA 20362 | ||||| ||| | || | |||||||| ||||| || || || || || || |||||| Sbjct 7082409 AGGCCCATATCTGCTGAACGCTGATACATTTGACATGAGAGTTCCCCTTCTGCCACATAA 7082468 Query 20363 AATTG 20367 || || Sbjct 7082469 AACTG 7082473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441372761379880