Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq1 93.3 3e-14 seq4 86.0 5e-12 seq2 86.0 5e-12 >seq1 Length=30427671 Score = 93.3 bits (102), Expect = 3e-14 Identities = 163/235 (69%), Gaps = 8/235 (3%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||||||||| || || |||| ||||||||| ||| ||||| ||||||||||| || Sbjct 8315167 ACCTCCTCTCAGACGTAGAACCAAATGAAGCGTCGACTCTTTCTGGATGTTGTAATCAGC 8315108 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | | || | || |||||||| || ||||| || |||| || ||||||||| || Sbjct 8315107 TAGTGTTCTTCCATCTTCCAATTGTTTTCCGGCGAAGATCAACCGTTGCTGATCCGGTGG 8315048 Query 34020 CACGCTCTCTTTGTCCATAATTTT---TTGCTTAATGGAACTC-ACACTATCAGTAGATT 34075 | | || ||||| || || || | | || || | | || | |||| Sbjct 8315047 GATTCCTTCCTTGTCTTGGATCTTCGCTTTCACATTG----TCGATTGTGTCTGATGATT 8314992 Query 34076 CGCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTT 34130 | || | |||||||| || || ||||| |||||||| ||||| |||||||| Sbjct 8314991 CTACCTCTAAGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATTTT 8314937 Score = 82.4 bits (90), Expect = 6e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| ||||| || || ||||||| ||| || ||| |||||| || ||||||||||| || Sbjct 24277048 ACCACCTCTGAGACGAAGCACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCAGC 24277107 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 | | || |||| || | ||||| |||||||| || || | |||||||||| Sbjct 24277108 GAGTGTGCGACCGTCTTCAAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGATCC 24277162 >seq4 Length=18585056 Score = 86.0 bits (94), Expect = 5e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| | ||| |||| |||| ||||||||| ||||||||| ||||||||||| || Sbjct 2588505 ACCTCCACGCAGACGCAAGACCAAATGAAGCGTAGACTCCTTCTGGATGTTGTAATCCGC 2588564 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 ||| || |||| || | |||||| ||||| || |||| | |||||| ||| Sbjct 2588565 CAAAGTTCTGCCGTCCTCAAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCC 2588619 Score = 86.0 bits (94), Expect = 5e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| | ||| |||| ||||| ||||| || ||||||||| ||||||||||| || Sbjct 2719698 ACCTCCACGCAGACGCAACACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGC 2719639 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 ||| || | || |||||||| || |||||||| |||| | |||||| ||| Sbjct 2719638 CAAAGTACGACCATCCTCCAATTGTTTTCCGGCAAAGATCAACCTCTGCTGGTCC 2719584 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| | ||| |||| |||| ||||| ||| |||||||||||||||||| || || Sbjct 2719470 ACCTCCACGCAGACGCAAGACCAAGTGAAGTGTGGACTCCTTCTGAATGTTGTAGTCAGC 2719411 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 ||| || | || || | |||||| ||||| || |||| | |||||| ||| || Sbjct 2719410 CAAAGTTCTTCCATCTTCAAGTTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGTGG 2719351 Query 34020 CACGCTCTCTTTGTCC 34035 | | |||||||||| Sbjct 2719350 GATACCCTCTTTGTCC 2719335 >seq2 Length=19698289 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || ||||| |||| || || |||||||| || ||| ||||| ||||||||||| || Sbjct 14981525 CCACCTCTGAGCCTGAGGACAAGATGAAGAGTAGACTCTTTCTGGATGTTGTAATCAGCT 14981466 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || || | || ||||||||||| || ||||| ||||| | ||| ||||| || Sbjct 14981465 AAGGTCCGGCCATCTTCCAATTGCTTACCAGCAAAAATCAGCCTCTGTTGATCAGGTGGT 14981406 Query 34021 ACGCTCTCTTTGTCC 34035 | || |||||||||| Sbjct 14981405 ATGCCCTCTTTGTCC 14981391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397062366125614