Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq3 98.7 2e-15 seq4 87.8 4e-12 >seq3 Length=23459830 Score = 98.7 bits (108), Expect = 2e-15 Identities = 173/251 (69%), Gaps = 1/251 (0%) Strand=Plus/Minus Query 243489 AACG-GTCAAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACG 243547 |||| || ||| |||| || || || || |||| ||| | || || | ||||||| Sbjct 9980299 AACGCGTGAAATCAATCGTCTGCGACGCGGTCGAAATCGAGAGAGAGTTTGTGTGCGACG 9980240 Query 243548 CTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCG 243607 | |||| ||| | | |||| |||||| ||| | ||| | ||||| || || || | Sbjct 9980239 CGCTTCCGTGCGCGTTGGTTGGGATGAACCGTGATTTGATGAGTCAGTATATTGAGTTTG 9980180 Query 243608 TAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCT 243667 | || || | |||| |||||||| || | ||| |||||| | || || | Sbjct 9980179 TTGCGGATAGGCTTTTGGGTGCGCTTGGGTACGGGAAGGTGTACGGTGTTACTAATCCGT 9980120 Query 243668 TTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCA 243727 | | | ||||| || ||||| |||||||||||||| || |||||||| || ||||| Sbjct 9980119 TCGATTGGATGGAACTTATTTCACTTCAAGGGAAAACGAATTTCTTCGAGAAACGTGTTG 9980060 Query 243728 GTGATTATCAA 243738 ||||||| ||| Sbjct 9980059 GTGATTACCAA 9980049 >seq4 Length=18585056 Score = 87.8 bits (96), Expect = 4e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 30983 TCCTTGCGAATTGCTTCTTCTTCCTCGGGTGTGATCTCGTTTTCGATACCGAACACTTTT 31042 ||||| |||| |||||||||||||| ||||| | || || || || ||| | Sbjct 16379439 TCCTTACGAACAGCTTCTTCTTCCTCAGGTGTAAAATCATTCTCAATGTTGAAAGTTGAA 16379380 Query 31043 CGAATCTCTTCCGGAGtttttccttttattttttCAGCGATAGCTTGACATAGAACATCA 31102 |||||||| || ||||| || ||||| || | || || | || ||| ||| | |||| Sbjct 16379379 CGAATCTCCTCTGGAGTCTTGCCTTTGATCATGTCCGCAACAGTTTGGCATGTGAGATCA 16379320 Query 31103 AGCATACTCTTTATGTTCAAGAAATTCGCTCCTTGAATCAGTTCGAAGATG 31153 |||| || |||||||| | | ||||||| | | || ||||| |||||| Sbjct 16379319 AGCAAGCTTTTTATGTTGAGGTAATTCGCAGCAAGGATGAGTTCAAAGATG 16379269 Score = 84.2 bits (92), Expect = 5e-11 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 30983 TCCTTGCGAATTGCTTCTTCTTCCTCGGGTGTGATCTCGTTTTCGATACCGAACACTTTT 31042 ||||| |||| |||||||||||||| ||||| | || || || || ||| | Sbjct 16480044 TCCTTACGAACAGCTTCTTCTTCCTCAGGTGTAAAATCATTCTCAATGTTGAAAGTTGAA 16480103 Query 31043 CGAATCTCTTCCGGAGtttttccttttattttttCAGCGATAGCTTGACATAGAACATCA 31102 |||||||| || ||||| || ||||| || | || || | || ||| ||| | |||| Sbjct 16480104 CGAATCTCCTCTGGAGTCTTGCCTTTGATCATGTCCGCAACAGTTTGGCATGTGAGATCA 16480163 Query 31103 AGCATACTCTTTATGTTCAAGAAATTCGCTCCTTGAATCAGTTCGAAGATG 31153 | || || |||||||| | | ||||||| | | || ||||| |||||| Sbjct 16480164 AACAAGCTTTTTATGTTGAGGTAATTCGCAGCAAGGATGAGTTCAAAGATG 16480214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102879901085450