Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11]
7 sequences; 119,667,750 total letters
Query= NC_009899.1
Length=344691
Score E
Sequences producing significant alignments: (Bits) Value
seq3 98.7 2e-15
seq4 87.8 4e-12
>seq3
Length=23459830
Score = 98.7 bits (108), Expect = 2e-15
Identities = 173/251 (69%), Gaps = 1/251 (0%)
Strand=Plus/Minus
Query 243489 AACG-GTCAAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACG 243547
|||| || ||| |||| || || || || |||| ||| | || || | |||||||
Sbjct 9980299 AACGCGTGAAATCAATCGTCTGCGACGCGGTCGAAATCGAGAGAGAGTTTGTGTGCGACG 9980240
Query 243548 CTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCG 243607
| |||| ||| | | |||| |||||| ||| | ||| | ||||| || || || |
Sbjct 9980239 CGCTTCCGTGCGCGTTGGTTGGGATGAACCGTGATTTGATGAGTCAGTATATTGAGTTTG 9980180
Query 243608 TAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCT 243667
| || || | |||| |||||||| || | ||| |||||| | || || |
Sbjct 9980179 TTGCGGATAGGCTTTTGGGTGCGCTTGGGTACGGGAAGGTGTACGGTGTTACTAATCCGT 9980120
Query 243668 TTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCA 243727
| | | ||||| || ||||| |||||||||||||| || |||||||| || |||||
Sbjct 9980119 TCGATTGGATGGAACTTATTTCACTTCAAGGGAAAACGAATTTCTTCGAGAAACGTGTTG 9980060
Query 243728 GTGATTATCAA 243738
||||||| |||
Sbjct 9980059 GTGATTACCAA 9980049
>seq4
Length=18585056
Score = 87.8 bits (96), Expect = 4e-12
Identities = 122/171 (71%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 30983 TCCTTGCGAATTGCTTCTTCTTCCTCGGGTGTGATCTCGTTTTCGATACCGAACACTTTT 31042
||||| |||| |||||||||||||| ||||| | || || || || ||| |
Sbjct 16379439 TCCTTACGAACAGCTTCTTCTTCCTCAGGTGTAAAATCATTCTCAATGTTGAAAGTTGAA 16379380
Query 31043 CGAATCTCTTCCGGAGtttttccttttattttttCAGCGATAGCTTGACATAGAACATCA 31102
|||||||| || ||||| || ||||| || | || || | || ||| ||| | ||||
Sbjct 16379379 CGAATCTCCTCTGGAGTCTTGCCTTTGATCATGTCCGCAACAGTTTGGCATGTGAGATCA 16379320
Query 31103 AGCATACTCTTTATGTTCAAGAAATTCGCTCCTTGAATCAGTTCGAAGATG 31153
|||| || |||||||| | | ||||||| | | || ||||| ||||||
Sbjct 16379319 AGCAAGCTTTTTATGTTGAGGTAATTCGCAGCAAGGATGAGTTCAAAGATG 16379269
Score = 84.2 bits (92), Expect = 5e-11
Identities = 121/171 (71%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 30983 TCCTTGCGAATTGCTTCTTCTTCCTCGGGTGTGATCTCGTTTTCGATACCGAACACTTTT 31042
||||| |||| |||||||||||||| ||||| | || || || || ||| |
Sbjct 16480044 TCCTTACGAACAGCTTCTTCTTCCTCAGGTGTAAAATCATTCTCAATGTTGAAAGTTGAA 16480103
Query 31043 CGAATCTCTTCCGGAGtttttccttttattttttCAGCGATAGCTTGACATAGAACATCA 31102
|||||||| || ||||| || ||||| || | || || | || ||| ||| | ||||
Sbjct 16480104 CGAATCTCCTCTGGAGTCTTGCCTTTGATCATGTCCGCAACAGTTTGGCATGTGAGATCA 16480163
Query 31103 AGCATACTCTTTATGTTCAAGAAATTCGCTCCTTGAATCAGTTCGAAGATG 31153
| || || |||||||| | | ||||||| | | || ||||| ||||||
Sbjct 16480164 AACAAGCTTTTTATGTTGAGGTAATTCGCAGCAAGGATGAGTTCAAAGATG 16480214
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1102879901085450
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |