Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq5 91.5 2e-13 seq3 86.0 7e-12 seq1 86.0 7e-12 >seq5 Length=26975502 Score = 91.5 bits (100), Expect = 2e-13 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 ||| ||||| ||||| | || || | ||| || || || ||||| ||||| | ||| Sbjct 16408781 GTGAAGACCTTCGTCTCTCGAAATCAATTCGTTTGAAAAAGTGAGTCCAGGCATTAAACC 16408722 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 || |||||||||||||| |||| |||||| ||| |||||||| || || || || || Sbjct 16408721 TCGTTTCTTCAACCAGAATATCGAACAAAAGCTACCGGAGAAGAATATACCTTCAACGCA 16408662 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAG 126205 || ||||| | || | |||||| ||| Sbjct 16408661 AGCAAACGCTACGATTCTCTCAGCGAAG 16408634 >seq3 Length=23459830 Score = 86.0 bits (94), Expect = 7e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 ||| | ||| |||||||| ||||| | ||| || ||||| | ||| |||||||| || Sbjct 9980352 GTGTAAACCTTCGTCACGTGAGATCAATTCGTTTGAGAATGTTAATCCAGGCATGAGTCC 9980411 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 || ||||||| |||||| || | |||||| || ||||||||||| || || ||||| Sbjct 9980412 TCGTTTCTTCAGCCAGAAGATTGAACAAAAGCTTCCGGAGAAGAAGATACCTTCAACACA 9980471 >seq1 Length=30427671 Score = 86.0 bits (94), Expect = 7e-12 Identities = 189/279 (68%), Gaps = 6/279 (2%) Strand=Plus/Plus Query 10876 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGG 10935 ||| ||||||||||| ||||| || ||||| || || ||||| | |||||||| | Sbjct 18615746 AAATCCATCCATCTCTGTCAACAGCTGATTAATAGTCTGTTCTCTCTCATCATTTCC--T 18615803 Query 10936 CATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 10993 | | ||| || || | | ||| |||| || |||||||| ||||| ||||| || ||| Sbjct 18615804 CCTCCCATCCCAGCTCCTCTCTGCCTACCCACAGCGTCAATCTCATCAATGAATACAATA 18615863 Query 10994 CACGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACC 11052 || || | ||| || || || || | ||| | |||||| ||||| ||||| Sbjct 18615864 CAAGG-GGCTTTAGACTTAGCCTTCTCGAACAAATCCCTAACTCTCGATGCACCCACACC 18615922 Query 11053 CACAAACATTTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACC 11112 |||||| | || || || | | ||| | || || ||| || || | ||| || Sbjct 18615923 CACAAAAAGCTCTACGAACTCCGAGGCCGCGCAAGAGAAGAACGGCACTCCAGCTTCCCC 18615982 Query 11113 CGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGG 11151 || | || | || ||||| ||||| ||||| ||||| Sbjct 18615983 AGCCACCGCCCTAGCCAGGAGTGTCTTACCCGTACCAGG 18616021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597353547731560