Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11]
7 sequences; 119,667,750 total letters
Query= NC_011423.1
Length=111724
Score E
Sequences producing significant alignments: (Bits) Value
seq1 116 3e-21
seq5 98.7 7e-16
seq3 91.5 1e-13
seq4 82.4 5e-11
>seq1
Length=30427671
Score = 116 bits (128), Expect = 3e-21
Identities = 166/231 (72%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCT 15008
|| |||| || | || ||| |||||||| || || ||||| || ||||||||||| |||
Sbjct 8315166 CCTCCTCTCAGACGTAGAACCAAATGAAGCGTCGACTCTTTCTGGATGTTGTAATCAGCT 8315107
Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068
|| |||| | ||||| |||||||| || ||| | ||||| || || || || |||
Sbjct 8315106 -AGTGTTCTTCCATCTTCCAATTGTTTTCCGGCGAAGATCAACCGTTGCTGATCCGGTGG 8315048
Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128
|||||||||||||| || || ||| ||| | || || || || ||||||
Sbjct 8315047 GATTCCTTCCTTGTCTTGGATCTTCGCTTTCACATTGTCGATTGTGTCTGATGATTCTAC 8314988
Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179
|||||||| || || || || || || ||||| || || || ||||| ||
Sbjct 8314987 CTCTAAGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATTTT 8314937
Score = 98.7 bits (108), Expect = 7e-16
Identities = 144/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033
||||| ||||| ||||| || ||||||||||| | | | || | || || | |||
Sbjct 24276620 TGAAGAGTAGACTCTTTCTGGATGTTGTAATCAGCCAAAGTCCTTCCATCCTCGAGCTGT 24276679
Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093
|| ||||| | || | | ||||||||| ||| || | |||||| || ||| ||
Sbjct 24276680 TTACCAGCAAAGATGAGTCTCTGTTGGTCTGGTGGGATCCATTCCTTATCCTGAATCTTA 24276739
Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153
||| ||| | || || || || | || || || ||||||||||| || ||||||
Sbjct 24276740 GCTTTGACATTATCAATTGTGTCTGAGCTCTCAACCTCCAAGGTAATGGTCTTGCCTGTC 24276799
Query 15154 AGAGTTTTTACAAAAATTTGCATA 15177
| |||||| ||||| |||||||||
Sbjct 24276800 AAAGTTTTCACAAAGATTTGCATA 24276823
Score = 96.9 bits (106), Expect = 2e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||| || | ||| | || | ||||| || || || ||||| |||||||||||
Sbjct 20549531 CCACCACGGAGTCTCAGCACAAGGTGAAGTGTTGACTCCTTTTGGATGTTGTAATCTGCA 20549472
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
||| | | | || || | ||||| || ||| |||| | | |||||| || ||
Sbjct 20549471 AGAGTGCGACCATCCTCAAGCTGTTTACCCGCGAATATTAGTCTCTGTTGATCCGGAGGG 20549412
Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129
|||||||||||||| || || ||| ||| | || ||||| || || | || ||
Sbjct 20549411 ATTCCTTCCTTGTCTTGGATCTTAGCTTTAACATTGTCAATAGTGTCTGTACTCTCAACT 20549352
Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
|||| ||||||||||| ||| || || || || || || || ||||||
Sbjct 20549351 TCTAGGGTAATGGTTTAACCGGTAAGGGTCTTGACGAATATCTGCATA 20549304
Score = 95.1 bits (104), Expect = 9e-15
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027
|| ||||| ||||| || || ||||| ||||||||||| ||| | | |||||||
Sbjct 24277067 ACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCAGCGAGTGTGCGACCGTCTTCA 24277126
Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087
| || || || || | || | | ||| || || || ||||||||||| ||
Sbjct 24277127 AGCTGCTTACCGGCAAAGATAAGCCTCTGCTGATCCGGAGGGATTCCTTCCTTATCCTGG 24277186
Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147
|| || || ||| | || |||||||| | |||| || || || || ||||||||
Sbjct 24277187 ATCTTAGCCTTAACATTGTCAATAGTATCAGAACTTTCAACCTCCAAAGTGATGGTTTTG 24277246
Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
||||||| ||| || |||||||| ||||||
Sbjct 24277247 CCTGTCAAAGTCTTGACAAAAATCTGCATA 24277276
>seq5
Length=26975502
Score = 98.7 bits (108), Expect = 7e-16
Identities = 150/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027
|| ||||||||||| || || ||||| |||||||| || ||| |||| |||||||
Sbjct 772460 ACCAAATGAAGGGTCGACTCCTTTTGAATGTTGTAGTCAGCAAGAGTTCTTCCGTCTTCA 772519
Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087
| || || || || | || | | ||| || || || ||||||||||||||
Sbjct 772520 AGCTGCTTACCGGCAAAGATAAGTCTCTGCTGATCCGGAGGGATTCCTTCCTTGTCCTGG 772579
Query 15088 AT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146
|| ||||| ||| || | || ||||| || | || || || || |||||||| ||
Sbjct 772580 ATCTTTGC-TTTGACGTTGTCAATAGTGTCAGAGCTCTCAACCTCCAAAGTAATGGTCTT 772638
Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
|| |||||||| || ||||| |||||||||
Sbjct 772639 GCCAGTCAGAGTCTTGACAAAGATTTGCATA 772669
Score = 96.9 bits (106), Expect = 2e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||||| ||| || | ||| || || || || || ||||| || |||||||||||
Sbjct 14953290 CCACCTCTCAACCTGAGAACCAAGTGGAGAGTTGATTCTTTCTGGATGTTGTAATCTGCA 14953349
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
||| | | | || || | ||||| ||||| | || | | |||||| || ||
Sbjct 14953350 AGAGTGCGACCATCGTCAAGCTGTTTACCAGCAAAGATTAGTCTCTGTTGATCCGGAGGG 14953409
Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129
| |||||||||||| || || ||| ||| | || ||||| || | | || ||
Sbjct 14953410 ACTCCTTCCTTGTCTTGGATCTTAGCTTTAACATTGTCAATAGTGTCTGAACTCTCAACT 14953469
Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
|| | ||||||||||||||| || || || || ||||| || ||||||
Sbjct 14953470 TCAAGGGTAATGGTTTTACCGGTAAGCGTCTTGACAAATATCTGCATA 14953517
Score = 93.3 bits (102), Expect = 3e-14
Identities = 145/205 (71%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033
||||| ||||| || ||||| || ||||| || ||| | || | ||||| | ||
Sbjct 6974033 TGAAGAGTAGACTCCTTTTGGATATTGTAGTCAGCAAGAGTCCTTCCATCTTCAAGCTGC 6974092
Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAAT-TTT 15092
|| |||||| | || | | || ||||| || |||||||||||||| || |||
Sbjct 6974093 TTACCAGCGAAAATAAGTCTTTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGGATCTTT 6974152
Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152
|| || || | || ||||| || |||| || || |||||||||||||| || ||
Sbjct 6974153 GCCTTG-ACGTTGTCAATAGTGTCAGAGCTTTCAACCTCCAAGGTAATGGTTTTGCCAGT 6974211
Query 15153 CAGAGTTTTTACAAAAATTTGCATA 15177
|||||| || ||||| || ||||||
Sbjct 6974212 CAGAGTCTTGACAAAGATCTGCATA 6974236
Score = 89.7 bits (98), Expect = 4e-13
Identities = 166/240 (69%), Gaps = 4/240 (2%)
Strand=Plus/Plus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||||| || | | ||| ||||||||||| || ||||| || ||||||||||||
Sbjct 772670 CCACCTCTTAAACGGAGAACCAAATGAAGGGTTGATTCTTTCTGAATGTTGTAATCGGCC 772729
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
| | | | ||||||| ||||| || ||| |||| || | || || || |||
Sbjct 772730 AAGGTACGGCCATCTTCTAGCTGTTTACCGGCGAATATTAATCTTTGCTGATCCGGAGGA 772789
Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128
|| ||||||||||| ||| ||||| || ||| | || || || || | || ||
Sbjct 772790 ATGCCTTCCTTGTCCTGAATCTTTGC-CTTAACATTGTCGATGGTGTCAGAGCTCTCAAC 772848
Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAATAAA 15188
|| | || || || || || || || ||||| || || |||||| || |||||||||
Sbjct 772849 CTCGAGAGTGATAGTCTTGCCAGTGAGTGTTTTCACGAAGATTTGC--ATCTGAAATAAA 772906
Score = 87.8 bits (96), Expect = 1e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||||| || | | || ||||||||||| || |||||||| |||||||||||
Sbjct 6973781 CCACCTCTCAGACGAAGCACCAAATGAAGGGTTGACTCTTTTTGGATGTTGTAATCAGCA 6973840
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
||| | | | || |||| || || || || | || | | ||| ||||| |||
Sbjct 6973841 AGAGTGCGACCATCCTCTAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGGTCCGGTGGG 6973900
Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129
||||| || || || || || ||| ||| | || || || || | || ||
Sbjct 6973901 ATTCCCTCTTTATCTTGGATCTTAGCTTTGACATTGTCAATGGTGTCTGAGCTCTCAACC 6973960
Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
|| | ||| || |||||||| |||||||| || ||||| |||||||||
Sbjct 6973961 TCAAGGGTGATTGTTTTACCCGTCAGAGTCTTCACAAAGATTTGCATA 6974008
Score = 87.8 bits (96), Expect = 1e-12
Identities = 160/229 (70%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCT 15008
||||||| || || | ||| || || || || || ||||| || ||||||||||| ||
Sbjct 6974237 CCACCTCTTAACCTGAGAACCAAGTGGAGTGTTGATTCTTTCTGGATGTTGTAATCAGCC 6974296
Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068
|| | | | ||||||| || || |||||| | ||||| | || ||||| ||
Sbjct 6974297 AAGG-TGCGGCCATCTTCTAGCTGCTTACCAGCGAAGATCAATCTTTGCTGGTCAGGAGG 6974355
Query 15069 AATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127
||| ||||||||||| || ||||| || ||| | || || || || | || |
Sbjct 6974356 AATGCCTTCCTTGTCCTGGATCTTTGC-CTTAACATTGTCGATGGTGTCAGAGCTCTCAA 6974414
Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
| || | || ||||| ||||| || || ||||| || |||||||||||
Sbjct 6974415 CCTCGAGAGTGATGGTCTTACCAGTGAGTGTTTTCACGAAAATTTGCAT 6974463
>seq3
Length=23459830
Score = 91.5 bits (100), Expect = 1e-13
Identities = 145/208 (70%), Gaps = 0/208 (0%)
Strand=Plus/Minus
Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032
|||||| || || || || || |||||||| ||| ||| | | ||||||| | ||
Sbjct 23037341 ATGAAGCGTCGATTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCTTCAAGCTG 23037282
Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092
||| || ||| | ||||| ||||| ||||| ||| |||||||||||||| || ||
Sbjct 23037281 TTTCCCGGCGAAAATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGGATCTT 23037222
Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152
|| ||| | || || || ||| ||| || || | ||| ||||| || || ||
Sbjct 23037221 CGCCTTCACATTGTCGATGGTGTCGGATGATTCAACCTCAAGGGTTATGGTCTTCCCCGT 23037162
Query 15153 CAGAGTTTTTACAAAAATTTGCATATTT 15180
|| ||||| || || || ||||| |||
Sbjct 23037161 TAGGGTTTTCACGAAGATCTGCATCTTT 23037134
>seq4
Length=18585056
Score = 82.4 bits (90), Expect = 5e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||| || | |||| || || ||||||||||| || || || |||||||| |||
Sbjct 1278754 CCACCACGGAGCCTTAGCACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCC 1278813
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
| | | | | || || | ||||| |||||| | || | |||||| ||||| ||
Sbjct 1278814 AAAGTACGACCATCCTCAAGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGG 1278873
Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129
|| ||||||||||| || || || || | || || || ||| | || ||
Sbjct 1278874 ATACCTTCCTTGTCCTGGATCTTAGCCTTCACGTTGTCAATGGTGTCGGAGCTCTCAACT 1278933
Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
|| | |||||||| || || || ||||| || || ||||| ||||||
Sbjct 1278934 TCAAGAGTAATGGTCTTTCCAGTGAGAGTCTTCACGAAAATCTGCATA 1278981
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 357391969509995
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