Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq1 116 3e-21 seq5 98.7 7e-16 seq3 91.5 1e-13 seq4 82.4 5e-11 >seq1 Length=30427671 Score = 116 bits (128), Expect = 3e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCT 15008 || |||| || | || ||| |||||||| || || ||||| || ||||||||||| ||| Sbjct 8315166 CCTCCTCTCAGACGTAGAACCAAATGAAGCGTCGACTCTTTCTGGATGTTGTAATCAGCT 8315107 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 || |||| | ||||| |||||||| || ||| | ||||| || || || || ||| Sbjct 8315106 -AGTGTTCTTCCATCTTCCAATTGTTTTCCGGCGAAGATCAACCGTTGCTGATCCGGTGG 8315048 Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 |||||||||||||| || || ||| ||| | || || || || |||||| Sbjct 8315047 GATTCCTTCCTTGTCTTGGATCTTCGCTTTCACATTGTCGATTGTGTCTGATGATTCTAC 8314988 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 |||||||| || || || || || || ||||| || || || ||||| || Sbjct 8314987 CTCTAAGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATTTT 8314937 Score = 98.7 bits (108), Expect = 7e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||| ||||| ||||| || ||||||||||| | | | || | || || | ||| Sbjct 24276620 TGAAGAGTAGACTCTTTCTGGATGTTGTAATCAGCCAAAGTCCTTCCATCCTCGAGCTGT 24276679 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || ||||| | || | | ||||||||| ||| || | |||||| || ||| || Sbjct 24276680 TTACCAGCAAAGATGAGTCTCTGTTGGTCTGGTGGGATCCATTCCTTATCCTGAATCTTA 24276739 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 ||| ||| | || || || || | || || || ||||||||||| || |||||| Sbjct 24276740 GCTTTGACATTATCAATTGTGTCTGAGCTCTCAACCTCCAAGGTAATGGTCTTGCCTGTC 24276799 Query 15154 AGAGTTTTTACAAAAATTTGCATA 15177 | |||||| ||||| ||||||||| Sbjct 24276800 AAAGTTTTCACAAAGATTTGCATA 24276823 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | ||| | || | ||||| || || || ||||| ||||||||||| Sbjct 20549531 CCACCACGGAGTCTCAGCACAAGGTGAAGTGTTGACTCCTTTTGGATGTTGTAATCTGCA 20549472 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | | || || | ||||| || ||| |||| | | |||||| || || Sbjct 20549471 AGAGTGCGACCATCCTCAAGCTGTTTACCCGCGAATATTAGTCTCTGTTGATCCGGAGGG 20549412 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||||||||| || || ||| ||| | || ||||| || || | || || Sbjct 20549411 ATTCCTTCCTTGTCTTGGATCTTAGCTTTAACATTGTCAATAGTGTCTGTACTCTCAACT 20549352 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 |||| ||||||||||| ||| || || || || || || || |||||| Sbjct 20549351 TCTAGGGTAATGGTTTAACCGGTAAGGGTCTTGACGAATATCTGCATA 20549304 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || ||||| ||||| || || ||||| ||||||||||| ||| | | ||||||| Sbjct 24277067 ACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCAGCGAGTGTGCGACCGTCTTCA 24277126 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || || || || | || | | ||| || || || ||||||||||| || Sbjct 24277127 AGCTGCTTACCGGCAAAGATAAGCCTCTGCTGATCCGGAGGGATTCCTTCCTTATCCTGG 24277186 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || || || ||| | || |||||||| | |||| || || || || |||||||| Sbjct 24277187 ATCTTAGCCTTAACATTGTCAATAGTATCAGAACTTTCAACCTCCAAAGTGATGGTTTTG 24277246 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||||| ||| || |||||||| |||||| Sbjct 24277247 CCTGTCAAAGTCTTGACAAAAATCTGCATA 24277276 >seq5 Length=26975502 Score = 98.7 bits (108), Expect = 7e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || ||||||||||| || || ||||| |||||||| || ||| |||| ||||||| Sbjct 772460 ACCAAATGAAGGGTCGACTCCTTTTGAATGTTGTAGTCAGCAAGAGTTCTTCCGTCTTCA 772519 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || || || || | || | | ||| || || || |||||||||||||| Sbjct 772520 AGCTGCTTACCGGCAAAGATAAGTCTCTGCTGATCCGGAGGGATTCCTTCCTTGTCCTGG 772579 Query 15088 AT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || ||||| ||| || | || ||||| || | || || || || |||||||| || Sbjct 772580 ATCTTTGC-TTTGACGTTGTCAATAGTGTCAGAGCTCTCAACCTCCAAAGTAATGGTCTT 772638 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || |||||||| || ||||| ||||||||| Sbjct 772639 GCCAGTCAGAGTCTTGACAAAGATTTGCATA 772669 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| ||| || | ||| || || || || || ||||| || ||||||||||| Sbjct 14953290 CCACCTCTCAACCTGAGAACCAAGTGGAGAGTTGATTCTTTCTGGATGTTGTAATCTGCA 14953349 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | | || || | ||||| ||||| | || | | |||||| || || Sbjct 14953350 AGAGTGCGACCATCGTCAAGCTGTTTACCAGCAAAGATTAGTCTCTGTTGATCCGGAGGG 14953409 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 | |||||||||||| || || ||| ||| | || ||||| || | | || || Sbjct 14953410 ACTCCTTCCTTGTCTTGGATCTTAGCTTTAACATTGTCAATAGTGTCTGAACTCTCAACT 14953469 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | ||||||||||||||| || || || || ||||| || |||||| Sbjct 14953470 TCAAGGGTAATGGTTTTACCGGTAAGCGTCTTGACAAATATCTGCATA 14953517 Score = 93.3 bits (102), Expect = 3e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||| ||||| || ||||| || ||||| || ||| | || | ||||| | || Sbjct 6974033 TGAAGAGTAGACTCCTTTTGGATATTGTAGTCAGCAAGAGTCCTTCCATCTTCAAGCTGC 6974092 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAAT-TTT 15092 || |||||| | || | | || ||||| || |||||||||||||| || ||| Sbjct 6974093 TTACCAGCGAAAATAAGTCTTTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGGATCTTT 6974152 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 || || || | || ||||| || |||| || || |||||||||||||| || || Sbjct 6974153 GCCTTG-ACGTTGTCAATAGTGTCAGAGCTTTCAACCTCCAAGGTAATGGTTTTGCCAGT 6974211 Query 15153 CAGAGTTTTTACAAAAATTTGCATA 15177 |||||| || ||||| || |||||| Sbjct 6974212 CAGAGTCTTGACAAAGATCTGCATA 6974236 Score = 89.7 bits (98), Expect = 4e-13 Identities = 166/240 (69%), Gaps = 4/240 (2%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| || | | ||| ||||||||||| || ||||| || |||||||||||| Sbjct 772670 CCACCTCTTAAACGGAGAACCAAATGAAGGGTTGATTCTTTCTGAATGTTGTAATCGGCC 772729 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | ||||||| ||||| || ||| |||| || | || || || ||| Sbjct 772730 AAGGTACGGCCATCTTCTAGCTGTTTACCGGCGAATATTAATCTTTGCTGATCCGGAGGA 772789 Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 || ||||||||||| ||| ||||| || ||| | || || || || | || || Sbjct 772790 ATGCCTTCCTTGTCCTGAATCTTTGC-CTTAACATTGTCGATGGTGTCAGAGCTCTCAAC 772848 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAATAAA 15188 || | || || || || || || || ||||| || || |||||| || ||||||||| Sbjct 772849 CTCGAGAGTGATAGTCTTGCCAGTGAGTGTTTTCACGAAGATTTGC--ATCTGAAATAAA 772906 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| || | | || ||||||||||| || |||||||| ||||||||||| Sbjct 6973781 CCACCTCTCAGACGAAGCACCAAATGAAGGGTTGACTCTTTTTGGATGTTGTAATCAGCA 6973840 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | | || |||| || || || || | || | | ||| ||||| ||| Sbjct 6973841 AGAGTGCGACCATCCTCTAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGGTCCGGTGGG 6973900 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||| || || || || || ||| ||| | || || || || | || || Sbjct 6973901 ATTCCCTCTTTATCTTGGATCTTAGCTTTGACATTGTCAATGGTGTCTGAGCTCTCAACC 6973960 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | ||| || |||||||| |||||||| || ||||| ||||||||| Sbjct 6973961 TCAAGGGTGATTGTTTTACCCGTCAGAGTCTTCACAAAGATTTGCATA 6974008 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCT 15008 ||||||| || || | ||| || || || || || ||||| || ||||||||||| || Sbjct 6974237 CCACCTCTTAACCTGAGAACCAAGTGGAGTGTTGATTCTTTCTGGATGTTGTAATCAGCC 6974296 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 || | | | ||||||| || || |||||| | ||||| | || ||||| || Sbjct 6974297 AAGG-TGCGGCCATCTTCTAGCTGCTTACCAGCGAAGATCAATCTTTGCTGGTCAGGAGG 6974355 Query 15069 AATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 ||| ||||||||||| || ||||| || ||| | || || || || | || | Sbjct 6974356 AATGCCTTCCTTGTCCTGGATCTTTGC-CTTAACATTGTCGATGGTGTCAGAGCTCTCAA 6974414 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || | || ||||| ||||| || || ||||| || ||||||||||| Sbjct 6974415 CCTCGAGAGTGATGGTCTTACCAGTGAGTGTTTTCACGAAAATTTGCAT 6974463 >seq3 Length=23459830 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 |||||| || || || || || |||||||| ||| ||| | | ||||||| | || Sbjct 23037341 ATGAAGCGTCGATTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCTTCAAGCTG 23037282 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||| || ||| | ||||| ||||| ||||| ||| |||||||||||||| || || Sbjct 23037281 TTTCCCGGCGAAAATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGGATCTT 23037222 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 || ||| | || || || ||| ||| || || | ||| ||||| || || || Sbjct 23037221 CGCCTTCACATTGTCGATGGTGTCGGATGATTCAACCTCAAGGGTTATGGTCTTCCCCGT 23037162 Query 15153 CAGAGTTTTTACAAAAATTTGCATATTT 15180 || ||||| || || || ||||| ||| Sbjct 23037161 TAGGGTTTTCACGAAGATCTGCATCTTT 23037134 >seq4 Length=18585056 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | |||| || || ||||||||||| || || || |||||||| ||| Sbjct 1278754 CCACCACGGAGCCTTAGCACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCC 1278813 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | | || || | ||||| |||||| | || | |||||| ||||| || Sbjct 1278814 AAAGTACGACCATCCTCAAGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGG 1278873 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| || || || || | || || || ||| | || || Sbjct 1278874 ATACCTTCCTTGTCCTGGATCTTAGCCTTCACGTTGTCAATGGTGTCGGAGCTCTCAACT 1278933 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | |||||||| || || || ||||| || || ||||| |||||| Sbjct 1278934 TCAAGAGTAATGGTCTTTCCAGTGAGAGTCTTCACGAAAATCTGCATA 1278981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357391969509995