Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11]
7 sequences; 119,667,750 total letters
Query= NC_013085.1
Length=194454
Score E
Sequences producing significant alignments: (Bits) Value
seq7 673 0.0
seq2 322 6e-83
seq6 313 3e-80
seq1 102 1e-16
>seq7
Length=154478
Score = 673 bits (746), Expect = 0.0
Identities = 745/993 (75%), Gaps = 0/993 (0%)
Strand=Plus/Plus
Query 7528 CTCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCAT 7587
|||| ||||||| ||||| ||||||||||||||||||||||| || ||||| ||||||||
Sbjct 404 CTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCAT 463
Query 7588 GCCAAGACCAGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATC 7647
||||| ||||||||| | | || ||||| || || | ||||| ||||||| |||
Sbjct 464 ACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACTATC 523
Query 7648 AATGATGGACTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAG 7707
|| | || |||||||| |||||||| || |||||||| ||||| || |||| ||| |
Sbjct 524 AACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAA 583
Query 7708 AGCAGTGAACCAGATGCCAACAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGA 7767
|||||| ||||| || || || || ||||| || || | |||||| || | ||||| ||
Sbjct 584 AGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGA 643
Query 7768 GTTGTTGAACGAAGCGTATTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGAT 7827
|||||||| ||| |||||||| |||| || ||||| || ||||||||||| || ||
Sbjct 644 ATTGTTGAAACTAGCATATTGGAAAATCAATCGGCCAAAATAACCGTGAGCAGCTACAAT 703
Query 7828 GTTGTAGGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGGGACTCAGACTCAGT 7887
|||||| || ||||||||||| ||||| | ||||| | || || ||| || ||
Sbjct 704 GTTGTAAGTTTCTTCTTCTTGCCCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGT 763
Query 7888 GGTTTCACGAACCAGAGAAGAGGTTACAAGCGAACCATGCATCGCACTGAACAGAGAACC 7947
|||||| | | || | ||| ||||| | ||||||||||| ||||| || || || ||
Sbjct 764 GGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAAAAGGGAGCC 823
Query 7948 ACCAAAGACACCAGCGACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGC 8007
|| || |||||||| || || | |||||| || |||||||| || ||||||||||| ||
Sbjct 824 GCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGC 883
Query 8008 TTGGAAGACAAGCATGTAGTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAA 8067
||||| |||| ||| ||||||| ||||||||||| || ||||||||| | ||||| ||
Sbjct 884 CTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAA 943
Query 8068 AGAACCTTGACCGAAAGGATAGACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGA 8127
| || ||||| | ||||||| | ||| ||||||| || || ||||| ||||| ||
Sbjct 944 ACTTCCCTGACCAATTGGATAGATCAAGAAAACAGCAGTCGCAGCTGCAACAGGAGCTGA 1003
Query 8128 GTATGCTACACAGATCCAGGGACGCATACCTAGACGGTAAGAAAGTTCCCACTCACGACC 8187
||||| ||| ||||| ||||||||||| |||||| || ||||||||||||||||||
Sbjct 1004 ATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACC 1063
Query 8188 CATGTATGCATAGATACCGATCAGGAAGTGGAAGATAACGAGTTGGAAAGGACCACCGTT 8247
||| || | | ||| | | ||||| | | || |||| ||||||| |||||
Sbjct 1064 CATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTT 1123
Query 8248 GTAGAGCCACTCATCAAGAGAAGCTGCTTCCCAGATGGGATAGAAGTGGAGACCAATAGC 8307
||| ||||| ||||||| || || ||||||||||| || || || || | ||||||||
Sbjct 1124 GTATAGCCATTCATCAACGGATGCAGCTTCCCAGATTGGGTAAAAATGCAATCCAATAGC 1183
Query 8308 GTTAGAAGAAGGAACAACAGCACCAGAGATGATGTTGTTGCCATACATGAGCGAACCAGC 8367
||||| ||||| || ||||| || || || ||||| || || | || || ||||
Sbjct 1184 TGCAGAAGTAGGAATAATGGCACCGGAAATAATATTGTTTCCGTAAAGAAGAGATCCAGA 1243
Query 8368 GACGGGTTCACGGATGCCGTCAATGTCCACAGGAGGAGCAGCGACGAAAGCGACGATGAA 8427
|| |||||||| || || ||||| || || ||||||||||| | ||| |||| || ||
Sbjct 1244 AACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAATAAA 1303
Query 8428 ACAAATAGCAGCAGCGAGCAGCGTAGGAATCATCAGGACACCGAACCAACCGACATACAG 8487
| | || || | | | ||||| ||||||| ||||| ||||| || | || ||
Sbjct 1304 AACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAG 1363
Query 8488 ACGATTGTTGGTGGAGGTTACCCAGTTACAGAA 8520
||| || | ||| |||| ||||||||||||
Sbjct 1364 ACGGTTTTCAGTGCTAGTTATCCAGTTACAGAA 1396
Score = 569 bits (630), Expect = 3e-157
Identities = 736/1014 (73%), Gaps = 2/1014 (0%)
Strand=Plus/Minus
Query 6263 AGAGCGTTGCCTCTTGGCAATACTTCTTCAGGAAATACAAAGTTTTCATGTGGTTGATCC 6322
|||||||| || | ||| | || || ||||| |||| || ||||||||| || |||||
Sbjct 33768 AGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTGATCT 33709
Query 6323 ACTGGTGCCATCCAGGCACGTAGACCTTCATTCAATAGGATGTTCTTGGTATAGAACGTC 6382
| |||||||| ||||| | |||||| || || || || || || |||||||| |||
Sbjct 33708 TGAGCCGCCATCCAAGCACGAATACCTTCGTTTAAAAGAATATTTTTAGTATAGAAAGTC 33649
Query 6383 TCGAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATAAGCTCTAAGG 6442
|| || |||||||| |||||||| | ||| || || ||||| |||||||| || | |||
Sbjct 33648 TCAAATTCTGGATCTTCCGCTGCACGGATTTCCTGGGAAACGAAGTCATAGGCACGTAGG 33589
Query 6443 TTAAGTGCAAGACCAATAATACCAATGCTAGAGGTCCAAAGACCCATAACAGGAACAAAC 6502
|| | || | ||| | | |||| | |||| | ||| | || || |||||
Sbjct 33588 TTCAAAGCTAAACCGACTACTCCAAGAGCACTCATCCATAAACCAGTTACCGGTACAAAT 33529
Query 6503 AGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCTGAGACCAG 6562
| |||||||||||||| |||||| |||||| || || | |||||||| || |||||
Sbjct 33528 AACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGTGACCAA 33469
Query 6563 AAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAAACGCCTTG 6622
|| || ||||| |||||||| ||||| || || || |||| || || | ||| || |
Sbjct 33468 AAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCGGCTTGAGTTGGGTTAAAAGCACGG 33409
Query 6623 AAAGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCGTGAATA 6682
|| ||||||| |||||||||||||| |||||||| |||||||||||||| ||||||
Sbjct 33408 AATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACAGTAGCACCATGAATA 33349
Query 6683 GCACAGAGCAATGCTCCACCTAAGATACCTGCTACACCCATCATATGAAACGGGTTGAGC 6742
|| || |||| || | || | | ||| || || |||||||||||||| ||||| |
Sbjct 33348 GCGCATAGCAGAGCCGCGCCCAGTACACCGGCGACTCCCATCATATGAAATGGGTTCAAT 33289
Query 6743 GTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACACCAAAC 6802
||||| || || || || || | ||||| | ||| || ||||| || || ||||||||
Sbjct 33288 GTCCAATTATGAAACCCTTGGAAAAAGAGGATGAATCGAAATATAGCCGCTACACCAAAA 33229
Query 6803 GACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATACATGAGAAAGACAGACACAAAG 6862
|||||||||||||||| || || || || ||||| || || |||||||| |||||
Sbjct 33228 CTAGGCGCAAAGAACCAACCAGATTGACCTAGTGGATAAATTAGGAAGACAGAAACAAAA 33169
Query 6863 ACAGCAATGGGACCAGAAAACGCGATTGCATTGTAGGGACGAATACCGACTAGA-CGTGC 6921
||||||||||||||||| || ||||||||||| || || || | | || ||| || ||
Sbjct 33168 ACAGCAATGGGACCAGAGAATGCGATTGCATTATAAGGTCGCA-ATTGAACAGATCGAGC 33110
Query 6922 GATCTCAAACTGCCGAAGCATGAAACCTATAAGGGCAAAGGCTCCGTGGAGCGCCACAAA 6981
| ||||| || || | ||| |||||||| | || || || |||||||| || |||||
Sbjct 33109 AAGTTCAAATTGACGTAACATAAAACCTATTAATGCGAAAGCGCCGTGGAGAGCAACAAA 33050
Query 6982 AGGCCATAGTCCCCCAAGTTGGAGCCAGCGGACGAAATCTCCCTGAGCTTCTGGACCCCA 7041
|| |||||| || || | ||| ||| || |||||||| || ||||| ||||||||
Sbjct 33049 AGCCCATAGACCACCTAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCAGGACCCCA 32990
Query 7042 TAGAAGAAGTAGGGAATGTCCGAGAGCGTCAGCAGGAGTTGATACAGCAGCAGTAAGGAA 7101
|| | | | ||||| | | | | ||||||||| || || ||||| || | ||
Sbjct 32989 CAGTAACAACAAAGAATGCGCTAAACTATTAGCAGGAGTAGAAACTGCAGCGGTTAAAAA 32930
Query 7102 ATTACATCCCTCAAGATACGAAGAAGCAATCCCGTGAGTGTACCAGCTCGTGACGAAAGT 7161
||| || || || | ||| ||| || | || ||||| ||||| || || || ||
Sbjct 32929 ATTGCAACCTTCTAAATAGGAACTGGCCAATCCATGAGTATACCATGAAGTTACAAAGGT 32870
Query 7162 TGTGCCCGTGAGCCAACCGCCCAGTGCCAGGTAAGCAGTAGGGAACAGAAGAAGACCTGA 7221
||| || |||| |||||| || | || | || ||| ||| || || | ||||| ||
Sbjct 32869 TGTACCTGTGAACCAACCCCCTAAAGCGAAATAGGCACAAGGAAAGAGCAATAGACCAGA 32810
Query 7222 CCAACCAACAAAAACGAACCTATCACGCTTAAGCCAGTCATCGAGTACATCAAA 7275
|||||| ||||||||||| | || | | | ||||||||| | | ||||||
Sbjct 32809 CCAACCTACAAAAACGAAGCGGTCCCTCCGTAACCAGTCATCCATAATATCAAA 32756
>seq2
Length=19698289
Score = 322 bits (356), Expect = 6e-83
Identities = 381/514 (74%), Gaps = 13/514 (3%)
Strand=Plus/Plus
Query 7528 CTCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCAT 7587
|||| ||||||| ||||| ||||||||||||||||||||||| || ||||| ||||| ||
Sbjct 3331588 CTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCTAT 3331647
Query 7588 GCCAAGACCAGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATC 7647
|||| ||||||||| | | || ||||| || || | ||||| ||||||| |||
Sbjct 3331648 ACCAAAGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGCCCTTGACTATC 3331707
Query 7648 AATGATGGACTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAG 7707
|| | || |||||||| || ||||| || |||||||| ||||| ||||||| ||| |
Sbjct 3331708 AACTACTGATTGGTTGAAATTTAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAA 3331767
Query 7708 AGCAGTGAACCAGATGCCAACAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGA 7767
|||||| ||||| || || || || ||||| || || | |||||| || | ||||| ||
Sbjct 3331768 AGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGA 3331827
Query 7768 GTTGTTGAACGAAGCGTATTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGAT 7827
||||||| | ||||||||| || ||||| || || |||||||| || ||
Sbjct 3331828 ATTGTTGA---------AACGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAAT 3331878
Query 7828 GTTGTAGGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGGGACTCAGACTCAGT 7887
|||||| || | ||||||||||||||| | ||||| | || || ||| || |
Sbjct 3331879 GTTGTAAGTTTATTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTAT 3331938
Query 7888 GGTTTCACGAACCAGAGAAGAGGTTA-CAAGCGAACCATGCATCGCACTGAACAGAGAAC 7946
|||||| | | || | ||| |||| |||| | ||||| || ||||| || || || |
Sbjct 3331939 GGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCCATGTATAGCACTAAATAGGGAGC 3331998
Query 7947 CACCAAAGACACCAGCGACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTG 8006
| || || |||||||| || || | |||||| || |||||||| || ||||||||||| |
Sbjct 3331999 CGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAG 3332058
Query 8007 CTTGGAAGACAAGCATGTAGTTGAACGTACCAGA 8040
| |||| | || ||| ||| | ||||||| ||
Sbjct 3332059 CCTGGA--ATAATCAT-TAGAAGCACGTACCGGA 3332089
>seq6
Length=366924
Score = 313 bits (346), Expect = 3e-80
Identities = 379/514 (74%), Gaps = 13/514 (3%)
Strand=Plus/Minus
Query 7528 CTCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCAT 7587
|||| ||||||| ||||| ||||||||||||||||||||||| || ||||| ||||| ||
Sbjct 334822 CTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCTAT 334763
Query 7588 GCCAAGACCAGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATC 7647
|||| ||||||||| | | || ||||| || || | ||||| ||||||| |||
Sbjct 334762 ACCAAAGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGCCCTTGACTATC 334703
Query 7648 AATGATGGACTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAG 7707
|| | || |||||||| || ||||| || |||||||| ||||| ||||||| ||| |
Sbjct 334702 AACTACTGATTGGTTGAAATTTAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAA 334643
Query 7708 AGCAGTGAACCAGATGCCAACAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGA 7767
|||||| ||||| || || || || ||||| || || | |||||| || | ||||| ||
Sbjct 334642 AGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGA 334583
Query 7768 GTTGTTGAACGAAGCGTATTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGAT 7827
||||||| | ||||||||| || ||||| || || |||||||| || ||
Sbjct 334582 ATTGTTGA---------AACGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAAT 334532
Query 7828 GTTGTAGGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGGGACTCAGACTCAGT 7887
|||||| || | ||||||||||||||| | ||||| | || || ||| || |
Sbjct 334531 GTTGTAAGTTTATTCTTCTTGACCGAATCTGTAACCTTGATTAGCAGATTCATTTTCTAT 334472
Query 7888 GGTTTCACGAACCAGAGAAGAGGTTA-CAAGCGAACCATGCATCGCACTGAACAGAGAAC 7946
|||||| | | || | ||| |||| |||| | ||||| || ||||| || || || |
Sbjct 334471 GGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCCATGTATAGCACTAAATAGGGAGC 334412
Query 7947 CACCAAAGACACCAGCGACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTG 8006
| || || |||||||| || || | |||||| || |||||||| || ||| |||||| |
Sbjct 334411 CGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGAAGTGCTCAG 334352
Query 8007 CTTGGAAGACAAGCATGTAGTTGAACGTACCAGA 8040
| |||| | || ||| ||| | ||||||| ||
Sbjct 334351 CCTGGA--ATAATCAT-TAGAAGCACGTACCGGA 334321
>seq1
Length=30427671
Score = 102 bits (112), Expect = 1e-16
Identities = 142/199 (71%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 10249 GTGGGATAAGAAACACAGGTCAGAAGGAAACCAGCATCGATCTGGTCATCATCAAGGAAC 10308
|| || |||| | |||| || |||| || || || | ||||| ||||||||||||||
Sbjct 22444965 GTAGGGTAAGCAGCACAAGTGAGAACAAACCCTTCACCAATCTGTTCATCATCAAGGAAA 22444906
Query 10309 GATTGATCGCTTTGATCTACCGTACCCGAGATGAGTTTGCCTGCACAACTCGAACAGGCA 10368
|| || ||||| || | || || | | ||| || ||||| |||||||| | |
Sbjct 22444905 CTCTGGTCAGACTGATCAACAGATCCAGACACAACTTTACCAGCACAGCTCGAACAAGAA 22444846
Query 10369 CCAGCTCGGCACGAGTAGTTGAGGTCAATGCCTGCTTCTTCAGCAGCATCCAGAATGTAC 10428
||||| ||||| ||||| | || || || ||||| ||||||||||| |||| |||
Sbjct 22444845 CCAGCACGGCAAGAGTAAGGCAAATCGATTCCAGCTTCCTCAGCAGCATCAAGAACGTAG 22444786
Query 10429 TGATCGTCAGCACACTCAA 10447
||||| |||||||||
Sbjct 22444785 ACGTCGTCGTCACACTCAA 22444767
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622124745564080
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