Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq7 673 0.0 seq2 322 6e-83 seq6 313 3e-80 seq1 102 1e-16 >seq7 Length=154478 Score = 673 bits (746), Expect = 0.0 Identities = 745/993 (75%), Gaps = 0/993 (0%) Strand=Plus/Plus Query 7528 CTCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCAT 7587 |||| ||||||| ||||| ||||||||||||||||||||||| || ||||| |||||||| Sbjct 404 CTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCAT 463 Query 7588 GCCAAGACCAGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATC 7647 ||||| ||||||||| | | || ||||| || || | ||||| ||||||| ||| Sbjct 464 ACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACTATC 523 Query 7648 AATGATGGACTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAG 7707 || | || |||||||| |||||||| || |||||||| ||||| || |||| ||| | Sbjct 524 AACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAA 583 Query 7708 AGCAGTGAACCAGATGCCAACAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGA 7767 |||||| ||||| || || || || ||||| || || | |||||| || | ||||| || Sbjct 584 AGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGA 643 Query 7768 GTTGTTGAACGAAGCGTATTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGAT 7827 |||||||| ||| |||||||| |||| || ||||| || ||||||||||| || || Sbjct 644 ATTGTTGAAACTAGCATATTGGAAAATCAATCGGCCAAAATAACCGTGAGCAGCTACAAT 703 Query 7828 GTTGTAGGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGGGACTCAGACTCAGT 7887 |||||| || ||||||||||| ||||| | ||||| | || || ||| || || Sbjct 704 GTTGTAAGTTTCTTCTTCTTGCCCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGT 763 Query 7888 GGTTTCACGAACCAGAGAAGAGGTTACAAGCGAACCATGCATCGCACTGAACAGAGAACC 7947 |||||| | | || | ||| ||||| | ||||||||||| ||||| || || || || Sbjct 764 GGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAAAAGGGAGCC 823 Query 7948 ACCAAAGACACCAGCGACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGC 8007 || || |||||||| || || | |||||| || |||||||| || ||||||||||| || Sbjct 824 GCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGC 883 Query 8008 TTGGAAGACAAGCATGTAGTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAA 8067 ||||| |||| ||| ||||||| ||||||||||| || ||||||||| | ||||| || Sbjct 884 CTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAA 943 Query 8068 AGAACCTTGACCGAAAGGATAGACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGA 8127 | || ||||| | ||||||| | ||| ||||||| || || ||||| ||||| || Sbjct 944 ACTTCCCTGACCAATTGGATAGATCAAGAAAACAGCAGTCGCAGCTGCAACAGGAGCTGA 1003 Query 8128 GTATGCTACACAGATCCAGGGACGCATACCTAGACGGTAAGAAAGTTCCCACTCACGACC 8187 ||||| ||| ||||| ||||||||||| |||||| || |||||||||||||||||| Sbjct 1004 ATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACC 1063 Query 8188 CATGTATGCATAGATACCGATCAGGAAGTGGAAGATAACGAGTTGGAAAGGACCACCGTT 8247 ||| || | | ||| | | ||||| | | || |||| ||||||| ||||| Sbjct 1064 CATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTT 1123 Query 8248 GTAGAGCCACTCATCAAGAGAAGCTGCTTCCCAGATGGGATAGAAGTGGAGACCAATAGC 8307 ||| ||||| ||||||| || || ||||||||||| || || || || | |||||||| Sbjct 1124 GTATAGCCATTCATCAACGGATGCAGCTTCCCAGATTGGGTAAAAATGCAATCCAATAGC 1183 Query 8308 GTTAGAAGAAGGAACAACAGCACCAGAGATGATGTTGTTGCCATACATGAGCGAACCAGC 8367 ||||| ||||| || ||||| || || || ||||| || || | || || |||| Sbjct 1184 TGCAGAAGTAGGAATAATGGCACCGGAAATAATATTGTTTCCGTAAAGAAGAGATCCAGA 1243 Query 8368 GACGGGTTCACGGATGCCGTCAATGTCCACAGGAGGAGCAGCGACGAAAGCGACGATGAA 8427 || |||||||| || || ||||| || || ||||||||||| | ||| |||| || || Sbjct 1244 AACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAATAAA 1303 Query 8428 ACAAATAGCAGCAGCGAGCAGCGTAGGAATCATCAGGACACCGAACCAACCGACATACAG 8487 | | || || | | | ||||| ||||||| ||||| ||||| || | || || Sbjct 1304 AACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAG 1363 Query 8488 ACGATTGTTGGTGGAGGTTACCCAGTTACAGAA 8520 ||| || | ||| |||| |||||||||||| Sbjct 1364 ACGGTTTTCAGTGCTAGTTATCCAGTTACAGAA 1396 Score = 569 bits (630), Expect = 3e-157 Identities = 736/1014 (73%), Gaps = 2/1014 (0%) Strand=Plus/Minus Query 6263 AGAGCGTTGCCTCTTGGCAATACTTCTTCAGGAAATACAAAGTTTTCATGTGGTTGATCC 6322 |||||||| || | ||| | || || ||||| |||| || ||||||||| || ||||| Sbjct 33768 AGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTGATCT 33709 Query 6323 ACTGGTGCCATCCAGGCACGTAGACCTTCATTCAATAGGATGTTCTTGGTATAGAACGTC 6382 | |||||||| ||||| | |||||| || || || || || || |||||||| ||| Sbjct 33708 TGAGCCGCCATCCAAGCACGAATACCTTCGTTTAAAAGAATATTTTTAGTATAGAAAGTC 33649 Query 6383 TCGAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATAAGCTCTAAGG 6442 || || |||||||| |||||||| | ||| || || ||||| |||||||| || | ||| Sbjct 33648 TCAAATTCTGGATCTTCCGCTGCACGGATTTCCTGGGAAACGAAGTCATAGGCACGTAGG 33589 Query 6443 TTAAGTGCAAGACCAATAATACCAATGCTAGAGGTCCAAAGACCCATAACAGGAACAAAC 6502 || | || | ||| | | |||| | |||| | ||| | || || ||||| Sbjct 33588 TTCAAAGCTAAACCGACTACTCCAAGAGCACTCATCCATAAACCAGTTACCGGTACAAAT 33529 Query 6503 AGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCTGAGACCAG 6562 | |||||||||||||| |||||| |||||| || || | |||||||| || ||||| Sbjct 33528 AACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGTGACCAA 33469 Query 6563 AAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAAACGCCTTG 6622 || || ||||| |||||||| ||||| || || || |||| || || | ||| || | Sbjct 33468 AAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCGGCTTGAGTTGGGTTAAAAGCACGG 33409 Query 6623 AAAGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCGTGAATA 6682 || ||||||| |||||||||||||| |||||||| |||||||||||||| |||||| Sbjct 33408 AATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACAGTAGCACCATGAATA 33349 Query 6683 GCACAGAGCAATGCTCCACCTAAGATACCTGCTACACCCATCATATGAAACGGGTTGAGC 6742 || || |||| || | || | | ||| || || |||||||||||||| ||||| | Sbjct 33348 GCGCATAGCAGAGCCGCGCCCAGTACACCGGCGACTCCCATCATATGAAATGGGTTCAAT 33289 Query 6743 GTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACACCAAAC 6802 ||||| || || || || || | ||||| | ||| || ||||| || || |||||||| Sbjct 33288 GTCCAATTATGAAACCCTTGGAAAAAGAGGATGAATCGAAATATAGCCGCTACACCAAAA 33229 Query 6803 GACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATACATGAGAAAGACAGACACAAAG 6862 |||||||||||||||| || || || || ||||| || || |||||||| ||||| Sbjct 33228 CTAGGCGCAAAGAACCAACCAGATTGACCTAGTGGATAAATTAGGAAGACAGAAACAAAA 33169 Query 6863 ACAGCAATGGGACCAGAAAACGCGATTGCATTGTAGGGACGAATACCGACTAGA-CGTGC 6921 ||||||||||||||||| || ||||||||||| || || || | | || ||| || || Sbjct 33168 ACAGCAATGGGACCAGAGAATGCGATTGCATTATAAGGTCGCA-ATTGAACAGATCGAGC 33110 Query 6922 GATCTCAAACTGCCGAAGCATGAAACCTATAAGGGCAAAGGCTCCGTGGAGCGCCACAAA 6981 | ||||| || || | ||| |||||||| | || || || |||||||| || ||||| Sbjct 33109 AAGTTCAAATTGACGTAACATAAAACCTATTAATGCGAAAGCGCCGTGGAGAGCAACAAA 33050 Query 6982 AGGCCATAGTCCCCCAAGTTGGAGCCAGCGGACGAAATCTCCCTGAGCTTCTGGACCCCA 7041 || |||||| || || | ||| ||| || |||||||| || ||||| |||||||| Sbjct 33049 AGCCCATAGACCACCTAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCAGGACCCCA 32990 Query 7042 TAGAAGAAGTAGGGAATGTCCGAGAGCGTCAGCAGGAGTTGATACAGCAGCAGTAAGGAA 7101 || | | | ||||| | | | | ||||||||| || || ||||| || | || Sbjct 32989 CAGTAACAACAAAGAATGCGCTAAACTATTAGCAGGAGTAGAAACTGCAGCGGTTAAAAA 32930 Query 7102 ATTACATCCCTCAAGATACGAAGAAGCAATCCCGTGAGTGTACCAGCTCGTGACGAAAGT 7161 ||| || || || | ||| ||| || | || ||||| ||||| || || || || Sbjct 32929 ATTGCAACCTTCTAAATAGGAACTGGCCAATCCATGAGTATACCATGAAGTTACAAAGGT 32870 Query 7162 TGTGCCCGTGAGCCAACCGCCCAGTGCCAGGTAAGCAGTAGGGAACAGAAGAAGACCTGA 7221 ||| || |||| |||||| || | || | || ||| ||| || || | ||||| || Sbjct 32869 TGTACCTGTGAACCAACCCCCTAAAGCGAAATAGGCACAAGGAAAGAGCAATAGACCAGA 32810 Query 7222 CCAACCAACAAAAACGAACCTATCACGCTTAAGCCAGTCATCGAGTACATCAAA 7275 |||||| ||||||||||| | || | | | ||||||||| | | |||||| Sbjct 32809 CCAACCTACAAAAACGAAGCGGTCCCTCCGTAACCAGTCATCCATAATATCAAA 32756 >seq2 Length=19698289 Score = 322 bits (356), Expect = 6e-83 Identities = 381/514 (74%), Gaps = 13/514 (3%) Strand=Plus/Plus Query 7528 CTCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCAT 7587 |||| ||||||| ||||| ||||||||||||||||||||||| || ||||| ||||| || Sbjct 3331588 CTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCTAT 3331647 Query 7588 GCCAAGACCAGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATC 7647 |||| ||||||||| | | || ||||| || || | ||||| ||||||| ||| Sbjct 3331648 ACCAAAGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGCCCTTGACTATC 3331707 Query 7648 AATGATGGACTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAG 7707 || | || |||||||| || ||||| || |||||||| ||||| ||||||| ||| | Sbjct 3331708 AACTACTGATTGGTTGAAATTTAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAA 3331767 Query 7708 AGCAGTGAACCAGATGCCAACAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGA 7767 |||||| ||||| || || || || ||||| || || | |||||| || | ||||| || Sbjct 3331768 AGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGA 3331827 Query 7768 GTTGTTGAACGAAGCGTATTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGAT 7827 ||||||| | ||||||||| || ||||| || || |||||||| || || Sbjct 3331828 ATTGTTGA---------AACGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAAT 3331878 Query 7828 GTTGTAGGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGGGACTCAGACTCAGT 7887 |||||| || | ||||||||||||||| | ||||| | || || ||| || | Sbjct 3331879 GTTGTAAGTTTATTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTAT 3331938 Query 7888 GGTTTCACGAACCAGAGAAGAGGTTA-CAAGCGAACCATGCATCGCACTGAACAGAGAAC 7946 |||||| | | || | ||| |||| |||| | ||||| || ||||| || || || | Sbjct 3331939 GGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCCATGTATAGCACTAAATAGGGAGC 3331998 Query 7947 CACCAAAGACACCAGCGACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTG 8006 | || || |||||||| || || | |||||| || |||||||| || ||||||||||| | Sbjct 3331999 CGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAG 3332058 Query 8007 CTTGGAAGACAAGCATGTAGTTGAACGTACCAGA 8040 | |||| | || ||| ||| | ||||||| || Sbjct 3332059 CCTGGA--ATAATCAT-TAGAAGCACGTACCGGA 3332089 >seq6 Length=366924 Score = 313 bits (346), Expect = 3e-80 Identities = 379/514 (74%), Gaps = 13/514 (3%) Strand=Plus/Minus Query 7528 CTCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCAT 7587 |||| ||||||| ||||| ||||||||||||||||||||||| || ||||| ||||| || Sbjct 334822 CTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCTAT 334763 Query 7588 GCCAAGACCAGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATC 7647 |||| ||||||||| | | || ||||| || || | ||||| ||||||| ||| Sbjct 334762 ACCAAAGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGCCCTTGACTATC 334703 Query 7648 AATGATGGACTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAG 7707 || | || |||||||| || ||||| || |||||||| ||||| ||||||| ||| | Sbjct 334702 AACTACTGATTGGTTGAAATTTAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAA 334643 Query 7708 AGCAGTGAACCAGATGCCAACAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGA 7767 |||||| ||||| || || || || ||||| || || | |||||| || | ||||| || Sbjct 334642 AGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGA 334583 Query 7768 GTTGTTGAACGAAGCGTATTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGAT 7827 ||||||| | ||||||||| || ||||| || || |||||||| || || Sbjct 334582 ATTGTTGA---------AACGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAAT 334532 Query 7828 GTTGTAGGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGGGACTCAGACTCAGT 7887 |||||| || | ||||||||||||||| | ||||| | || || ||| || | Sbjct 334531 GTTGTAAGTTTATTCTTCTTGACCGAATCTGTAACCTTGATTAGCAGATTCATTTTCTAT 334472 Query 7888 GGTTTCACGAACCAGAGAAGAGGTTA-CAAGCGAACCATGCATCGCACTGAACAGAGAAC 7946 |||||| | | || | ||| |||| |||| | ||||| || ||||| || || || | Sbjct 334471 GGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCCATGTATAGCACTAAATAGGGAGC 334412 Query 7947 CACCAAAGACACCAGCGACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTG 8006 | || || |||||||| || || | |||||| || |||||||| || ||| |||||| | Sbjct 334411 CGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGAAGTGCTCAG 334352 Query 8007 CTTGGAAGACAAGCATGTAGTTGAACGTACCAGA 8040 | |||| | || ||| ||| | ||||||| || Sbjct 334351 CCTGGA--ATAATCAT-TAGAAGCACGTACCGGA 334321 >seq1 Length=30427671 Score = 102 bits (112), Expect = 1e-16 Identities = 142/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 10249 GTGGGATAAGAAACACAGGTCAGAAGGAAACCAGCATCGATCTGGTCATCATCAAGGAAC 10308 || || |||| | |||| || |||| || || || | ||||| |||||||||||||| Sbjct 22444965 GTAGGGTAAGCAGCACAAGTGAGAACAAACCCTTCACCAATCTGTTCATCATCAAGGAAA 22444906 Query 10309 GATTGATCGCTTTGATCTACCGTACCCGAGATGAGTTTGCCTGCACAACTCGAACAGGCA 10368 || || ||||| || | || || | | ||| || ||||| |||||||| | | Sbjct 22444905 CTCTGGTCAGACTGATCAACAGATCCAGACACAACTTTACCAGCACAGCTCGAACAAGAA 22444846 Query 10369 CCAGCTCGGCACGAGTAGTTGAGGTCAATGCCTGCTTCTTCAGCAGCATCCAGAATGTAC 10428 ||||| ||||| ||||| | || || || ||||| ||||||||||| |||| ||| Sbjct 22444845 CCAGCACGGCAAGAGTAAGGCAAATCGATTCCAGCTTCCTCAGCAGCATCAAGAACGTAG 22444786 Query 10429 TGATCGTCAGCACACTCAA 10447 ||||| ||||||||| Sbjct 22444785 ACGTCGTCGTCACACTCAA 22444767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622124745564080