Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1 84.2 3e-11 seq3 82.4 9e-11 >seq1 Length=30427671 Score = 84.2 bits (92), Expect = 3e-11 Identities = 188/278 (68%), Gaps = 6/278 (2%) Strand=Plus/Plus Query 12792 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGC 12851 || ||||||||||| ||||| || ||||| || || ||||| | |||||||| | | Sbjct 18615747 AATCCATCCATCTCTGTCAACAGCTGATTAATAGTCTGTTCTCTCTCATCATTTCC--TC 18615804 Query 12852 ATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATAC 12909 | ||| || || | | ||| |||| || |||||||| || |||||||| || |||| Sbjct 18615805 CTCCCATCCCAGCTCCTCTCTGCCTACCCACAGCGTCAATCTCATCAATGAATACAATAC 18615864 Query 12910 ACGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCC 12968 | || | ||| || || || || | ||| | |||||| ||||| |||||| Sbjct 18615865 AAGG-GGCTTTAGACTTAGCCTTCTCGAACAAATCCCTAACTCTCGATGCACCCACACCC 18615923 Query 12969 ACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCC 13028 ||||| | ||| || || | | ||| | || || ||| || || | ||| || Sbjct 18615924 ACAAAAAGCTCTACGAACTCCGAGGCCGCGCAAGAGAAGAACGGCACTCCAGCTTCCCCA 18615983 Query 13029 GCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 13066 || | || | || ||||| ||||| ||||| || || Sbjct 18615984 GCCACCGCCCTAGCCAGGAGTGTCTTACCCGTACCAGG 18616021 >seq3 Length=23459830 Score = 82.4 bits (90), Expect = 9e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 ||| | ||| |||||||| ||||| | ||| || ||||| | || |||||||| || Sbjct 9980352 GTGTAAACCTTCGTCACGTGAGATCAATTCGTTTGAGAATGTTAATCCAGGCATGAGTCC 9980411 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 || ||||||| |||||| || | |||||| || ||||||||||| || || ||||| Sbjct 9980412 TCGTTTCTTCAGCCAGAAGATTGAACAAAAGCTTCCGGAGAAGAAGATACCTTCAACACA 9980471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613507146318120