Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11]
7 sequences; 119,667,750 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq3 111 2e-19
seq2 107 2e-18
seq5 104 3e-17
seq4 100 3e-16
>seq3
Length=23459830
Score = 111 bits (122), Expect = 2e-19
Identities = 141/194 (73%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
||||| ||||| |||||||||| || || || |||| || ||||| || ||||||||
Sbjct 23037328 TCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCTTCAAGCTGTTTCCCGGCGAAA 23037269
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522
||||| ||||||||||| | || | | |||||||| ||||||| ||| | |
Sbjct 23037268 ATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGGATCTTCGCCTTCACATTG 23037209
Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582
| | |||||| ||||| || || | || ||||| || ||||| || ||||| ||
Sbjct 23037208 TCGATGGTGTCGGATGATTCAACCTCAAGGGTTATGGTCTTCCCCGTTAGGGTTTTCACG 23037149
Query 46583 AAGATTTGCATTTT 46596
||||| ||||| ||
Sbjct 23037148 AAGATCTGCATCTT 23037135
>seq2
Length=19698289
Score = 107 bits (118), Expect = 2e-18
Identities = 140/194 (72%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
||||| ||||| ||||| |||| || || || |||| ||||||||||| ||||||||
Sbjct 19344891 TCCTTCTGGATGTTGTAATCGGCTAAGGTACGTCCGTCTTCGAGCTGCTTTCCGGCGAAA 19344832
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522
||||| ||||||||||| | || | | |||||||| |||||| ||||| |
Sbjct 19344831 ATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTG 19344772
Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582
| | ||||| || || || || | ||||| || || ||||| || ||||| ||
Sbjct 19344771 TCGATGGTGTCAGAGGACTCGACCTCGAGAGTGATCGTCTTCCCCGTTAGGGTTTTCACG 19344712
Query 46583 AAGATTTGCATTTT 46596
||||| ||||| ||
Sbjct 19344711 AAGATCTGCATCTT 19344698
>seq5
Length=26975502
Score = 104 bits (114), Expect = 3e-17
Identities = 164/231 (71%), Gaps = 8/231 (3%)
Strand=Plus/Plus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
|| ||||| | ||| | ||||| ||| | || ||||||||| || |||||||| |
Sbjct 772442 CCACCTCTGAGACGAAGCACCAAATGAAGGGTCGACTCCTTTTGAATGTTGTAGTCAGCA 772501
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
||||| | |||| || |||||||| ||||| || || | | |||||| || | ||
Sbjct 772502 AGAGTTCTTCCGTCTTCAAGCTGCTTACCGGCAAAGATAAGTCTCTGCTGATCCGGAGGG 772561
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACC-GTGTC---GCTCGATTC 46542
| | ||||||||| |||||| |||| ||| | || ||||| |||| ||
Sbjct 772562 ATTCCTTCCTTGTCCTGGATCTTTGCTTTGA-CGTTGTCAATAGTGTCAGAGCTC---TC 772617
Query 46543 CACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| |||| || ||||| ||||| ||||| || || ||||||||||||||
Sbjct 772618 AACCTCCAAAGTAATGGTCTTGCCAGTCAGAGTCTTGACAAAGATTTGCAT 772668
Score = 104 bits (114), Expect = 3e-17
Identities = 143/196 (73%), Gaps = 8/196 (4%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
||||||||||||||||||||| | ||||| | | || || |||||||| || |||||
Sbjct 6974044 CTCCTTTTGGATATTGTAGTCAGCAAGAGTCCTTCCATCTTCAAGCTGCTTACCAGCGAA 6974103
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | | |||||||| | || | | ||||||||| |||||| ||||| |||
Sbjct 6974104 AATAAGTCTTTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGGATCTTTGCCTTGA-CGT 6974162
Query 46522 CG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTT 46577
| | | ||||| ||| ||| || |||| || ||||||||||| ||||| || |
Sbjct 6974163 TGTCAATAGTGTCAGAGCT---TTCAACCTCCAAGGTAATGGTTTTGCCAGTCAGAGTCT 6974219
Query 46578 TAACAAAGATTTGCAT 46593
| |||||||| |||||
Sbjct 6974220 TGACAAAGATCTGCAT 6974235
Score = 96.9 bits (106), Expect = 4e-15
Identities = 160/230 (70%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
|| ||||| | ||| | ||||| ||| | || ||| |||||||| ||||| || |
Sbjct 6973781 CCACCTCTCAGACGAAGCACCAAATGAAGGGTTGACTCTTTTTGGATGTTGTAATCAGCA 6973840
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
|||||||| | || || |||||||| ||||| || || | | ||||||||| | ||
Sbjct 6973841 AGAGTGCGACCATCCTCTAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGGTCCGGTGGG 6973900
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 46543
| | ||| || || |||||| |||| | | | ||||| |||| ||
Sbjct 6973901 ATTCCCTCTTTATCTTGGATCTTAGCTTTGACATTGTCAATGGTGTCTGAGCTC---TCA 6973957
Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| || | ||||| ||||| |||||||| || || ||||||||||||||
Sbjct 6973958 ACCTCAAGGGTGATTGTTTTACCCGTCAGAGTCTTCACAAAGATTTGCAT 6974007
>seq4
Length=18585056
Score = 100 bits (110), Expect = 3e-16
Identities = 161/230 (70%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
||||| | | ||||||||||| || | |||| |||||| || || |||||||| |
Sbjct 1278982 CCTCCACGGAGACGCAACACCAAGTGAAGTGTAGACTCCTTCTGAATGTTGTAGTCAGCC 1279041
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
| ||| | | || || || || || |||||||| ||||| | ||||||||| | ||
Sbjct 1279042 AAAGTTCTACCATCTTCAAGTTGTTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGTGGG 1279101
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 46543
| | ||| |||||| |||||| |||| | | | ||||| |||| |||
Sbjct 1279102 ATACCCTCTTTGTCCTGGATCTTGGCTTTGACATTGTCGATAGTGTCAGAGCTC---TCC 1279158
Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| |||| ||||| || || || |||| ||| || |||||||| |||||
Sbjct 1279159 ACCTCCAAAGTGATAGTCTTTCCAGTCAACGTCTTGACAAAGATCTGCAT 1279208
Score = 100 bits (110), Expect = 3e-16
Identities = 154/217 (71%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
||||| |||| || | ||| |||||| ||||| |||||||||| | ||| || |
Sbjct 2719914 ACGCAGGACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTACGTCC 2719855
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497
|| || |||||||| || ||||| || | ||||||||||| | || | | |||||
Sbjct 2719854 ATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATACCTTCCTT 2719795
Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGA 46556
|||| |||||| ||||| ||| | | | |||||| |||||| || | ||||
Sbjct 2719794 GTCCTGGATCTTGGCCTTGA-CGTTGTCAATGGTGTCGGAGCTTTCCACTTCAAGGGTGA 2719736
Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|||| || || |||| || || || ||||| |||||
Sbjct 2719735 TGGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 2719699
Score = 91.5 bits (100), Expect = 2e-13
Identities = 137/192 (71%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
||||| ||||||||||| || | | || || | || || |||||||||||||||||
Sbjct 2718749 TCCTTCTGGATATTGTAATCAGCCAACGTACGGCCATCCTCTAGCTGCTTGCCGGCGAAA 2718690
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522
|| | | |||||| || | || | || |||||| ||| |||||| ||| | |||
Sbjct 2718689 ATAAGCCTCTGCTGATCCGGAGGAATGCCCTCCTTATCCTGGATCTTGGCCTT-AACGTT 2718631
Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | | |||||| |||||| || | ||||| || || || || || || |||||
Sbjct 2718630 GTCGATGGTGTCGGAGCTTTCCACCTCGAGGGTGATTGTCTTTCCGGTGAGAGTCTTAAC 2718571
Query 46582 AAAGATTTGCAT 46593
|||||| |||||
Sbjct 2718570 AAAGATCTGCAT 2718559
Score = 87.8 bits (96), Expect = 2e-12
Identities = 137/195 (70%), Gaps = 6/195 (3%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| |||||||||| | ||| || | || || |||||||| || |||||
Sbjct 2588313 CTCCTTCTGGATGTTGTAGTCGGCCAAAGTACGTCCATCCTCAAGCTGCTTTCCAGCGAA 2588372
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | ||||||||||| | || | || ||||||||| |||||| ||| | |
Sbjct 2588373 GATGAGACGCTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTGGATCTTAGCCTTCACGTT 2588432
Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578
| | ||||| |||| || || || | |||||||| || || |||| || ||
Sbjct 2588433 ATCAATGGTGTCGGAGCTC---TCAACTTCAAGAGTGATGGTCTTTCCGGTCAAAGTCTT 2588489
Query 46579 AACAAAGATTTGCAT 46593
|| ||||| |||||
Sbjct 2588490 TACGAAGATCTGCAT 2588504
Score = 86.0 bits (94), Expect = 7e-12
Identities = 139/196 (71%), Gaps = 8/196 (4%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| |||||||||||||| | ||||| | | || || | |||||| ||||||||
Sbjct 2718978 CTCCTTCTGGATATTGTAGTCAGCAAGAGTTCTGCCATCCTCCAACTGCTTTCCGGCGAA 2718919
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|||| | ||||||||| | || | | ||| ||||| |||||| ||||| |||
Sbjct 2718918 GATCAGCCTCTGCTGGTCCGGAGGAATACCCTCTTTGTCTTGGATCTTGGCCTTGA-CGT 2718860
Query 46522 CG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTT 46577
| | | ||||| ||| ||||| || | || || || || ||||| || ||||
Sbjct 2718859 TGTCGATGGTGTCAGAACTC---TCCACCTCAAGAGTAATCGTCTTTCCCGTTAGGGTTT 2718803
Query 46578 TAACAAAGATTTGCAT 46593
|||| || || |||||
Sbjct 2718802 TAACGAAAATCTGCAT 2718787
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565238350541640
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