Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq3 111 2e-19 seq2 107 2e-18 seq5 104 3e-17 seq4 100 3e-16 >seq3 Length=23459830 Score = 111 bits (122), Expect = 2e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| |||||||||| || || || |||| || ||||| || |||||||| Sbjct 23037328 TCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCTTCAAGCTGTTTCCCGGCGAAA 23037269 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| ||||||||||| | || | | |||||||| ||||||| ||| | | Sbjct 23037268 ATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGGATCTTCGCCTTCACATTG 23037209 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | |||||| ||||| || || | || ||||| || ||||| || ||||| || Sbjct 23037208 TCGATGGTGTCGGATGATTCAACCTCAAGGGTTATGGTCTTCCCCGTTAGGGTTTTCACG 23037149 Query 46583 AAGATTTGCATTTT 46596 ||||| ||||| || Sbjct 23037148 AAGATCTGCATCTT 23037135 >seq2 Length=19698289 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| ||||| |||| || || || |||| ||||||||||| |||||||| Sbjct 19344891 TCCTTCTGGATGTTGTAATCGGCTAAGGTACGTCCGTCTTCGAGCTGCTTTCCGGCGAAA 19344832 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| ||||||||||| | || | | |||||||| |||||| ||||| | Sbjct 19344831 ATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTG 19344772 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||||| || || || || | ||||| || || ||||| || ||||| || Sbjct 19344771 TCGATGGTGTCAGAGGACTCGACCTCGAGAGTGATCGTCTTCCCCGTTAGGGTTTTCACG 19344712 Query 46583 AAGATTTGCATTTT 46596 ||||| ||||| || Sbjct 19344711 AAGATCTGCATCTT 19344698 >seq5 Length=26975502 Score = 104 bits (114), Expect = 3e-17 Identities = 164/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | ||| | ||||| ||| | || ||||||||| || |||||||| | Sbjct 772442 CCACCTCTGAGACGAAGCACCAAATGAAGGGTCGACTCCTTTTGAATGTTGTAGTCAGCA 772501 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| | |||| || |||||||| ||||| || || | | |||||| || | || Sbjct 772502 AGAGTTCTTCCGTCTTCAAGCTGCTTACCGGCAAAGATAAGTCTCTGCTGATCCGGAGGG 772561 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACC-GTGTC---GCTCGATTC 46542 | | ||||||||| |||||| |||| ||| | || ||||| |||| || Sbjct 772562 ATTCCTTCCTTGTCCTGGATCTTTGCTTTGA-CGTTGTCAATAGTGTCAGAGCTC---TC 772617 Query 46543 CACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||| || ||||| ||||| ||||| || || |||||||||||||| Sbjct 772618 AACCTCCAAAGTAATGGTCTTGCCAGTCAGAGTCTTGACAAAGATTTGCAT 772668 Score = 104 bits (114), Expect = 3e-17 Identities = 143/196 (73%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||||||||||||||||||||| | ||||| | | || || |||||||| || ||||| Sbjct 6974044 CTCCTTTTGGATATTGTAGTCAGCAAGAGTCCTTCCATCTTCAAGCTGCTTACCAGCGAA 6974103 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | | |||||||| | || | | ||||||||| |||||| ||||| ||| Sbjct 6974104 AATAAGTCTTTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGGATCTTTGCCTTGA-CGT 6974162 Query 46522 CG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTT 46577 | | | ||||| ||| ||| || |||| || ||||||||||| ||||| || | Sbjct 6974163 TGTCAATAGTGTCAGAGCT---TTCAACCTCCAAGGTAATGGTTTTGCCAGTCAGAGTCT 6974219 Query 46578 TAACAAAGATTTGCAT 46593 | |||||||| ||||| Sbjct 6974220 TGACAAAGATCTGCAT 6974235 Score = 96.9 bits (106), Expect = 4e-15 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | ||| | ||||| ||| | || ||| |||||||| ||||| || | Sbjct 6973781 CCACCTCTCAGACGAAGCACCAAATGAAGGGTTGACTCTTTTTGGATGTTGTAATCAGCA 6973840 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 |||||||| | || || |||||||| ||||| || || | | ||||||||| | || Sbjct 6973841 AGAGTGCGACCATCCTCTAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGGTCCGGTGGG 6973900 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 46543 | | ||| || || |||||| |||| | | | ||||| |||| || Sbjct 6973901 ATTCCCTCTTTATCTTGGATCTTAGCTTTGACATTGTCAATGGTGTCTGAGCTC---TCA 6973957 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || | ||||| ||||| |||||||| || || |||||||||||||| Sbjct 6973958 ACCTCAAGGGTGATTGTTTTACCCGTCAGAGTCTTCACAAAGATTTGCAT 6974007 >seq4 Length=18585056 Score = 100 bits (110), Expect = 3e-16 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||||||||||| || | |||| |||||| || || |||||||| | Sbjct 1278982 CCTCCACGGAGACGCAACACCAAGTGAAGTGTAGACTCCTTCTGAATGTTGTAGTCAGCC 1279041 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | ||| | | || || || || || |||||||| ||||| | ||||||||| | || Sbjct 1279042 AAAGTTCTACCATCTTCAAGTTGTTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGTGGG 1279101 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 46543 | | ||| |||||| |||||| |||| | | | ||||| |||| ||| Sbjct 1279102 ATACCCTCTTTGTCCTGGATCTTGGCTTTGACATTGTCGATAGTGTCAGAGCTC---TCC 1279158 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||| ||||| || || || |||| ||| || |||||||| ||||| Sbjct 1279159 ACCTCCAAAGTGATAGTCTTTCCAGTCAACGTCTTGACAAAGATCTGCAT 1279208 Score = 100 bits (110), Expect = 3e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| |||| || | ||| |||||| ||||| |||||||||| | ||| || | Sbjct 2719914 ACGCAGGACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTACGTCC 2719855 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || |||||||| || ||||| || | ||||||||||| | || | | ||||| Sbjct 2719854 ATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATACCTTCCTT 2719795 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGA 46556 |||| |||||| ||||| ||| | | | |||||| |||||| || | |||| Sbjct 2719794 GTCCTGGATCTTGGCCTTGA-CGTTGTCAATGGTGTCGGAGCTTTCCACTTCAAGGGTGA 2719736 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| || || |||| || || || ||||| ||||| Sbjct 2719735 TGGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 2719699 Score = 91.5 bits (100), Expect = 2e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||||||||| || | | || || | || || ||||||||||||||||| Sbjct 2718749 TCCTTCTGGATATTGTAATCAGCCAACGTACGGCCATCCTCTAGCTGCTTGCCGGCGAAA 2718690 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | | |||||| || | || | || |||||| ||| |||||| ||| | ||| Sbjct 2718689 ATAAGCCTCTGCTGATCCGGAGGAATGCCCTCCTTATCCTGGATCTTGGCCTT-AACGTT 2718631 Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | |||||| |||||| || | ||||| || || || || || || ||||| Sbjct 2718630 GTCGATGGTGTCGGAGCTTTCCACCTCGAGGGTGATTGTCTTTCCGGTGAGAGTCTTAAC 2718571 Query 46582 AAAGATTTGCAT 46593 |||||| ||||| Sbjct 2718570 AAAGATCTGCAT 2718559 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/195 (70%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||||| | ||| || | || || |||||||| || ||||| Sbjct 2588313 CTCCTTCTGGATGTTGTAGTCGGCCAAAGTACGTCCATCCTCAAGCTGCTTTCCAGCGAA 2588372 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | || ||||||||| |||||| ||| | | Sbjct 2588373 GATGAGACGCTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTGGATCTTAGCCTTCACGTT 2588432 Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | ||||| |||| || || || | |||||||| || || |||| || || Sbjct 2588433 ATCAATGGTGTCGGAGCTC---TCAACTTCAAGAGTGATGGTCTTTCCGGTCAAAGTCTT 2588489 Query 46579 AACAAAGATTTGCAT 46593 || ||||| ||||| Sbjct 2588490 TACGAAGATCTGCAT 2588504 Score = 86.0 bits (94), Expect = 7e-12 Identities = 139/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| |||||||||||||| | ||||| | | || || | |||||| |||||||| Sbjct 2718978 CTCCTTCTGGATATTGTAGTCAGCAAGAGTTCTGCCATCCTCCAACTGCTTTCCGGCGAA 2718919 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| | ||||||||| | || | | ||| ||||| |||||| ||||| ||| Sbjct 2718918 GATCAGCCTCTGCTGGTCCGGAGGAATACCCTCTTTGTCTTGGATCTTGGCCTTGA-CGT 2718860 Query 46522 CG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTT 46577 | | | ||||| ||| ||||| || | || || || || ||||| || |||| Sbjct 2718859 TGTCGATGGTGTCAGAACTC---TCCACCTCAAGAGTAATCGTCTTTCCCGTTAGGGTTT 2718803 Query 46578 TAACAAAGATTTGCAT 46593 |||| || || ||||| Sbjct 2718802 TAACGAAAATCTGCAT 2718787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565238350541640