Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1 129 7e-25 seq2 116 5e-21 seq5 109 7e-19 >seq1 Length=30427671 Score = 129 bits (142), Expect = 7e-25 Identities = 304/452 (67%), Gaps = 18/452 (4%) Strand=Plus/Plus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 || ||||| || ||||| | || | ||| ||||| || || | | || ||||| Sbjct 1961378 CGGTCAAAACGCCCTGGTCTTAGCAAAGCGGAGTCAAGAATGTCTGCTCTGTTGGTTGCA 1961437 Query 15945 GCGATGACAACAATACCTGTTTCGTTA---TCAAAACCATCCATCTCTGTCAAAAGCTGG 16001 || | || | || ||| || |||| ||||||||||||||||| |||| ||||| Sbjct 1961438 GCAACTACGATAACACCAGT---GTTACCCTCAAAACCATCCATCTCAGTCAGGAGCTGA 1961494 Query 16002 TTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTT 16058 |||| || ||||| | ||||||||| || |||| |||| | | |||| | Sbjct 1961495 TTAAGGGTCTGTTCTCTTTCATCATTACCT---CCACCAATTCCAGTTCCTCTTTGCCTA 1961551 Query 16059 CCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCA 16118 || || ||||| || ||||| | ||| || |||||||| |||||| || || Sbjct 1961552 CCAACAGCATCTATTTCATCCACGAAAACAATGCATGGAGCATTTTCTTTGGCTTTTTTG 1961611 Query 16119 AAGAGATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGCGG 16176 || ||||| || || |||| || || ||||| ||||||||||| ||||| | | Sbjct 1961612 AAAAGATCGCG--GACCCTTGATGCACCAACACCGACAAACATCTCAACAAACTCAGAAC 1961669 Query 16177 CGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTC 16235 | | | || | | |||||| ||| || |||||| ||||||||| || | || || Sbjct 1961670 CCG-AGATGGAAAAGAAGGGCACACCAGCTTCACCAGCAATGGCTTTTGCCAACAGGGTT 1961728 Query 16236 TTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCA 16295 || || ||||| || ||| | || || ||||| ||| ||| ||| ||| || Sbjct 1961729 TTCCCGGTACCAGGAGGACCAACAAGAAGAACACCTTTTGGGATCCGGGCACCAACCGCA 1961788 Query 16296 AAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 16327 | | |||||||| | ||| ||||| ||||| Sbjct 1961789 GTGAACCTCTCAGGCTTCTTCAGAAACTCCAC 1961820 Score = 109 bits (120), Expect = 7e-19 Identities = 195/280 (70%), Gaps = 6/280 (2%) Strand=Plus/Plus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| ||||||||||||||||| ||||| |||||||| ||||| | |||||||| || Sbjct 18615746 AAATCCATCCATCTCTGTCAACAGCTGATTAATAGTCTGTTCTCTCTCATCATTTCCT-- 18615803 Query 16034 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 | | ||| ||||| | | ||| | ||||| || ||||||||||||||||| || || Sbjct 18615804 CCTCCCATCCCAGCTCCTCTCTGCCTACCCACAGCGTCAATCTCATCAATGAATACAATA 18615863 Query 16092 CATGGTTGATTTTCGC-GAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACC 16150 || || | ||| | ||| || || | ||||| || | | || |||||||| Sbjct 18615864 CAAGG-GGCTTTAGACTTAGCCTTCTCGAACAAATCCCTAACTCTCGATGCACCCACACC 18615922 Query 16151 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 16210 ||||| | ||| || || | | ||| | || || ||| || || || ||| || Sbjct 18615923 CACAAAAAGCTCTACGAACTCCGAGGCCGCGCAAGAGAAGAACGGCACTCCAGCTTCCCC 18615982 Query 16211 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGC 16250 || | || | || || || |||||||||||||| ||| Sbjct 18615983 AGCCACCGCCCTAGCCAGGAGTGTCTTACCCGTACCAGGC 18616022 >seq2 Length=19698289 Score = 116 bits (128), Expect = 5e-21 Identities = 281/417 (67%), Gaps = 14/417 (3%) Strand=Plus/Minus Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACC--TGTTTCGTTATCAA 15975 ||||| || || | | ||| ||||| || | || | || ||| |||| | || ||| Sbjct 13175827 TCAAGAATGTCTGCTCTATTGGTTGCAGCAACTACGATAACACCAGTGTTACCTT--CAA 13175770 Query 15976 AACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 16035 ||||||||||||| || | ||||| || | || ||||| | ||||||||| || Sbjct 13175769 AACCATCCATCTCAGTTAGGAGCTGATTGAGGGTCTGTTCTCTTTCATCATTACCTCC-- 13175712 Query 16036 TACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 16092 |||| || | | | |||| | || || ||||| || ||||| | ||||| |||| Sbjct 13175711 -ACCAATTCCGGTTCCTCTTTGCCTACCAACAGCATCTATTTCATCTACAAAGACAATGC 13175653 Query 16093 ATGGTTGATTTTCGCGAGCGA-CTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCA 16151 | || || || || ||| ||| ||||| || || | | ||| || ||||| Sbjct 13175652 AAGGAGCGTTCTCCTTGGCTTTCTTGAAA-AGATCACGGACTCTCGAGGCACCAACACCG 13175594 Query 16152 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACC 16210 ||||||||||| ||||| | | | || || | || ||| || ||| || |||||| Sbjct 13175593 ACAAACATCTCAACAAACTCAGAACCAGAG-ATGGAGAAGAAAGGCACACCAGCTTCACC 13175535 Query 16211 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 16270 ||||||||| || | ||| || || || ||||| || ||| || || |||| Sbjct 13175534 AGCAATGGCTTTTGCCAAAAGGGTTTTCCCGGTACCAGGAGGACCAATAAGAAGAACACC 13175475 Query 16271 TCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 16327 | || |||||||| ||| || | |||||||||||| ||| | ||| ||||| Sbjct 13175474 TTTCGGGATCTTGGCACCAACCGCAGTGAATCTCTCAGGTTTCTTCAAAAACTCCAC 13175418 >seq5 Length=26975502 Score = 109 bits (120), Expect = 7e-19 Identities = 198/282 (70%), Gaps = 12/282 (4%) Strand=Plus/Minus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| ||||||||||| ||||||||||| |||||||| ||||||| |||||||| | Sbjct 16903807 AAACCCATCCATCTCAGTCAAAAGCTGATTAATAGTCTGTTCCCTCTCATCATTTCC--A 16903750 Query 16034 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 | ||| ||||| | | ||| | || || ||||||||||||||||| || || || Sbjct 16903749 CCACCCATCCCAGCTCCTCTTTGTCTACCAACAGCATCAATCTCATCAATAAACACAATA 16903690 Query 16092 CATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCAC 16147 || || ||||| || || ||||| | ||||| || || || | || ||||| Sbjct 16903689 CAAGG--AGCTTTCGATTTCGCCTTCTCAAATAAATCCC-TA-ACTCTAGAAGCACCCAC 16903634 Query 16148 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 16207 ||||||||| | ||| ||||| | | || | ||| | ||| || || || ||| Sbjct 16903633 ACCAACAAAAAGCTCAACAAACTCCGAAGCAGCACACGAAAAGAACGGCACTCCAGCTTC 16903574 Query 16208 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 || || | |||| || | ||| ||||| |||||||| || Sbjct 16903573 TCCAGCCACAGCTCTAGCCAAAAGCGTCTTCCCCGTACCCGG 16903532 Score = 84.2 bits (92), Expect = 3e-11 Identities = 154/224 (69%), Gaps = 9/224 (4%) Strand=Plus/Plus Query 102099 GCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT 102158 || ||| |||| |||| ||| |||| |||| || ||||||||||| ||| | Sbjct 16408565 GCAATCGAAACCATTCCTTGTGACGAAAA--AAGCAGAATGGGCTATGAAATGGAT---- 16408618 Query 102159 ACAAAG--TCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCT 102216 ||| | || | ||| |||||| || || | || ||||| || ||||| ||||| | Sbjct 16408619 -CAACGGATCTCAAAGCTTCGCTGAGAGAATCGTAGCGTTTGCTTGCGTTGAAGGTATAT 16408677 Query 102217 TCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTC 102276 ||||||| ||| ||| || | || | ||| | ||||| |||||| | ||||| || | Sbjct 16408678 TCTTCTCCGGTAGCTTTTGTTCGATATTCTGGTTGAAGAAACGAGGTTTAATGCCTGGAC 16408737 Query 102277 TCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 102320 || || || ||||| | || || | ||||| || || ||| Sbjct 16408738 TCACTTTTTCAAACGAATTGATTTCGAGAGACGAAGGTCTTCAC 16408781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620742345685040