Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1 102 1e-16 seq2 98.7 1e-15 seq3 87.8 2e-12 >seq1 Length=30427671 Score = 102 bits (112), Expect = 1e-16 Identities = 297/452 (66%), Gaps = 18/452 (4%) Strand=Plus/Plus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || || ||||| ||||| | || | ||| |||||||| || | | ||| || || Sbjct 1961378 CGGTCAAAACGCCCTGGTCTTAGCAAAGCGGAGTCAAGAATGTCTGCTCTGTTGGTTGCA 1961437 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 |||| || | || ||||| | | || ||||| ||||| || || || ||||| || Sbjct 1961438 GCAACTACGATAACACCAGTGTTACCCTCAAAACCATCCATCTCAGTCAGGAGCTGATTA 1961497 Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAACG-CTT--CTTACCG 11679 | |||||||| | ||||| || | | |||| | | | | ||| | |||| Sbjct 1961498 AGGGTCTGTTCTCTTTCATCATT--ACCTCC-ACCAATTCCAGTTCCTCTTTGCCTACCA 1961554 Query 11680 ACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAA 11739 ||||| || || ||||| | ||| || || || || || | || | || |||| Sbjct 1961555 ACAGCATCTATTTCATCCACGAAAACAATGCATGGAGCATTTTCTTTGGCTTTTTTGAAA 1961614 Query 11740 AGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGAA 11799 || || || || | || |||||||| || ||||||||||| || | ||||| Sbjct 1961615 AGATCGCGGACCCTTGATGCACCAACACCGACAAACATCTCAACAAACT------CAGAA 1961668 Query 11800 CAC----TG--AATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTC 11853 | | || || |||||| ||| || |||||||| |||||| || | || || Sbjct 1961669 CCCGAGATGGAAAAGAAGGGCACACCAGCTTCACCAGCAATGGCTTTTGCCAACAGGGTT 1961728 Query 11854 TTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCA 11913 || || |||||||| | |||| | ||||| | || |||||| ||||||| || Sbjct 1961729 TTCCCGGTACCAGGAGGACCAACAAGAAGAACACCTTTTGGGATCCGGGCACCAACCGCA 1961788 Query 11914 AAGTAGCGCTCAGGCTTCTTGAGGAAGTCCAC 11945 | | | |||||||||||| || || ||||| Sbjct 1961789 GTGAACCTCTCAGGCTTCTTCAGAAACTCCAC 1961820 >seq2 Length=19698289 Score = 98.7 bits (108), Expect = 1e-15 Identities = 298/451 (66%), Gaps = 16/451 (4%) Strand=Plus/Minus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || || || || ||||| | | | |||| |||||||| || | | || || || Sbjct 13175860 CGGTCAAACCGTCCTGGCCTCAACAAAGCAGAGTCAAGAATGTCTGCTCTATTGGTTGCA 13175801 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 |||| || | || ||||| | | || ||||| ||||| || || || ||||| ||| Sbjct 13175800 GCAACTACGATAACACCAGTGTTACCTTCAAAACCATCCATCTCAGTTAGGAGCTGATTG 13175741 Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACC--TGCCGAA--CGCTT--CTTA 11676 | |||||||| | ||||| || | | ||||| | ||| | ||| | || Sbjct 13175740 AGGGTCTGTTCTCTTTCATCATTA-----CCT-CCACCAATTCCGGTTCCTCTTTGCCTA 13175687 Query 11677 CCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGT-TC 11735 || ||||| || || ||||| | || || || || || ||| | | || || | | Sbjct 13175686 CCAACAGCATCTATTTCATCTACAAAGACAATGCAAGGAGCGTTCTC-CTTGGCTTTCTT 13175628 Query 11736 GAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGC 11795 |||||| ||||| || | | || |||||||| || ||||||||||| || | | | Sbjct 13175627 GAAAAGATCACGGACTCTCGAGGCACCAACACCGACAAACATCTCAACAAACTCAGAACC 13175568 Query 11796 AGAACACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCT 11854 ||| | || | ||| || ||| || |||||||| |||||| || | || || | Sbjct 13175567 AGAG-ATGGAGAAGAAAGGCACACCAGCTTCACCAGCAATGGCTTTTGCCAAAAGGGTTT 13175509 Query 11855 TACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAA 11914 | || |||||||| | |||| ||||| | || ||||||||||||||| || Sbjct 13175508 TCCCGGTACCAGGAGGACCAATAAGAAGAACACCTTTCGGGATCTTGGCACCAACCGCAG 13175449 Query 11915 AGTAGCGCTCAGGCTTCTTGAGGAAGTCCAC 11945 | | | |||||| ||||| | || ||||| Sbjct 13175448 TGAATCTCTCAGGTTTCTTCAAAAACTCCAC 13175418 Score = 86.0 bits (94), Expect = 7e-12 Identities = 110/148 (74%), Gaps = 3/148 (2%) Strand=Plus/Minus Query 110272 ACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTC-GGT 110330 ||| || |||| | ||||||||| |||||||||||||||| ||| || | || | | || Sbjct 9295719 ACAAATCTGGGTAAAGCAATAGATGCAAGATTGCACACAGCAGTTTC-TGTTGGACTAGT 9295661 Query 110331 GTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATT 110390 ||| || | ||||| || || |||||||| ||| ||| ||||| || | |||||| Sbjct 9295660 GTACTCAATGATTTCAGTGCATAAGTTGGACGACTTTATGGTACCCAGATTTTGCTGATT 9295601 Query 110391 CGATTTGGAGTTGCATGCATCCTTATAG 110418 ||| |||||||| |||| ||||| Sbjct 9295600 ACTTTTTCGGTTGCATGAATCC-TATAG 9295574 >seq3 Length=23459830 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 119514 CCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTC 119573 ||||| || || ||||| | || || ||| | ||||||||||||||||| |||| Sbjct 9980359 CCTTCGTCACGTGAGATCAATTCGTTTGAGAATGTTAATCCAGGCATGAGTCCTCGTTTC 9980418 Query 119574 TTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACA 119626 || ||||| ||||| | |||||| ||||| || |||||||| || || ||||| Sbjct 9980419 TTCAGCCAGAAGATTGAACAAAAGCTTCCGGAGAAGAAGATACCTTCAACACA 9980471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975948464600