Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11]
7 sequences; 119,667,750 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq1 102 1e-16
seq2 98.7 1e-15
seq3 87.8 2e-12
>seq1
Length=30427671
Score = 102 bits (112), Expect = 1e-16
Identities = 297/452 (66%), Gaps = 18/452 (4%)
Strand=Plus/Plus
Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562
|| || ||||| ||||| | || | ||| |||||||| || | | ||| || ||
Sbjct 1961378 CGGTCAAAACGCCCTGGTCTTAGCAAAGCGGAGTCAAGAATGTCTGCTCTGTTGGTTGCA 1961437
Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622
|||| || | || ||||| | | || ||||| ||||| || || || ||||| ||
Sbjct 1961438 GCAACTACGATAACACCAGTGTTACCCTCAAAACCATCCATCTCAGTCAGGAGCTGATTA 1961497
Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAACG-CTT--CTTACCG 11679
| |||||||| | ||||| || | | |||| | | | | ||| | ||||
Sbjct 1961498 AGGGTCTGTTCTCTTTCATCATT--ACCTCC-ACCAATTCCAGTTCCTCTTTGCCTACCA 1961554
Query 11680 ACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAA 11739
||||| || || ||||| | ||| || || || || || | || | || ||||
Sbjct 1961555 ACAGCATCTATTTCATCCACGAAAACAATGCATGGAGCATTTTCTTTGGCTTTTTTGAAA 1961614
Query 11740 AGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGAA 11799
|| || || || | || |||||||| || ||||||||||| || | |||||
Sbjct 1961615 AGATCGCGGACCCTTGATGCACCAACACCGACAAACATCTCAACAAACT------CAGAA 1961668
Query 11800 CAC----TG--AATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTC 11853
| | || || |||||| ||| || |||||||| |||||| || | || ||
Sbjct 1961669 CCCGAGATGGAAAAGAAGGGCACACCAGCTTCACCAGCAATGGCTTTTGCCAACAGGGTT 1961728
Query 11854 TTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCA 11913
|| || |||||||| | |||| | ||||| | || |||||| ||||||| ||
Sbjct 1961729 TTCCCGGTACCAGGAGGACCAACAAGAAGAACACCTTTTGGGATCCGGGCACCAACCGCA 1961788
Query 11914 AAGTAGCGCTCAGGCTTCTTGAGGAAGTCCAC 11945
| | | |||||||||||| || || |||||
Sbjct 1961789 GTGAACCTCTCAGGCTTCTTCAGAAACTCCAC 1961820
>seq2
Length=19698289
Score = 98.7 bits (108), Expect = 1e-15
Identities = 298/451 (66%), Gaps = 16/451 (4%)
Strand=Plus/Minus
Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562
|| || || || ||||| | | | |||| |||||||| || | | || || ||
Sbjct 13175860 CGGTCAAACCGTCCTGGCCTCAACAAAGCAGAGTCAAGAATGTCTGCTCTATTGGTTGCA 13175801
Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622
|||| || | || ||||| | | || ||||| ||||| || || || ||||| |||
Sbjct 13175800 GCAACTACGATAACACCAGTGTTACCTTCAAAACCATCCATCTCAGTTAGGAGCTGATTG 13175741
Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACC--TGCCGAA--CGCTT--CTTA 11676
| |||||||| | ||||| || | | ||||| | ||| | ||| | ||
Sbjct 13175740 AGGGTCTGTTCTCTTTCATCATTA-----CCT-CCACCAATTCCGGTTCCTCTTTGCCTA 13175687
Query 11677 CCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGT-TC 11735
|| ||||| || || ||||| | || || || || || ||| | | || || | |
Sbjct 13175686 CCAACAGCATCTATTTCATCTACAAAGACAATGCAAGGAGCGTTCTC-CTTGGCTTTCTT 13175628
Query 11736 GAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGC 11795
|||||| ||||| || | | || |||||||| || ||||||||||| || | | |
Sbjct 13175627 GAAAAGATCACGGACTCTCGAGGCACCAACACCGACAAACATCTCAACAAACTCAGAACC 13175568
Query 11796 AGAACACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCT 11854
||| | || | ||| || ||| || |||||||| |||||| || | || || |
Sbjct 13175567 AGAG-ATGGAGAAGAAAGGCACACCAGCTTCACCAGCAATGGCTTTTGCCAAAAGGGTTT 13175509
Query 11855 TACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAA 11914
| || |||||||| | |||| ||||| | || ||||||||||||||| ||
Sbjct 13175508 TCCCGGTACCAGGAGGACCAATAAGAAGAACACCTTTCGGGATCTTGGCACCAACCGCAG 13175449
Query 11915 AGTAGCGCTCAGGCTTCTTGAGGAAGTCCAC 11945
| | | |||||| ||||| | || |||||
Sbjct 13175448 TGAATCTCTCAGGTTTCTTCAAAAACTCCAC 13175418
Score = 86.0 bits (94), Expect = 7e-12
Identities = 110/148 (74%), Gaps = 3/148 (2%)
Strand=Plus/Minus
Query 110272 ACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTC-GGT 110330
||| || |||| | ||||||||| |||||||||||||||| ||| || | || | | ||
Sbjct 9295719 ACAAATCTGGGTAAAGCAATAGATGCAAGATTGCACACAGCAGTTTC-TGTTGGACTAGT 9295661
Query 110331 GTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATT 110390
||| || | ||||| || || |||||||| ||| ||| ||||| || | ||||||
Sbjct 9295660 GTACTCAATGATTTCAGTGCATAAGTTGGACGACTTTATGGTACCCAGATTTTGCTGATT 9295601
Query 110391 CGATTTGGAGTTGCATGCATCCTTATAG 110418
||| |||||||| |||| |||||
Sbjct 9295600 ACTTTTTCGGTTGCATGAATCC-TATAG 9295574
>seq3
Length=23459830
Score = 87.8 bits (96), Expect = 2e-12
Identities = 87/113 (77%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 119514 CCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTC 119573
||||| || || ||||| | || || ||| | ||||||||||||||||| ||||
Sbjct 9980359 CCTTCGTCACGTGAGATCAATTCGTTTGAGAATGTTAATCCAGGCATGAGTCCTCGTTTC 9980418
Query 119574 TTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACA 119626
|| ||||| ||||| | |||||| ||||| || |||||||| || || |||||
Sbjct 9980419 TTCAGCCAGAAGATTGAACAAAAGCTTCCGGAGAAGAAGATACCTTCAACACA 9980471
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588975948464600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |