Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1 141 1e-28 seq5 114 2e-20 seq2 109 6e-19 >seq1 Length=30427671 Score = 141 bits (156), Expect = 1e-28 Identities = 302/447 (68%), Gaps = 8/447 (2%) Strand=Plus/Plus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 || ||||| || ||||| | || | ||| ||||| || || | | || || || Sbjct 1961378 CGGTCAAAACGCCCTGGTCTTAGCAAAGCGGAGTCAAGAATGTCTGCTCTGTTGGTTGCA 1961437 Query 9252 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 || | || | || ||| || | | ||||||||||||||||| |||| || || ||| Sbjct 1961438 GCAACTACGATAACACCAGTGTTACCCTCAAAACCATCCATCTCAGTCAGGAGCTGATTA 1961497 Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCC 9368 | || ||||| | ||||||||| || |||| |||| | | |||| | || Sbjct 1961498 AGGGTCTGTTCTCTTTCATCATTACCTCC---ACCAATTCCAGTTCCTCTTTGCCTACCA 1961554 Query 9369 ACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 9428 || ||||| || ||||| | ||| ||||| ||||| |||||| ||| ||| || Sbjct 1961555 ACAGCATCTATTTCATCCACGAAAACAATGCATGGAGCATTTTCTTTGGCTTTTTTGAAA 1961614 Query 9429 AGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9488 |||||||| |||||| || || ||||| ||||||||||| ||||| | | | | | Sbjct 1961615 AGATCGCGGACCCTTGATGCACCAACACCGACAAACATCTCAACAAACTCAGAACCCG-A 1961673 Query 9489 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9547 || | | |||||| ||| || |||||| ||||||||| || | || || || || Sbjct 1961674 GATGGAAAAGAAGGGCACACCAGCTTCACCAGCAATGGCTTTTGCCAACAGGGTTTTCCC 1961733 Query 9548 CGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCACTTCCAAAGTA 9607 ||||| || ||| | || || |||| ||| ||| ||| ||| || | | Sbjct 1961734 GGTACCAGGAGGACCAACAAGAAGAACACCTTTTGGGATCCGGGCACCAACCGCAGTGAA 1961793 Query 9608 TCTCTCAGGTTGCTTGAGAAAATCCAC 9634 |||||||| | ||| ||||| ||||| Sbjct 1961794 CCTCTCAGGCTTCTTCAGAAACTCCAC 1961820 Score = 114 bits (126), Expect = 2e-20 Identities = 196/280 (70%), Gaps = 6/280 (2%) Strand=Plus/Plus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 ||| ||||||||||||||||| || || |||||||| ||||| | |||||||| || Sbjct 18615746 AAATCCATCCATCTCTGTCAACAGCTGATTAATAGTCTGTTCTCTCTCATCATTTCCT-- 18615803 Query 9341 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398 | | ||| ||||| | | ||| | ||||| || ||||||||||||||||| |||||| Sbjct 18615804 CCTCCCATCCCAGCTCCTCTCTGCCTACCCACAGCGTCAATCTCATCAATGAATACAATA 18615863 Query 9399 CATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACC 9457 || || | ||| | || | || || | ||| | ||| || || |||||||| Sbjct 18615864 CAAGG-GGCTTTAGACTTAGCCTTCTCGAACAAATCCCTAACTCTCGATGCACCCACACC 18615922 Query 9458 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 9517 ||||| | ||| || || | | ||| | || || ||| || || || ||| || Sbjct 18615923 CACAAAAAGCTCTACGAACTCCGAGGCCGCGCAAGAGAAGAACGGCACTCCAGCTTCCCC 18615982 Query 9518 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGC 9557 || | || | || || || |||||||||||||| ||| Sbjct 18615983 AGCCACCGCCCTAGCCAGGAGTGTCTTACCCGTACCAGGC 18616022 >seq5 Length=26975502 Score = 114 bits (126), Expect = 2e-20 Identities = 196/282 (70%), Gaps = 12/282 (4%) Strand=Plus/Minus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 ||| ||||||||||| |||||||| || |||||||| ||||||| |||||||| | Sbjct 16903807 AAACCCATCCATCTCAGTCAAAAGCTGATTAATAGTCTGTTCCCTCTCATCATTTCC--A 16903750 Query 9341 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398 | ||| ||||| | | ||| | || || ||||||||||||||||| || |||||| Sbjct 16903749 CCACCCATCCCAGCTCCTCTTTGTCTACCAACAGCATCAATCTCATCAATAAACACAATA 16903690 Query 9399 CATGG----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCAC 9454 || || || |||| || | ||||| | ||| | ||| || || ||||| Sbjct 16903689 CAAGGAGCTTTCGATTTC----GCCTTCTCAAATAAATCCCTAACTCTAGAAGCACCCAC 16903634 Query 9455 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 9514 ||||||||| | ||| ||||| | | || | ||| | ||| || || || ||| Sbjct 16903633 ACCAACAAAAAGCTCAACAAACTCCGAAGCAGCACACGAAAAGAACGGCACTCCAGCTTC 16903574 Query 9515 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 || || | |||| || | ||| ||||| |||||||| || Sbjct 16903573 TCCAGCCACAGCTCTAGCCAAAAGCGTCTTCCCCGTACCCGG 16903532 Score = 86.0 bits (94), Expect = 7e-12 Identities = 137/196 (70%), Gaps = 3/196 (2%) Strand=Plus/Minus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 ||| ||||| || |||| ||||| | ||| ||||| || || || ||||| | ||| Sbjct 16408781 GTGAAGACCTTCGTCTCTCGAAATCAATTCGTTTGAAAAAGTGAGTCCAGGCATTAAACC 16408722 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 || ||||||||||| | || | || || ||||||||||| ||||| || || || Sbjct 16408721 TCGTTTCTTCAACCAGAATATCGAACAAAAGCTACCGGAGAAGAATATACCTTCAACGCA 16408662 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAACCATTTCATTGC 117464 |||||||| | | | ||| |||||| |||| | || | ||||||||| || Sbjct 16408661 AGCAAACGCTACGATTCTCTCAGCGAAGCTTTGAGA---TCCGTTGATCCATTTCATAGC 16408605 Query 117465 CCATTTCGCCTTCTTC 117480 ||||| || || ||| Sbjct 16408604 CCATTCTGCTTTTTTC 16408589 >seq2 Length=19698289 Score = 109 bits (120), Expect = 6e-19 Identities = 275/414 (66%), Gaps = 8/414 (2%) Strand=Plus/Minus Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9284 ||||| || || | | ||| || || || | || | || ||| || | | |||||| Sbjct 13175827 TCAAGAATGTCTGCTCTATTGGTTGCAGCAACTACGATAACACCAGTGTTACCTTCAAAA 13175768 Query 9285 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9344 ||||||||||| || | || || || | || ||||| | ||||||||| || | Sbjct 13175767 CCATCCATCTCAGTTAGGAGCTGATTGAGGGTCTGTTCTCTTTCATCATTACCTCC---A 13175711 Query 9345 CCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACAT 9401 ||| || | | | |||| | || || ||||| || ||||| | |||||||| || Sbjct 13175710 CCAATTCCGGTTCCTCTTTGCCTACCAACAGCATCTATTTCATCTACAAAGACAATGCAA 13175651 Query 9402 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACA 9461 || || || ||| | | || ||||| || || || ||| || ||||| ||| Sbjct 13175650 GGAGCGTTCTCCTTGGCTTTCTTGAAAAGATCACGGACTCTCGAGGCACCAACACCGACA 13175591 Query 9462 AACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGC 9520 |||||||| ||||| | | | || || | || ||| || ||| || |||||| || Sbjct 13175590 AACATCTCAACAAACTCAGAACCAGAG-ATGGAGAAGAAAGGCACACCAGCTTCACCAGC 13175532 Query 9521 AATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCG 9580 ||||||| || | ||| || || || ||||| || ||| || || |||| Sbjct 13175531 AATGGCTTTTGCCAAAAGGGTTTTCCCGGTACCAGGAGGACCAATAAGAAGAACACCTTT 13175472 Query 9581 TGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCAC 9634 || |||||||| ||| || | |||||||||||| ||| | ||| ||||| Sbjct 13175471 CGGGATCTTGGCACCAACCGCAGTGAATCTCTCAGGTTTCTTCAAAAACTCCAC 13175418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980748376680