Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq7 581 4e-161 seq2 286 4e-72 seq6 277 2e-69 >seq7 Length=154478 Score = 581 bits (644), Expect = 4e-161 Identities = 727/994 (73%), Gaps = 2/994 (0%) Strand=Plus/Minus Query 167863 TTCTGCGAGTGGGTAACATCAACTAACAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 167922 ||||| | ||| |||| ||| | ||||| || || | || ||||| || || || Sbjct 1396 TTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1337 Query 167923 ATGATTCCAACTCTGTTGGCAGCAACTATCTGTTTC-ATCGTCGCCTTCGTCGCTGCTCC 167981 ||||| || || | ||| | |||||| ||||||| || |||| ||| | |||||||| Sbjct 1336 ATGATCCCTACCTTATTGACCGCAACT-TCTGTTTTTATTATCGCATTCATTGCTGCTCC 1278 Query 167982 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 168041 || || || || || || || |||||||| || |||| || || | || || ||||| Sbjct 1277 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAA 1218 Query 168042 CATCATCTCTGGTGCAGTTGTCCCTTCTTCTAATGCTATTGGACTTCACTTCTATCCCAT 168101 || || || ||||| || | ||| ||||| ||||||||| | || || || || || Sbjct 1217 TATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATTGGATTGCATTTTTACCCAAT 1158 Query 168102 CTGGGAAGCAGCATCACTCGATGAGTGGTTGTATAACGGTGGTCCTTTCCAACTAGTAGT 168161 ||||||||| ||||| | ||||| ||| | || ||||| ||||||| ||||| | || Sbjct 1157 CTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGT 1098 Query 168162 CTTTCACTTCCTCATCGGTATCTATGCATACATGGGACGTGAATGGGAACTTTCATATCG 168221 | ||||| | | ||| | | || ||||| ||||| ||||||||| | || Sbjct 1097 TCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 1038 Query 168222 TTTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCAGCGAGTGC 168281 | | ||||||||||| ||||| ||||||||| || || || || || || |||| ||| Sbjct 1037 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGC 978 Query 168282 AGTATTCCTAGTGTATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAAT 168341 || ||| | | ||||| | ||||| || ||||| ||||||| ||||| || ||||| Sbjct 977 TGTTTTCTTGATCTATCCAATTGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 918 Query 168342 CTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATCC 168401 ||| || || ||||||| ||| | || ||||| ||||||||||| ||||| ||||| || Sbjct 917 CTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCC 858 Query 168402 CTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCACGG 168461 || || ||| | || || ||||| ||||| || ||| | |||||||||||||| || Sbjct 857 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTTTTTAGTGCTATGCATGG 798 Query 168462 AAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTACGG 168521 ||||| |||||| | | | || || || || |||| ||||| || | || Sbjct 797 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 738 Query 168522 TTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTCGG 168581 ||||| ||||| |||||||||||||| |||||||| ||||| ||||| ||||| || || Sbjct 737 TTACAGATTCGGGCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGG 678 Query 168582 TCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTTGC 168641 || ||||| |||||||| ||| |||||||| || || || || || |||||| | || Sbjct 677 CCGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGC 618 Query 168642 TGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCAA 168701 || ||||| || || || || ||||| || || | || | || ||||| ||||| Sbjct 617 GGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAA 558 Query 168702 CCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACAC 168761 ||| || |||||||| |||||||| || | ||||| |||| || ||||| | || || Sbjct 557 CCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATAC 498 Query 168762 CTGGGCAGATGTTCTGAACCGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGC 168821 ||||| ||| || | ||||| ||| || |||||||||||||||||||| ||||| || Sbjct 497 TTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 438 Query 168822 ACACAACTTCCCACTCGATCTTGCTGCTGCTGAG 168855 ||||||||||| || || || ||||||| |||| Sbjct 437 TCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 404 Score = 531 bits (588), Expect = 6e-146 Identities = 728/1016 (72%), Gaps = 6/1016 (1%) Strand=Plus/Plus Query 169307 TTCGATGTTCTCGATGACTGGCTCAAACGCGACCGCTTTGTATTCATTGGTTGGTCTGGT 169366 || ||| || | ||||||||| | | |||||||| || || | |||||||||||| Sbjct 32756 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 32815 Query 169367 CTACTTCTTCTTCCCACTGCCTATCTTGCTATTGGAGGGTGGCTCACTGGTACAGCGTTT 169426 ||| | || |||| ||||||| | ||| | || || ||| |||| |||||| | ||| Sbjct 32816 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 32875 Query 169427 GTTACTTCCTGGTACACCCACGGACTCGC---TTCCAGTTACTTAGAAGGCGCTAACTTC 169483 || ||||| ||||| || || ||| | || |||| || |||||||| || || Sbjct 32876 GTAACTTCATGGTATACTCATGGATTGGCCAGTTCC---TATTTAGAAGGTTGCAATTTT 32932 Query 169484 CTCACTGCTGCTGTCAGTACACCTGCTGACGCTATGGGACACTCACTGCTCTTGCTATGG 169543 | || ||||| || ||| |||||| | | | | || || || | || || ||| Sbjct 32933 TTAACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGG 32992 Query 169544 GGTCCAGAAGCACAAGGCGATTTCGTTCGCTGGTGTCAATTGGGTGGTCTCTGGAACTTT 169603 ||||| ||||||||||| ||||| ||| ||||||||||| |||||||| ||| ||| Sbjct 32993 GGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTATGGGCTTTT 33052 Query 169604 GTAGCACTTCATGGTGCATTTGCATTGATTGGTTTCATGCTTAGGCAGTTTGAATTGGCA 169663 || || || || || || || ||||| || ||||| ||| | | || |||||| | || Sbjct 33053 GTTGCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCT 33112 Query 169664 CGTCTTATTGGCATCCGTCCTTATAATGCTATTGCATTCTCTGGTCCTATTGCTGTATTT 169723 || | || | || ||||||||||| || |||||||||||||| |||||||| ||| Sbjct 33113 CGATCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCCATTGCTGTTTTT 33172 Query 169724 GTCAGTGTCTTTCTTATCTACCCACTTGGACAGTCCTCATGGTTCTTTGCTCCCTCCTTT 169783 || |||||| || || || ||||| || || || ||||||||||| || ||| Sbjct 33173 GTTTCTGTCTTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTT 33232 Query 169784 GGAGTATCAGCAATCTTCAGGTTCCTGTTGTTCCTGCAAGGATTCCACAACTGGACGTTG 169843 || ||| | || || || | ||| | | || | ||||| || || || ||||| ||| Sbjct 33233 GGTGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTG 33292 Query 169844 AATCCATTCCACATGATGGGTGTAGCAGGAATCTTGGGCGGAGCATTGCTTTCTGCTATC 169903 || ||||| || |||||||| || || || | |||||| || |||| | ||||| Sbjct 33293 AACCCATTTCATATGATGGGAGTCGCCGGTGTACTGGGCGCGGCTCTGCTATGCGCTATT 33352 Query 169904 CATGGTGTTACAGTAGAGAACACATTGTATGAAGACGGTGAGCAGGCAAATACTTTCAAG 169963 ||||||| ||| ||||| || || || | |||||| ||||| |||||||| ||| Sbjct 33353 CATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGT 33412 Query 169964 GCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGG 170023 || ||| | | || || | ||||| |||||||| |||||||| || |||||||| ||| Sbjct 33413 GCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGG 33472 Query 170024 TCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGTTGGCTTCATTTTTTCATGTTGTTT 170083 || || ||||| || |||| ||||| || || |||||| | ||||| || ||||| ||| Sbjct 33473 TCACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTT 33532 Query 170084 GTGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTCAATCTT 170143 || || || | ||| | |||| || |||| | | || | ||| | || || Sbjct 33533 GTACCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTTTAGCTTTGAACCTA 33592 Query 170144 CGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACC 170203 ||||| || || ||||| ||||| ||| | ||||| |||||||||||||||||||| Sbjct 33593 CGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCAGAATTTGAGACT 33652 Query 170204 TTCTACACCAAAAACATCCTATTGAATGAAGGACTTCGTGCATGGTTGGCACCTGCTGAT 170263 ||||| || ||||| || || || || ||||| ||||||| ||| |||| || ||| Sbjct 33653 TTCTATACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGAT 33712 Query 170264 CAACCACATGAAAACTTCATCTTCCCAGAAGAAGTTCTTCCGAGAGGTAACGCACT 170319 || || ||||||||| | || ||||| || || ||||| || | || ||||| || Sbjct 33713 CAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 33768 >seq2 Length=19698289 Score = 286 bits (316), Expect = 4e-72 Identities = 357/489 (73%), Gaps = 14/489 (3%) Strand=Plus/Minus Query 168370 TTCCAAGCTGAGCACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCTGGGGTA 168429 ||||| ||||||||||| ||||| ||||| || || || ||| | || || ||||| ||| Sbjct 3332065 TTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 3332006 Query 168430 TTTGGTGGCAGTTTGTTTAGTGCTATGCACGGAAGTT---TGGTTACTTCTTCTCTCGTT 168486 || || ||| | ||||||||||| || || ||| |||| |||||| | | | Sbjct 3332005 TTCGGCGGCTCCCTATTTAGTGCTATACATGG--GTTCCTTGGTAACTTCTAGTTTGATC 3331948 Query 168487 AGAGAGACGACTGAAACCGAATCCCAAAACTACGGTTACAAGTTCGGACAAGAAGAAGAA 168546 || || || | |||| ||||| || | ||||||| ||||| ||||||||| || Sbjct 3331947 AGGGAAACCATAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAATAA 3331888 Query 168547 ACATACAACATCGTAGCCGCTCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCA 168606 || |||||||| ||||| ||||||||||| || || || |||||||||| | Sbjct 3331887 ACTTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCGTT-------- 3331836 Query 168607 TTCAACAACTCCCGCTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGG 168666 ||||||| || || || || || |||||| | || || ||||| || || || || ||| Sbjct 3331835 -TCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGG 3331777 Query 168667 TTCACCGCCCTTGGCGTCTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAG 168726 || || || | || | ||| ||||| |||||||| || ||||| || |||||||| Sbjct 3331776 TTTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTAAATTTCAACCAA 3331717 Query 168727 TCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTTCTGAACCGCGCT 168786 || | ||||| |||| || ||||| | || || ||||| ||| || | ||||| ||| Sbjct 3331716 TCAGTAGTTGATAGTCAAGGGCGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCT 3331657 Query 168787 GGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGATCTTGCT 168846 | ||||| |||||||||||||| ||||| || ||||||||||| || || || ||| Sbjct 3331656 AACTTTGGTATAGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCT 3331597 Query 168847 GCTGCTGAG 168855 |||| |||| Sbjct 3331596 GCTGTTGAG 3331588 Score = 82.4 bits (90), Expect = 9e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 170123 ATTGGCCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCA 170182 || || || ||||| || || ||||| || || ||||| ||||| ||| | |||| Sbjct 3492728 ATCGGTCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTACAGCG 3492669 Query 170183 GAAGATCCAGAATTTGAGACCTTCTACACCAAAAA 170217 |||||||| ||||||||||| |||||||||||||| Sbjct 3492668 GAAGATCCTGAATTTGAGACTTTCTACACCAAAAA 3492634 >seq6 Length=366924 Score = 277 bits (306), Expect = 2e-69 Identities = 355/489 (73%), Gaps = 14/489 (3%) Strand=Plus/Plus Query 168370 TTCCAAGCTGAGCACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCTGGGGTA 168429 ||||| ||||||||| ||||| ||||| || || || ||| | || || ||||| ||| Sbjct 334345 TTCCAGGCTGAGCACTTCATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 334404 Query 168430 TTTGGTGGCAGTTTGTTTAGTGCTATGCACGGAAGTT---TGGTTACTTCTTCTCTCGTT 168486 || || ||| | ||||||||||| || || ||| |||| |||||| | | | Sbjct 334405 TTCGGCGGCTCCCTATTTAGTGCTATACATGG--GTTCCTTGGTAACTTCTAGTTTGATC 334462 Query 168487 AGAGAGACGACTGAAACCGAATCCCAAAACTACGGTTACAAGTTCGGACAAGAAGAAGAA 168546 || || || | |||| ||||| || | ||||||| ||||| ||||||||| || Sbjct 334463 AGGGAAACCATAGAAAATGAATCTGCTAATCAAGGTTACAGATTCGGTCAAGAAGAATAA 334522 Query 168547 ACATACAACATCGTAGCCGCTCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCA 168606 || |||||||| ||||| ||||||||||| || || || |||||||||| | Sbjct 334523 ACTTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCGTT-------- 334574 Query 168607 TTCAACAACTCCCGCTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGG 168666 ||||||| || || || || || |||||| | || || ||||| || || || || ||| Sbjct 334575 -TCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGG 334633 Query 168667 TTCACCGCCCTTGGCGTCTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAG 168726 || || || | || | ||| ||||| |||||||| || ||||| || |||||||| Sbjct 334634 TTTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTAAATTTCAACCAA 334693 Query 168727 TCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTTCTGAACCGCGCT 168786 || | ||||| |||| || ||||| | || || ||||| ||| || | ||||| ||| Sbjct 334694 TCAGTAGTTGATAGTCAAGGGCGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCT 334753 Query 168787 GGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGATCTTGCT 168846 | ||||| |||||||||||||| ||||| || ||||||||||| || || || ||| Sbjct 334754 AACTTTGGTATAGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCT 334813 Query 168847 GCTGCTGAG 168855 |||| |||| Sbjct 334814 GCTGTTGAG 334822 Score = 82.4 bits (90), Expect = 9e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 170123 ATTGGCCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCA 170182 || || || ||||| || || ||||| || || ||||| ||||| ||| | |||| Sbjct 102176 ATCGGTCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTACAGCG 102117 Query 170183 GAAGATCCAGAATTTGAGACCTTCTACACCAAAAA 170217 |||||||| ||||||||||| |||||||||||||| Sbjct 102116 GAAGATCCTGAATTTGAGACTTTCTACACCAAAAA 102082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574473549733560