Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11]
7 sequences; 119,667,750 total letters
Query= NC_015282.1
Length=174079
Score E
Sequences producing significant alignments: (Bits) Value
seq7 654 0.0
seq2 311 1e-79
seq6 302 5e-77
>seq7
Length=154478
Score = 654 bits (724), Expect = 0.0
Identities = 745/995 (75%), Gaps = 4/995 (0%)
Strand=Plus/Minus
Query 163785 TTCTGCGAATGGGTGACTTCCACAAACAACCGCCTCTATGTTGGTTGGTTCGGCGTTCTG 163844
||||| | ||| | ||| ||| | ||||| || || |||| ||||| || ||| ||
Sbjct 1396 TTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1337
Query 163845 ATGATCCCTACGCTGCTTG-CAGCAACCATCTGTTTC-ATCGTCGCCTTCGTCGCTGCTC 163902
||||||||||| || ||| | ||||| ||||||| || |||| ||| | |||||||
Sbjct 1336 ATGATCCCTAC-CTTATTGACCGCAACT-TCTGTTTTTATTATCGCATTCATTGCTGCTC 1279
Query 163903 CCCCTGTGGACATCGATGGTATTCGTGAACCTGTTGCAGGTTCGCTCATGTATGGTAACA 163962
| || || || || ||||||||||||||||||||| | || || || | || || ||||
Sbjct 1278 CTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACA 1219
Query 163963 ACATCATCTCTGGTGCAGTTGTTCCCTCGTCCAATGCAATTGGTCTTCACTTCTACCCCA 164022
| || || || ||||| || |||| | || || ||||| | || || ||||| |
Sbjct 1218 ATATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATTGGATTGCATTTTTACCCAA 1159
Query 164023 TTTGGGAAGCCGCATCCCTTGATGAATGGCTTTACAACGGTGGTCCTTTCCAACTTGTCG 164082
| |||||||| |||||| ||||||||||||| |||||||| ||||||| |||| | |
Sbjct 1158 TCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTG 1099
Query 164083 TCTTCCACTTCCTGATCGGTATCTATGCATACATGGGTCGTGAGTGGGAACTGTCTTACC 164142
| | ||||| | | ||| | | || |||||||||||||||||||| || ||
Sbjct 1098 TTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCC 1039
Query 164143 GTCTTGGTATGCGTCCTTGGATTTGTGTTGCTTACTCTGCACCCGTTGCAGCAGCATCCG 164202
|||| |||||||||||||||||| |||||| || || || || |||||||| || | |
Sbjct 1038 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTG 979
Query 164203 CAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCGTTCTCTGACGCAATGCCCCTGGGCA 164262
| || ||| || ||||||| | ||||| || || ||||| | ||||| || || |
Sbjct 978 CTGTTTTCTTGATCTATCCAATTGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 919
Query 164263 TCTCTGGCACCTTCAACTACATGTTGGTGTTCCAAGCAGAGCACAACATCCTGATGCACC 164322
||||||| || ||||||| ||| | || ||||| || ||||||||||| || |||||||
Sbjct 918 TCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACC 859
Query 164323 CCTTCCATATGCTCGGCGTTGCTGGCGTATTTGGCGGTTCTCTGTTCAGTGCAATGCACG 164382
| || || ||| | || || ||||| ||||| ||||| || || || ||||| ||||| |
Sbjct 858 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTTTTTAGTGCTATGCATG 799
Query 164383 GTTCTCTGGTTACTTCTTCGCTGGTTCGTGAAACCACCGAAACTGAGTCCCAGAACTATG 164442
|||| |||| |||||| || | | |||||||| |||| ||| || || | |
Sbjct 798 GTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 739
Query 164443 GTTACAAGTTTGGTCAAGAAGAAGAAACATACAACATTGTTGCCGCTCACGGTTACTTTG 164502
|||||| || || |||||||||||||| ||||||||||| || ||||||||||| ||||
Sbjct 738 GTTACAGATTCGGGCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTG 679
Query 164503 GTCGTCTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTG 164562
| || |||| |||||||| ||| |||||||| || ||||| || || |||||| | |
Sbjct 678 GCCGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAG 619
Query 164563 CTGCATGGCCTGTTGTTGGCATCTGGTTCACCGCACTTGGTGTTTCCACGATGGCATTCA 164622
| || ||||| || || || || ||||| || || | ||| || || ||||| ||||
Sbjct 618 CGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCA 559
Query 164623 ACCTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACA 164682
|||| || |||||||| |||||||| || | | ||| |||| || ||||| | || |
Sbjct 558 ACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATA 499
Query 164683 CTTGGGCAGACGTTCTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAACG 164742
||||||| || || | ||||| ||| || ||||||||||||||||| || ||||| |
Sbjct 498 CTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 439
Query 164743 CTCACAACTTCCCTCTGGATCTCGCTGCTGCTGAG 164777
|||||||||||||||| || || ||||||| ||||
Sbjct 438 CTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 404
Score = 592 bits (656), Expect = 2e-164
Identities = 734/1002 (73%), Gaps = 2/1002 (0%)
Strand=Plus/Plus
Query 165206 GATGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTT 165265
||||||||| | | || || ||||||||||| ||||||||||| || | || |||
Sbjct 32768 GATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTT 32827
Query 165266 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTCGCGACGAGTTGG 165325
|| ||| ||| | ||| | || |||||| | || || || || || | || |||
Sbjct 32828 CCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGG 32887
Query 165326 TATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGTGCAAACTTTCTTACTGCGGCAGTT 165385
|||||||| || ||||| ||||||||| | || ||| || ||| | || || ||||||
Sbjct 32888 TATACTCATGGATTGGCCAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAGTT 32947
Query 165386 TCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCTCAA 165445
|||||||| || | | | | |||||| | || | || ||||||||||| || |||
Sbjct 32948 TCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAA 33007
Query 165446 GGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGG 165505
|| ||||| | ||| ||| | || || || ||||||||||| || ||||||||
Sbjct 33008 GGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTATGGGCTTTTGTTGCTCTCCACGGC 33067
Query 165506 GCTTTCGCTCTAATTGGTTTCATGCTTCGTCAGTTTGAATTAGCACG-TCTCATCGGTAT 165564
|||||||| |||| ||||| ||| | ||||| |||||| | || || ||| || | |
Sbjct 33068 GCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT-T 33126
Query 165565 CCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCT 165624
|| || || ||||| || || ||||||||||| || |||||||||||| ||||| ||
Sbjct 33127 GCGACCTTATAATGCAATCGCATTCTCTGGTCCCATTGCTGTTTTTGTTTCTGTCTTCCT 33186
Query 165625 CATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCGCAGCAAT 165684
|| || || || |||||||| ||||||| || || || ||| || || || || ||
Sbjct 33187 AATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTAT 33246
Query 165685 CTTCAGGTTCCTTCTCTTCCTACAAGGATTCCATAACTGGACCTTGAATCCCTTTCATAT 165744
|| | ||| | ||||| | ||||| || ||||| ||||| ||||| || ||||||||
Sbjct 33247 ATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATAT 33306
Query 165745 GATGGGTGTTGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAGT 165804
|||||| || || ||| | ||||| | || |||| | || || ||||||| ||| ||
Sbjct 33307 GATGGGAGTCGCCGGTGTACTGGGCGCGGCTCTGCTATGCGCTATTCATGGTGCTACTGT 33366
Query 165805 AGAGAATACTCTGTATCAAGATGGTGACGATGCAAATACTTTCAAGGCATTTGACTCTAC 165864
||| |||||| | | | |||||||||| | ||||||||| ||| || ||| || | ||
Sbjct 33367 AGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAAC 33426
Query 165865 TCAAGAGGAAGAAACCTACTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTCGG 165924
||||| |||||||| || |||||||| || || ||||| || ||||| || ||||| ||
Sbjct 33427 TCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGG 33486
Query 165925 TATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGG 165984
|||| ||| ||||| | ||||| |||||||||||| | ||||| || || | ||
Sbjct 33487 GGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCGGTAACTGG 33546
Query 165985 TCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTT 166044
| | |||| ||| | | || | | ||| | ||| | ||||| ||||| ||||||||
Sbjct 33547 TTTATGGATGAGTGCTCTTGGAGTAGTCGGTTTAGCTTTGAACCTACGTGCCTATGACTT 33606
Query 166045 TGTATCCCAAGAGATCAGAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACGAAAAA 166104
|| ||||| || ||| | ||||| ||||| ||||| ||||| || ||||| || |||||
Sbjct 33607 CGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCAGAATTTGAGACTTTCTATACTAAAAA 33666
Query 166105 CATTCTCTTGAATGAAGGTCTTCGTGCTTGGTTGGCACCAGTCGATCAACCGCATGAGAA 166164
||||| || || |||||| ||||||||||| |||| | ||||| || ||||| ||
Sbjct 33667 TATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAA 33726
Query 166165 CTTTGTCTTCCCTGAAGAAGTTCTGCCTAGGGGTAACGCGCT 166206
| || | |||||||| || ||||| || | || ||||| ||
Sbjct 33727 CCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 33768
>seq2
Length=19698289
Score = 311 bits (344), Expect = 1e-79
Identities = 361/487 (74%), Gaps = 10/487 (2%)
Strand=Plus/Minus
Query 164292 TTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCTGGCGTA 164351
||||| || ||||||||||| || |||||||| || || ||| | || || ||||| |||
Sbjct 3332065 TTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 3332006
Query 164352 TTTGGCGGTTCTCTGTTCAGTGCAATGCACGG-TTCTCTGGTTACTTCTTCGCTGGTTCG 164410
|| ||||| || || || ||||| || || || ||| |||| |||||| || | |
Sbjct 3332005 TTCGGCGGCTCCCTATTTAGTGCTATACATGGGTTCCTTGGTAACTTCTAGTTTGATCAG 3331946
Query 164411 TGAAACCACCGAAACTGAGTCCCAGAACTATGGTTACAAGTTTGGTCAAGAAGAAGAAAC 164470
||||||| |||| ||| || || | ||||||| || |||||||||||| ||||
Sbjct 3331945 GGAAACCATAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAATAAAC 3331886
Query 164471 ATACAACATTGTTGCCGCTCACGGTTACTTTGGTCGTCTGATCTTCCAATACGCTTCATT 164530
||||||||||| || ||||| ||||| ||||| || ||||||||| | |
Sbjct 3331885 TTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCGTT---------T 3331835
Query 164531 CAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTTGGCATCTGGTT 164590
|||||| || ||||| || || |||||| | || || ||||| || || || || |||||
Sbjct 3331834 CAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTT 3331775
Query 164591 CACCGCACTTGGTGTTTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTC 164650
|| || | ||| || ||| ||||| |||||||| || ||||| || |||||||| ||
Sbjct 3331774 TACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTAAATTTCAACCAATC 3331715
Query 164651 CATCATCGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGACGTTCTCAACCGCGCTGG 164710
| | ||| |||| || ||||| | || |||||||| || || | ||||| |||
Sbjct 3331714 AGTAGTTGATAGTCAAGGGCGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAA 3331655
Query 164711 TCTGGGTATGGAAGTTATGCACGAGCGTAACGCTCACAACTTCCCTCTGGATCTCGCTGC 164770
| ||||| ||||||||||| || ||||| ||||||||||||||||| || || |||||
Sbjct 3331654 CTTTGGTATAGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGC 3331595
Query 164771 TGCTGAG 164777
|| ||||
Sbjct 3331594 TGTTGAG 3331588
>seq6
Length=366924
Score = 302 bits (334), Expect = 5e-77
Identities = 359/487 (74%), Gaps = 10/487 (2%)
Strand=Plus/Plus
Query 164292 TTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCTGGCGTA 164351
||||| || |||||| ||| || |||||||| || || ||| | || || ||||| |||
Sbjct 334345 TTCCAGGCTGAGCACTTCATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 334404
Query 164352 TTTGGCGGTTCTCTGTTCAGTGCAATGCACGG-TTCTCTGGTTACTTCTTCGCTGGTTCG 164410
|| ||||| || || || ||||| || || || ||| |||| |||||| || | |
Sbjct 334405 TTCGGCGGCTCCCTATTTAGTGCTATACATGGGTTCCTTGGTAACTTCTAGTTTGATCAG 334464
Query 164411 TGAAACCACCGAAACTGAGTCCCAGAACTATGGTTACAAGTTTGGTCAAGAAGAAGAAAC 164470
||||||| |||| ||| || || | ||||||| || |||||||||||| ||||
Sbjct 334465 GGAAACCATAGAAAATGAATCTGCTAATCAAGGTTACAGATTCGGTCAAGAAGAATAAAC 334524
Query 164471 ATACAACATTGTTGCCGCTCACGGTTACTTTGGTCGTCTGATCTTCCAATACGCTTCATT 164530
||||||||||| || ||||| ||||| ||||| || ||||||||| | |
Sbjct 334525 TTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCGTT---------T 334575
Query 164531 CAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTTGGCATCTGGTT 164590
|||||| || ||||| || || |||||| | || || ||||| || || || || |||||
Sbjct 334576 CAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTT 334635
Query 164591 CACCGCACTTGGTGTTTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTC 164650
|| || | ||| || ||| ||||| |||||||| || ||||| || |||||||| ||
Sbjct 334636 TACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTAAATTTCAACCAATC 334695
Query 164651 CATCATCGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGACGTTCTCAACCGCGCTGG 164710
| | ||| |||| || ||||| | || |||||||| || || | ||||| |||
Sbjct 334696 AGTAGTTGATAGTCAAGGGCGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAA 334755
Query 164711 TCTGGGTATGGAAGTTATGCACGAGCGTAACGCTCACAACTTCCCTCTGGATCTCGCTGC 164770
| ||||| ||||||||||| || ||||| ||||||||||||||||| || || |||||
Sbjct 334756 CTTTGGTATAGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGC 334815
Query 164771 TGCTGAG 164777
|| ||||
Sbjct 334816 TGTTGAG 334822
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556924751269080
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