Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11]
7 sequences; 119,667,750 total letters
Query= NC_015283.1
Length=176428
Score E
Sequences producing significant alignments: (Bits) Value
seq7 540 1e-148
seq2 266 4e-66
seq6 257 2e-63
>seq7
Length=154478
Score = 540 bits (598), Expect = 1e-148
Identities = 719/999 (72%), Gaps = 0/999 (0%)
Strand=Plus/Minus
Query 168491 TTCTGCGAATGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTA 168550
||||| | ||| |||| |||||| | ||| | ||||| |||| ||||| ||||| ||
Sbjct 1396 TTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1337
Query 168551 ATGATCCCATGTTTATTAACAGCAGCAGCATGTTTCATTGTTGCATTTATTGCTGCACCA 168610
|||||||| ||||| || ||| | | ||| ||| | ||||| |||||||| ||
Sbjct 1336 ATGATCCCTACCTTATTGACCGCAACTTCTGTTTTTATTATCGCATTCATTGCTGCTCCT 1277
Query 168611 CCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAAC 168670
|| || ||||| || || || | |||||||| | || |||| | || ||||||||
Sbjct 1276 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 1217
Query 168671 ATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAATT 168730
|| || || ||||| || |||| |||| || || || | || || ||||||||
Sbjct 1216 ATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATTGGATTGCATTTTTACCCAATC 1157
Query 168731 TGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAATC 168790
|||||||| || | | ||||| ||| |||| || || |||||||| | | | |
Sbjct 1156 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGTT 1097
Query 168791 TTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAATTATCATACAGA 168850
| ||||| || | || | || || |||||| | |||||||| | | | |
Sbjct 1096 CTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 1037
Query 168851 CTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGCA 168910
|| |||||| | |||||||| |||||| |||||||| || || | || || |||
Sbjct 1036 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGCT 977
Query 168911 GTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAATT 168970
|| ||| | | || ||| |||||||||| ||| |||||||||||||||||||||||
Sbjct 976 GTTTTCTTGATCTATCCAATTGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATC 917
Query 168971 TCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCCC 169030
||||| || |||||||| ||| | |||||||| || |||||||||||||||||||| ||
Sbjct 916 TCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCA 857
Query 169031 TTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGGT 169090
|| || ||| ||| ||||| ||| | ||||| || || || || || |||||||||
Sbjct 856 TTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTTTTTAGTGCTATGCATGGT 797
Query 169091 TCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGGT 169150
|| | ||||| ||| | | ||||| || || || || | |||||| || | |||
Sbjct 796 TCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGT 737
Query 169151 TACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGGT 169210
|||| ||||| |||||||||||||| || || ||||| || || || || || || ||
Sbjct 736 TACAGATTCGGGCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGC 677
Query 169211 AGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCA 169270
|||| || ||||| ||||| ||||||||||| || | | | || |||||| ||||
Sbjct 676 CGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCG 617
Query 169271 GTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAAC 169330
| | || || ||| || | ||||| || || | ||||| |||| ||||| ||||||
Sbjct 616 GCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAAC 557
Query 169331 TTGAACGGATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGTAAGATCATTCCTACA 169390
| || || || || || ||||||||||| || ||| | | || | ||| |||
Sbjct 556 CTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACT 497
Query 169391 TGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGCT 169450
|||| ||| | ||||| | || ||||||||||||||||| |||||||| ||||| |||
Sbjct 496 TGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 437
Query 169451 CACAACTTCCCACTAGACTTAGCATCTGCTGAGACTACA 169489
||||||||||| |||||| |||| ||| |||| || ||
Sbjct 436 CACAACTTCCCTCTAGACCTAGCTGCTGTTGAGGCTCCA 398
>seq2
Length=19698289
Score = 266 bits (294), Expect = 4e-66
Identities = 358/496 (72%), Gaps = 12/496 (2%)
Strand=Plus/Minus
Query 168996 TATTCCAAGCAGAGCACAACATTCTTATGCATCCCTTCCATATGGCAGGAGTAGCAGGTA 169055
||||||| || |||||||||||||||||||| || || || ||| ||| ||||| |||
Sbjct 3332067 TATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTG 3332008
Query 169056 TGTTCGGTGGATCTCTATTCTCCGCAATGCATGGTTCACTTG-TAACATCTTCTCTAATC 169114
| ||||| || || ||||| || || ||||| | |||| |||| ||| | | |||
Sbjct 3332007 TATTCGGCGGCTCCCTATTTAGTGCTATACATGGGTTCCTTGGTAACTTCTAGTTTGATC 3331948
Query 169115 AGAGAGACTACTGAGGAAGAATCTCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAA 169174
|| || || | || | |||||| || | ||||||| ||||||||||||||| ||
Sbjct 3331947 AGGGAAACCATAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAATAA 3331888
Query 169175 ACCTATAATATTGTTGCAGCACATGGATACTTCGGTAGATTAATCTTCCAGTATGCAAGT 169234
|| || || ||||| || || ||||| || || || |||| ||||||| ||
Sbjct 3331887 ACTTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCC---------GT 3331837
Query 169235 TTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCAGTGTTCCCAGTTGTATGTGTATGG 169294
|||||||| || | | | || |||||| |||| | | || || ||| || | |||
Sbjct 3331836 TTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGG 3331777
Query 169295 TTAACCTCTATGGGTATCTGTACAATGGCATTCAACTTGAACGGATTTAACTTTAACCAA 169354
|| || || | ||||| | || ||||| |||||| | || || || || || ||||||
Sbjct 3331776 TTTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTAAATTTCAACCAA 3331717
Query 169355 TCAGTTGTAGAT-GTTAACGGTAAGATCATTCCTACATGGGGTGACGTACTTAACAGAGC 169413
||||| || ||| || || || | | ||| ||| |||| ||| | ||||| | ||
Sbjct 3331716 TCAGTAGTTGATAGTCAAGGGCGTGTT-ATTAATACTTGGGCTGATATTATTAACCGTGC 3331658
Query 169414 AAACCTTGGTATGGAAGTAATGCATGAGCGTAACGCTCACAACTTCCCACTAGACTTAGC 169473
||| ||||||| ||||| |||||||| ||||| |||||||||||||| |||||| ||||
Sbjct 3331657 TAACTTTGGTATAGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 3331598
Query 169474 ATCTGCTGAGACTACA 169489
||| |||| || ||
Sbjct 3331597 TGCTGTTGAGGCTCCA 3331582
>seq6
Length=366924
Score = 257 bits (284), Expect = 2e-63
Identities = 356/496 (72%), Gaps = 12/496 (2%)
Strand=Plus/Plus
Query 168996 TATTCCAAGCAGAGCACAACATTCTTATGCATCCCTTCCATATGGCAGGAGTAGCAGGTA 169055
||||||| || |||||| |||||||||||| || || || ||| ||| ||||| |||
Sbjct 334343 TATTCCAGGCTGAGCACTTCATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTG 334402
Query 169056 TGTTCGGTGGATCTCTATTCTCCGCAATGCATGGTTCACTTG-TAACATCTTCTCTAATC 169114
| ||||| || || ||||| || || ||||| | |||| |||| ||| | | |||
Sbjct 334403 TATTCGGCGGCTCCCTATTTAGTGCTATACATGGGTTCCTTGGTAACTTCTAGTTTGATC 334462
Query 169115 AGAGAGACTACTGAGGAAGAATCTCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAA 169174
|| || || | || | |||||| || | ||||||| ||||||||||||||| ||
Sbjct 334463 AGGGAAACCATAGAAAATGAATCTGCTAATCAAGGTTACAGATTCGGTCAAGAAGAATAA 334522
Query 169175 ACCTATAATATTGTTGCAGCACATGGATACTTCGGTAGATTAATCTTCCAGTATGCAAGT 169234
|| || || ||||| || || ||||| || || || |||| ||||||| ||
Sbjct 334523 ACTTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCC---------GT 334573
Query 169235 TTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCAGTGTTCCCAGTTGTATGTGTATGG 169294
|||||||| || | | | || |||||| |||| | | || || ||| || | |||
Sbjct 334574 TTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGG 334633
Query 169295 TTAACCTCTATGGGTATCTGTACAATGGCATTCAACTTGAACGGATTTAACTTTAACCAA 169354
|| || || | ||||| | || ||||| |||||| | || || || || || ||||||
Sbjct 334634 TTTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTAAATTTCAACCAA 334693
Query 169355 TCAGTTGTAGAT-GTTAACGGTAAGATCATTCCTACATGGGGTGACGTACTTAACAGAGC 169413
||||| || ||| || || || | | ||| ||| |||| ||| | ||||| | ||
Sbjct 334694 TCAGTAGTTGATAGTCAAGGGCGTG-TTATTAATACTTGGGCTGATATTATTAACCGTGC 334752
Query 169414 AAACCTTGGTATGGAAGTAATGCATGAGCGTAACGCTCACAACTTCCCACTAGACTTAGC 169473
||| ||||||| ||||| |||||||| ||||| |||||||||||||| |||||| ||||
Sbjct 334753 TAACTTTGGTATAGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 334812
Query 169474 ATCTGCTGAGACTACA 169489
||| |||| || ||
Sbjct 334813 TGCTGTTGAGGCTCCA 334828
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 564441550611360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |