Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11]
7 sequences; 119,667,750 total letters
Query= NC_015287.1
Length=232878
Score E
Sequences producing significant alignments: (Bits) Value
seq7 536 2e-147
seq2 250 4e-61
seq6 241 2e-58
>seq7
Length=154478
Score = 536 bits (594), Expect = 2e-147
Identities = 714/992 (72%), Gaps = 0/992 (0%)
Strand=Plus/Minus
Query 215294 TTTTGTGAGTGGGTTACTTCTACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTC 215353
|| ||| | ||| | ||| ||||| || ||| | ||| |||| ||||||||||| |
Sbjct 1396 TTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1337
Query 215354 ATGATTCCTTGCCTCCTCGCAGCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCT 215413
||||| ||| | | | | || || || ||| || | |||||||| ||||| |||
Sbjct 1336 ATGATCCCTACCTTATTGACCGCAACTTCTGTTTTTATTATCGCATTCATTGCTGCTCCT 1277
Query 215414 CCTGTCGATATCGACGGAATCAGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAAC 215473
|| || ||||| || || || | || || ||| |||| ||| | | || || |||||
Sbjct 1276 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 1217
Query 215474 ATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATC 215533
|| || || ||||| || | |||| ||| || || ||||| || || ||||| |||
Sbjct 1216 ATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATTGGATTGCATTTTTACCCAATC 1157
Query 215534 TGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATC 215593
|||||||| ||| | ||||| |||||||| ||||| || || |||| |||| || |
Sbjct 1156 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGTT 1097
Query 215594 TTCCACTTCCTCATTGGTATTTCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGA 215653
| ||||| | ||||| | || || || | ||||||||||| || | |
Sbjct 1096 CTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 1037
Query 215654 TTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCA 215713
| |||||| | |||||||| |||||| || || || ||||| | ||||| |||
Sbjct 1036 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGCT 977
Query 215714 GTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATC 215773
|| ||| | | |||||| | |||||||| ||| ||||||| |||||| || ||||||
Sbjct 976 GTTTTCTTGATCTATCCAATTGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATC 917
Query 215774 TCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCA 215833
||||| || ||||||| ||| |||| ||||||||||||||||||||||| |||||||||
Sbjct 916 TCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCA 857
Query 215834 TTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGT 215893
|| |||||||||||||| |||||||| ||||| || || | || ||| ||||| |||
Sbjct 856 TTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTTTTTAGTGCTATGCATGGT 797
Query 215894 TCACTTGTTACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGT 215953
|| | || || ||| | | ||||| || || || || | |||||| || | |||
Sbjct 796 TCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGT 737
Query 215954 TACAAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTTGGT 216013
|||| ||||| ||||| || ||||| |||||||| |||||||| |||||||| |||||
Sbjct 736 TACAGATTCGGGCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGC 677
Query 216014 CGCCTCATCTTCCAATACGCATCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCA 216073
|| | || |||||||| || ||||||||| || | | | || |||||| | ||
Sbjct 676 CGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCG 617
Query 216074 GCATTCCCTGTTATTTGTATCTGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAAC 216133
|| | || || | |||| ||| ||||| | ||| | |||||||| ||||||
Sbjct 616 GCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAAC 557
Query 216134 CTTAACGGTTTCAACTTCAACCAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACT 216193
|| || |||||||| |||||||| || || || || || |||||| ||||
Sbjct 556 CTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACT 497
Query 216194 TGGGCAGACGTTCTTAACAGAGCAGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCT 216253
||||| || || ||||| | || |||||||||||||| ||||| || ||||| |||
Sbjct 496 TGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 437
Query 216254 CACAACTTCCCATTAGACTTGGCTGCTGCTGA 216285
||||||||||| ||||| | ||||||| |||
Sbjct 436 CACAACTTCCCTCTAGACCTAGCTGCTGTTGA 405
>seq2
Length=19698289
Score = 250 bits (276), Expect = 4e-61
Identities = 347/486 (71%), Gaps = 10/486 (2%)
Strand=Plus/Minus
Query 215801 TTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGGTGTC 215860
||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||
Sbjct 3332065 TTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 3332006
Query 215861 TTCGGTGGTTCATTGTTCTCTGCAATGCA-CGGTTCACTTGTTACATCTTCTCTAATCAG 215919
||||| || || | || ||| || || ||||| | || || ||| | | |||||
Sbjct 3332005 TTCGGCGGCTCCCTATTTAGTGCTATACATGGGTTCCTTGGTAACTTCTAGTTTGATCAG 3331946
Query 215920 AGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGAGGAAAC 215979
|| || | || | |||||| || | ||||||| ||||| ||||| || ||||
Sbjct 3331945 GGAAACCATAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAATAAAC 3331886
Query 215980 ATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGCATCTTT 216039
|||||||| |||||||| || ||||| ||||| || | ||||||| |||
Sbjct 3331885 TTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCC---------GTTT 3331835
Query 216040 CAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGTATCTGGGC 216099
|||||| || | | | || |||||| | || || | || || | |||| |||
Sbjct 3331834 CAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTT 3331775
Query 216100 AACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTTCAACCAGTC 216159
||||| | ||| | |||||||| |||||||| || ||||| || |||||||| ||
Sbjct 3331774 TACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTAAATTTCAACCAATC 3331715
Query 216160 TGTCGTAGACGCATCTGGTAAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGAGCAGG 216219
|| || || || |||||| ||||||||| || || ||||| | ||
Sbjct 3331714 AGTAGTTGATAGTCAAGGGCGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAA 3331655
Query 216220 ACTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCATTAGACTTGGCTGC 216279
||||||| ||||| ||||| || ||||| |||||||||||||| ||||| | |||||
Sbjct 3331654 CTTTGGTATAGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGC 3331595
Query 216280 TGCTGA 216285
|| |||
Sbjct 3331594 TGTTGA 3331589
>seq6
Length=366924
Score = 241 bits (266), Expect = 2e-58
Identities = 345/486 (71%), Gaps = 10/486 (2%)
Strand=Plus/Plus
Query 215801 TTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGGTGTC 215860
||||||||||||||| |||||| ||||||||||| |||||||||||||| ||||||||
Sbjct 334345 TTCCAGGCTGAGCACTTCATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 334404
Query 215861 TTCGGTGGTTCATTGTTCTCTGCAATGCA-CGGTTCACTTGTTACATCTTCTCTAATCAG 215919
||||| || || | || ||| || || ||||| | || || ||| | | |||||
Sbjct 334405 TTCGGCGGCTCCCTATTTAGTGCTATACATGGGTTCCTTGGTAACTTCTAGTTTGATCAG 334464
Query 215920 AGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGAGGAAAC 215979
|| || | || | |||||| || | ||||||| ||||| ||||| || ||||
Sbjct 334465 GGAAACCATAGAAAATGAATCTGCTAATCAAGGTTACAGATTCGGTCAAGAAGAATAAAC 334524
Query 215980 ATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGCATCTTT 216039
|||||||| |||||||| || ||||| ||||| || | ||||||| |||
Sbjct 334525 TTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCC---------GTTT 334575
Query 216040 CAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGTATCTGGGC 216099
|||||| || | | | || |||||| | || || | || || | |||| |||
Sbjct 334576 CAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTT 334635
Query 216100 AACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTTCAACCAGTC 216159
||||| | ||| | |||||||| |||||||| || ||||| || |||||||| ||
Sbjct 334636 TACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTAAATTTCAACCAATC 334695
Query 216160 TGTCGTAGACGCATCTGGTAAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGAGCAGG 216219
|| || || || |||||| ||||||||| || || ||||| | ||
Sbjct 334696 AGTAGTTGATAGTCAAGGGCGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAA 334755
Query 216220 ACTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCATTAGACTTGGCTGC 216279
||||||| ||||| ||||| || ||||| |||||||||||||| ||||| | |||||
Sbjct 334756 CTTTGGTATAGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGC 334815
Query 216280 TGCTGA 216285
|| |||
Sbjct 334816 TGTTGA 334821
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 745081534805360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |