Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq7 526 3e-144 seq2 255 7e-63 seq6 246 4e-60 >seq7 Length=154478 Score = 526 bits (582), Expect = 3e-144 Identities = 707/984 (72%), Gaps = 0/984 (0%) Strand=Plus/Minus Query 169699 TGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCCCA 169758 ||| |||| ||||| | ||||| | || |||| ||||| ||||| ||||||||||| Sbjct 1387 TGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCT 1328 Query 169759 TGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGGAC 169818 |||| | ||| | | ||||| | || ||||| || ||||| || || || Sbjct 1327 ACCTTATTGACCGCAACTTCTGTTTTTATTATCGCATTCATTGCTGCTCCTCCAGTAGAT 1268 Query 169819 ATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCTCT 169878 || ||||| || | |||||||| | || || | | || || ||||| || || || Sbjct 1267 ATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCC 1208 Query 169879 GGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAGCA 169938 ||||| || |||| |||| || || || | || || || || || |||||||| Sbjct 1207 GGTGCCATTATTCCTACTTCTGCAGCTATTGGATTGCATTTTTACCCAATCTGGGAAGCT 1148 Query 169939 GCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCACTTC 169998 ||| | | ||||| ||| | || ||||| ||||||||| || || || | | ||||| Sbjct 1147 GCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTT 1088 Query 169999 CTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTATG 170058 | | || | || || |||||| | |||||||||| | |||| | |||||| Sbjct 1087 TTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATG 1028 Query 170059 CGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTA 170118 ||||||||||| ||| |||||||| ||||| || |||| || ||||| ||||| Sbjct 1027 CGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGCTGTTTTCTTG 968 Query 170119 GTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACA 170178 | ||||| | ||||||||| ||| || || || ||||||||||| ||||| ||||| Sbjct 967 ATCTATCCAATTGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACT 908 Query 170179 TTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCATATG 170238 || ||||| ||| | |||||||| || |||||||||||||||||||||||||| || ||| Sbjct 907 TTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATG 848 Query 170239 GCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCACTTGTA 170298 ||| || |||||| | ||||| || | || || || ||||| ||||| | ||| Sbjct 847 TTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTTTTTAGTGCTATGCATGGTTCCTTGGTA 788 Query 170299 ACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATACAAATTC 170358 || ||| | | ||||| || || ||||| || || || || | || |||| |||| Sbjct 787 ACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTC 728 Query 170359 GGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACTTATC 170418 || |||||||||||||| ||||||||||| || || || || || ||||| || | || Sbjct 727 GGGCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGCCGATTGATT 668 Query 170419 TTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATTCCCT 170478 |||||||||||||| || |||||| |||| | | || |||||| | || | | || Sbjct 667 TTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCG 608 Query 170479 GTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAATGGA 170538 |||||| | || ||||| ||| | | |||||| | || ||||| || ||||| ||||| Sbjct 607 GTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGT 548 Query 170539 TTTAACTTCAACCAGTCAATCGTAGATGGATCTGGTAAAGTAGTTCCTACATGGGCAGAC 170598 || || |||||||| ||| | || ||| | || || || ||| ||||| || Sbjct 547 TTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACTTGGGCTGAT 488 Query 170599 GTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACACAACTTC 170658 || ||||| | || ||||| ||||||||||| |||||||| |||||||| ||||||||| Sbjct 487 ATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTC 428 Query 170659 CCACTTGACTTGGCAACTGCTGAG 170682 || || ||| | || ||| |||| Sbjct 427 CCTCTAGACCTAGCTGCTGTTGAG 404 >seq2 Length=19698289 Score = 255 bits (282), Expect = 7e-63 Identities = 350/489 (72%), Gaps = 10/489 (2%) Strand=Plus/Minus Query 170195 TATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCATATGGCAGGGGTTGCTGGTA 170254 ||||||| || |||||||||||||||||||||||||| || ||| ||| || |||||| Sbjct 3332067 TATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTG 3332008 Query 170255 TGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCACTTG-TAACATCTTCTCTAATC 170313 | ||||| || | || || || || || || | |||| |||| ||| | | ||| Sbjct 3332007 TATTCGGCGGCTCCCTATTTAGTGCTATACATGGGTTCCTTGGTAACTTCTAGTTTGATC 3331948 Query 170314 AGAGAGACAACAGATAACGAGTCACAGAACTATGGATACAAATTCGGACAAGAAGAAGAA 170373 || || || | ||| || || || || | || |||| |||||| ||||||||| || Sbjct 3331947 AGGGAAACCATAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAATAA 3331888 Query 170374 ACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACTTATCTTCCAATATGCTAGC 170433 || ||||||||||| || || ||||| || ||||| || | ||||||| | Sbjct 3331887 ACTTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCC---------GT 3331837 Query 170434 TTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATTCCCTGTAGTATGCATCTGG 170493 || |||||| |||| | | || |||||| | || | | || |||||| | || ||| Sbjct 3331836 TTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGG 3331777 Query 170494 TTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAATGGATTTAACTTCAACCAG 170553 || ||| | | |||||| |||| ||||| || ||||| ||||| || || |||||||| Sbjct 3331776 TTTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTAAATTTCAACCAA 3331717 Query 170554 TCAATCGTAGATGGATCTGGTAAAGTAGTTCCTACATGGGCAGACGTTCTTAACAGAGCA 170613 ||| | || ||| | || || || ||| ||||| || || ||||| | || Sbjct 3331716 TCAGTAGTTGATAGTCAAGGGCGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCT 3331657 Query 170614 AACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACACAACTTCCCACTTGACTTGGCA 170673 ||| | ||||| ||||| |||||||| |||||||| ||||||||||| || ||| | || Sbjct 3331656 AACTTTGGTATAGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCT 3331597 Query 170674 ACTGCTGAG 170682 ||| |||| Sbjct 3331596 GCTGTTGAG 3331588 >seq6 Length=366924 Score = 246 bits (272), Expect = 4e-60 Identities = 348/489 (71%), Gaps = 10/489 (2%) Strand=Plus/Plus Query 170195 TATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCATATGGCAGGGGTTGCTGGTA 170254 ||||||| || |||||| |||||||||||||||||| || ||| ||| || |||||| Sbjct 334343 TATTCCAGGCTGAGCACTTCATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTG 334402 Query 170255 TGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCACTTG-TAACATCTTCTCTAATC 170313 | ||||| || | || || || || || || | |||| |||| ||| | | ||| Sbjct 334403 TATTCGGCGGCTCCCTATTTAGTGCTATACATGGGTTCCTTGGTAACTTCTAGTTTGATC 334462 Query 170314 AGAGAGACAACAGATAACGAGTCACAGAACTATGGATACAAATTCGGACAAGAAGAAGAA 170373 || || || | ||| || || || || | || |||| |||||| ||||||||| || Sbjct 334463 AGGGAAACCATAGAAAATGAATCTGCTAATCAAGGTTACAGATTCGGTCAAGAAGAATAA 334522 Query 170374 ACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACTTATCTTCCAATATGCTAGC 170433 || ||||||||||| || || ||||| || ||||| || | ||||||| | Sbjct 334523 ACTTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCC---------GT 334573 Query 170434 TTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATTCCCTGTAGTATGCATCTGG 170493 || |||||| |||| | | || |||||| | || | | || |||||| | || ||| Sbjct 334574 TTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGG 334633 Query 170494 TTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAATGGATTTAACTTCAACCAG 170553 || ||| | | |||||| |||| ||||| || ||||| ||||| || || |||||||| Sbjct 334634 TTTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTAAATTTCAACCAA 334693 Query 170554 TCAATCGTAGATGGATCTGGTAAAGTAGTTCCTACATGGGCAGACGTTCTTAACAGAGCA 170613 ||| | || ||| | || || || ||| ||||| || || ||||| | || Sbjct 334694 TCAGTAGTTGATAGTCAAGGGCGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCT 334753 Query 170614 AACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACACAACTTCCCACTTGACTTGGCA 170673 ||| | ||||| ||||| |||||||| |||||||| ||||||||||| || ||| | || Sbjct 334754 AACTTTGGTATAGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCT 334813 Query 170674 ACTGCTGAG 170682 ||| |||| Sbjct 334814 GCTGTTGAG 334822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582847949000800