Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq7 630 8e-176 seq2 298 6e-76 seq6 289 3e-73 >seq7 Length=154478 Score = 630 bits (698), Expect = 8e-176 Identities = 725/973 (75%), Gaps = 2/973 (0%) Strand=Plus/Plus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 |||||||| || || |||||||| ||||| |||||||||||||| ||||| |||| Sbjct 426 GGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTAATA 485 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | ||| ||||| ||||| | |||||| ||| ||||| || | || ||||| || Sbjct 486 ATATCAGCCCAAGTATTAATAACACGTCCTTGACTATCAACTACTGATTGGTTGAAATTG 545 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164 || ||||| || || || ||||| || |||| ||| | ||||| ||||||||| || || Sbjct 546 AAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTAAACCAAATACCTACT 605 Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGG 84224 || |||||||| || ||||| || || | ||||||| ||||||||| |||||| ||| Sbjct 606 ACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAAACTAGCATATTGG 665 Query 84225 AAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGA 84284 || || | || || || || ||||||||||| ||||| || |||||||| |||||||| Sbjct 666 AAAATCAATCGGCCAAAATAACCGTGAGCAGCTACAATGTTGTAAGTTTCTTCTTCTTGC 725 Query 84285 CCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAA 84344 ||||| ||||||| | || || |||||||||| ||||| | ||| | | |||| Sbjct 726 CCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAA 785 Query 84345 GTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCC 84404 || || | ||||||||||| ||| || || | || |||||||||||||| || || Sbjct 786 GTTACCAAGGAACCATGCATAGCACTAAAAAGGGAGCCGCCGAATACACCAGCTACACCT 845 Query 84405 AACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTG 84464 ||||||||||| || |||||||| ||||| || || |||||||| |||| ||| ||||| Sbjct 846 AACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACAATCATAAAGTTG 905 Query 84465 AACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATAC 84524 || || || ||||| || || ||||| |||||||| ||| || || || | ||||| Sbjct 906 AAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCCTGACCAATTGGATAG 965 Query 84525 ACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGA 84584 | | ||| ||||||| || |||||||| ||||| || || |||||| ||||| ||| Sbjct 966 ATCAAGAAAACAGCAGTCGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGA 1025 Query 84585 CGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAAATGCACCAATC 84644 |||||||| ||||| | ||||||||| ||||||||||| ||| | | |||||| Sbjct 1026 CGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGT 1085 Query 84645 AGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACTT 84704 | ||||| | |||| |||| |||||| || || || ||||||||||| || | | Sbjct 1086 AAAAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTTGTATAGCCATTCATCAACGGAT 1145 Query 84705 GCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACGGCA 84764 || |||||||| || || || ||||| | |||||||| ||| | |||| | |||| Sbjct 1146 GCAGCTTCCCAGATTGGGTAAAAATGCAATCCAATAGCTGCAGAAGTAGGAATAATGGCA 1205 Query 84765 CCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGATACCGTCA 84824 || ||||| || ||||||||||| | ||||| |||| || || ||||| ||||| ||| Sbjct 1206 CCGGAAATAATATTGTTTCCGTAAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCA 1265 Query 84825 ATATCAACTGGGGGTGCACCAACGAATGCAATGAT-GAAACAGACAGTGGCAGCAAGTAG 84883 ||||| ||||| || ||| ||| |||||| || || ||||||| ||| || | | || Sbjct 1266 ATATCTACTGGAGGAGCAGCAATGAATGCGATAATAAAAACAGA-AGTTGCGGTCAATAA 1324 Query 84884 AGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTGTTAGTGGAGGTGAC 84943 || || ||||| | | |||||||| |||| || | |||||| | |||| || | Sbjct 1325 GGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTAGTTAT 1384 Query 84944 CCAATCACAGAAG 84956 ||| | ||||||| Sbjct 1385 CCAGTTACAGAAG 1397 >seq2 Length=19698289 Score = 298 bits (330), Expect = 6e-76 Identities = 346/465 (74%), Gaps = 10/465 (2%) Strand=Plus/Plus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 |||||||| || || |||||||| ||||| ||||| ||||||| ||||| |||| Sbjct 3331610 GGGAAGTTGTGAGCATTACGTTCATGCATAACTTCTATACCAAAGTTAGCACGGTTAATA 3331669 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | ||| ||||| ||||| | |||||| ||| ||||| || | || ||||| || Sbjct 3331670 ATATCAGCCCAAGTATTAATAACACGCCCTTGACTATCAACTACTGATTGGTTGAAATTT 3331729 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164 || ||||| || || || ||||| ||||||| ||| | ||||| ||||||||| || || Sbjct 3331730 AAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTAAACCAAATACCTACT 3331789 Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGG 84224 || |||||||| || ||||| || || | ||||||| ||||||||| || || Sbjct 3331790 ACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAA--------AC-GG 3331840 Query 84225 AAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGA 84284 ||||| | || || || || || |||||||| ||||| || ||||||| ||||||||| Sbjct 3331841 AAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATGTTGTAAGTTTATTCTTCTTGA 3331900 Query 84285 CCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAA 84344 ||||| ||||||| | || || |||||||| | ||||| | ||| | | |||| Sbjct 3331901 CCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTATGGTTTCCCTGATCAAACTAGAA 3331960 Query 84345 GTGACAAGTGAACC-ATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCC 84403 || || | ||||| ||| || ||| ||||| | || |||||||||||||| || || Sbjct 3331961 GTTACCAAGGAACCCATGTATAGCACTAAATAGGGAGCCGCCGAATACACCAGCTACACC 3332020 Query 84404 CAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAA 84448 ||||||||||| || |||||||| ||||| || || |||||||| Sbjct 3332021 TAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAA 3332065 >seq6 Length=366924 Score = 289 bits (320), Expect = 3e-73 Identities = 344/465 (74%), Gaps = 10/465 (2%) Strand=Plus/Minus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 |||||||| || || |||||||| ||||| ||||| ||||||| ||||| |||| Sbjct 334800 GGGAAGTTGTGAGCATTACGTTCATGCATAACTTCTATACCAAAGTTAGCACGGTTAATA 334741 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | ||| ||||| ||||| | |||||| ||| ||||| || | || ||||| || Sbjct 334740 ATATCAGCCCAAGTATTAATAACACGCCCTTGACTATCAACTACTGATTGGTTGAAATTT 334681 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164 || ||||| || || || ||||| ||||||| ||| | ||||| ||||||||| || || Sbjct 334680 AAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTAAACCAAATACCTACT 334621 Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGG 84224 || |||||||| || ||||| || || | ||||||| ||||||||| || || Sbjct 334620 ACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAA--------AC-GG 334570 Query 84225 AAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGA 84284 ||||| | || || || || || |||||||| ||||| || ||||||| ||||||||| Sbjct 334569 AAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATGTTGTAAGTTTATTCTTCTTGA 334510 Query 84285 CCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAA 84344 ||||| ||||||| | || || |||||||| | ||||| | ||| | | |||| Sbjct 334509 CCGAATCTGTAACCTTGATTAGCAGATTCATTTTCTATGGTTTCCCTGATCAAACTAGAA 334450 Query 84345 GTGA-CAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCC 84403 || | |||| | ||||| || ||| ||||| | || |||||||||||||| || || Sbjct 334449 GTTACCAAGGAACCCATGTATAGCACTAAATAGGGAGCCGCCGAATACACCAGCTACACC 334390 Query 84404 CAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAA 84448 ||||||||||| || |||||||| ||| || || |||||||| Sbjct 334389 TAACATGTGAAATGGGTGCATAAGAATGAAGTGCTCAGCCTGGAA 334345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571273550013560