Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11]
7 sequences; 119,667,750 total letters
Query= NC_015569.1
Length=178563
Score E
Sequences producing significant alignments: (Bits) Value
seq7 630 8e-176
seq2 298 6e-76
seq6 289 3e-73
>seq7
Length=154478
Score = 630 bits (698), Expect = 8e-176
Identities = 725/973 (75%), Gaps = 2/973 (0%)
Strand=Plus/Plus
Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044
|||||||| || || |||||||| ||||| |||||||||||||| ||||| ||||
Sbjct 426 GGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTAATA 485
Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104
| ||| ||||| ||||| | |||||| ||| ||||| || | || ||||| ||
Sbjct 486 ATATCAGCCCAAGTATTAATAACACGTCCTTGACTATCAACTACTGATTGGTTGAAATTG 545
Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164
|| ||||| || || || ||||| || |||| ||| | ||||| ||||||||| || ||
Sbjct 546 AAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTAAACCAAATACCTACT 605
Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGG 84224
|| |||||||| || ||||| || || | ||||||| ||||||||| |||||| |||
Sbjct 606 ACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAAACTAGCATATTGG 665
Query 84225 AAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGA 84284
|| || | || || || || ||||||||||| ||||| || |||||||| ||||||||
Sbjct 666 AAAATCAATCGGCCAAAATAACCGTGAGCAGCTACAATGTTGTAAGTTTCTTCTTCTTGC 725
Query 84285 CCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAA 84344
||||| ||||||| | || || |||||||||| ||||| | ||| | | ||||
Sbjct 726 CCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAA 785
Query 84345 GTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCC 84404
|| || | ||||||||||| ||| || || | || |||||||||||||| || ||
Sbjct 786 GTTACCAAGGAACCATGCATAGCACTAAAAAGGGAGCCGCCGAATACACCAGCTACACCT 845
Query 84405 AACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTG 84464
||||||||||| || |||||||| ||||| || || |||||||| |||| ||| |||||
Sbjct 846 AACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACAATCATAAAGTTG 905
Query 84465 AACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATAC 84524
|| || || ||||| || || ||||| |||||||| ||| || || || | |||||
Sbjct 906 AAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCCTGACCAATTGGATAG 965
Query 84525 ACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGA 84584
| | ||| ||||||| || |||||||| ||||| || || |||||| ||||| |||
Sbjct 966 ATCAAGAAAACAGCAGTCGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGA 1025
Query 84585 CGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAAATGCACCAATC 84644
|||||||| ||||| | ||||||||| ||||||||||| ||| | | ||||||
Sbjct 1026 CGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGT 1085
Query 84645 AGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACTT 84704
| ||||| | |||| |||| |||||| || || || ||||||||||| || | |
Sbjct 1086 AAAAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTTGTATAGCCATTCATCAACGGAT 1145
Query 84705 GCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACGGCA 84764
|| |||||||| || || || ||||| | |||||||| ||| | |||| | ||||
Sbjct 1146 GCAGCTTCCCAGATTGGGTAAAAATGCAATCCAATAGCTGCAGAAGTAGGAATAATGGCA 1205
Query 84765 CCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGATACCGTCA 84824
|| ||||| || ||||||||||| | ||||| |||| || || ||||| ||||| |||
Sbjct 1206 CCGGAAATAATATTGTTTCCGTAAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCA 1265
Query 84825 ATATCAACTGGGGGTGCACCAACGAATGCAATGAT-GAAACAGACAGTGGCAGCAAGTAG 84883
||||| ||||| || ||| ||| |||||| || || ||||||| ||| || | | ||
Sbjct 1266 ATATCTACTGGAGGAGCAGCAATGAATGCGATAATAAAAACAGA-AGTTGCGGTCAATAA 1324
Query 84884 AGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTGTTAGTGGAGGTGAC 84943
|| || ||||| | | |||||||| |||| || | |||||| | |||| || |
Sbjct 1325 GGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTAGTTAT 1384
Query 84944 CCAATCACAGAAG 84956
||| | |||||||
Sbjct 1385 CCAGTTACAGAAG 1397
>seq2
Length=19698289
Score = 298 bits (330), Expect = 6e-76
Identities = 346/465 (74%), Gaps = 10/465 (2%)
Strand=Plus/Plus
Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044
|||||||| || || |||||||| ||||| ||||| ||||||| ||||| ||||
Sbjct 3331610 GGGAAGTTGTGAGCATTACGTTCATGCATAACTTCTATACCAAAGTTAGCACGGTTAATA 3331669
Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104
| ||| ||||| ||||| | |||||| ||| ||||| || | || ||||| ||
Sbjct 3331670 ATATCAGCCCAAGTATTAATAACACGCCCTTGACTATCAACTACTGATTGGTTGAAATTT 3331729
Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164
|| ||||| || || || ||||| ||||||| ||| | ||||| ||||||||| || ||
Sbjct 3331730 AAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTAAACCAAATACCTACT 3331789
Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGG 84224
|| |||||||| || ||||| || || | ||||||| ||||||||| || ||
Sbjct 3331790 ACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAA--------AC-GG 3331840
Query 84225 AAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGA 84284
||||| | || || || || || |||||||| ||||| || ||||||| |||||||||
Sbjct 3331841 AAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATGTTGTAAGTTTATTCTTCTTGA 3331900
Query 84285 CCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAA 84344
||||| ||||||| | || || |||||||| | ||||| | ||| | | ||||
Sbjct 3331901 CCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTATGGTTTCCCTGATCAAACTAGAA 3331960
Query 84345 GTGACAAGTGAACC-ATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCC 84403
|| || | ||||| ||| || ||| ||||| | || |||||||||||||| || ||
Sbjct 3331961 GTTACCAAGGAACCCATGTATAGCACTAAATAGGGAGCCGCCGAATACACCAGCTACACC 3332020
Query 84404 CAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAA 84448
||||||||||| || |||||||| ||||| || || ||||||||
Sbjct 3332021 TAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAA 3332065
>seq6
Length=366924
Score = 289 bits (320), Expect = 3e-73
Identities = 344/465 (74%), Gaps = 10/465 (2%)
Strand=Plus/Minus
Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044
|||||||| || || |||||||| ||||| ||||| ||||||| ||||| ||||
Sbjct 334800 GGGAAGTTGTGAGCATTACGTTCATGCATAACTTCTATACCAAAGTTAGCACGGTTAATA 334741
Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104
| ||| ||||| ||||| | |||||| ||| ||||| || | || ||||| ||
Sbjct 334740 ATATCAGCCCAAGTATTAATAACACGCCCTTGACTATCAACTACTGATTGGTTGAAATTT 334681
Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164
|| ||||| || || || ||||| ||||||| ||| | ||||| ||||||||| || ||
Sbjct 334680 AAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTAAACCAAATACCTACT 334621
Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGG 84224
|| |||||||| || ||||| || || | ||||||| ||||||||| || ||
Sbjct 334620 ACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAA--------AC-GG 334570
Query 84225 AAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGA 84284
||||| | || || || || || |||||||| ||||| || ||||||| |||||||||
Sbjct 334569 AAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATGTTGTAAGTTTATTCTTCTTGA 334510
Query 84285 CCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAA 84344
||||| ||||||| | || || |||||||| | ||||| | ||| | | ||||
Sbjct 334509 CCGAATCTGTAACCTTGATTAGCAGATTCATTTTCTATGGTTTCCCTGATCAAACTAGAA 334450
Query 84345 GTGA-CAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCC 84403
|| | |||| | ||||| || ||| ||||| | || |||||||||||||| || ||
Sbjct 334449 GTTACCAAGGAACCCATGTATAGCACTAAATAGGGAGCCGCCGAATACACCAGCTACACC 334390
Query 84404 CAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAA 84448
||||||||||| || |||||||| ||| || || ||||||||
Sbjct 334389 TAACATGTGAAATGGGTGCATAAGAATGAAGTGCTCAGCCTGGAA 334345
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571273550013560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |