Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11]
7 sequences; 119,667,750 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq5 167 3e-36
seq2 113 5e-20
>seq5
Length=26975502
Score = 167 bits (184), Expect = 3e-36
Identities = 409/607 (67%), Gaps = 20/607 (3%)
Strand=Plus/Minus
Query 18942 AAGATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAA 19001
|||| | || | |||||||| || |||||||| || || || |||||||| |||||
Sbjct 16408814 AAGAAGACTATATATCAAACAAGCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAA 16408755
Query 19002 TTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGC 19061
||| || ||||| || | |||||||| | |||| ||| || ||||||||||| ||| |
Sbjct 16408754 TTCGTTTGAAAAAGTGAGTCCAGGCATTAAACCTCGTTTCTTCAACCAGAATATCGAA-C 16408696
Query 19062 AAATGAT-CCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCAT 19120
||| | | || || |||||||||||||| || ||||| || || | ||| || |
Sbjct 16408695 AAAAGCTACCGGAGAAGAATATACCTTCAACGCAAGCAAACGCTACGATTCTCTCAGCGA 16408636
Query 19121 AACT---AGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACAC 19177
| || || ||| | || |||||||||| ||||| || || | |||| |||
Sbjct 16408635 AGCTTTGAG-ATCCGT----TG-ATCCATTTCATAGCCCATTCTGC--TTTTTTCGTCAC 16408584
Query 19178 ATGGCATTGTCTCTATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATG 19237
| || || || || || | | ||| |||| | ||| | | ||||| | ||| |
Sbjct 16408583 AAGGAATGGTTTCGATTGCACGAAAAAGATGATCTCTCTCTTTGTTGTCTTTGATATACG 16408524
Query 19238 CATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGT 19297
|| | | | ||| ||||| || || |||||||| || || || || || |||||||
Sbjct 16408523 TGTCGAGAAGGAGACTATACATCTCGGAGTGAATATTCTCAATCGCGATTTGGAATCCGT 16408464
Query 19298 AAAAACATCTTGCTTCTGTTATCTGTACTTCACTACA-AAATCT-TTCGACCAAATTTTC 19355
| || | ||||||| ||||| || || ||| ||||| | || | ||| ||
Sbjct 16408463 AGAAGGCACGAGCTTCTGAGATCTGAACATC-GGACATGAATCTAGTTGA-GAGATTCTC 16408406
Query 19356 ATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTC 19415
||| ||||| || || || || || || | || |||||||| || || |||
Sbjct 16408405 GAGAACGATTCCGTCTGATGCGGCGAAGAAGGCGAGGACGTGTTTAATGAAGTGACGTTC 16408346
Query 19416 ATCTGAGGTTAATG---TATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAAC 19472
|| ||||| || | | ||| || | | |||| ||| | ||| |||||||| |
Sbjct 16408345 GTCGTTGGTTAGTGAGTTTTCCCAGTCGCGATTGTCTTGAGAGAGATCGACTTCTTCGGC 16408286
Query 19473 TGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGATATTGTATAGG 19532
|||||| || || || || ||||| || ||||| | ||| || | | ||||| || ||
Sbjct 16408285 TGTCCAGAAGGATGCTTCGGCTTTCTTGTACATCTCCCAAATCTGTGGGTATTGGATTGG 16408226
Query 19533 AAATATA 19539
|| |||
Sbjct 16408225 GAACATA 16408219
>seq2
Length=19698289
Score = 113 bits (124), Expect = 5e-20
Identities = 158/222 (71%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419
|||||||| || | ||| | || |||| ||| | || | | ||| || |||||||||
Sbjct 9294858 CCTCCTTGGTCAACATAACGAGCTGTATCGTTGAATACACGCAGCATAGGAACAATACCA 9294799
Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479
|| ||| | ||||| || || ||| |||||||| |||| | |||||| || ||||
Sbjct 9294798 TTAGATGTTCCATTTGTGCCACGAATGTAACTTCCGGTAGCACGAATATTATGAACTGAA 9294739
Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539
| ||| ||||| || || ||| ||| | ||||||| ||| || || ||||| ||
Sbjct 9294738 ACACCAATACCCCCAGCAGATTTGCTTATAACAGCACACTCTTTGAGTGTTTCATATATG 9294679
Query 48540 CCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTA 48581
|| || || ||||||||| |||| | |||||| || |||
Sbjct 9294678 CCCTCAATGCTATCATCTTTCATGCAGACTAGAAAGCAGCTA 9294637
Score = 82.4 bits (90), Expect = 9e-11
Identities = 139/199 (70%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658
|||||||| || || | || |||||||||||| | |||||| ||| || | ||| |
Sbjct 9294517 AGTTCCTGCGTTGAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTGAGACATCAAATG 9294458
Query 48659 ATATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGATACACGCATTA 48717
|| |||| || || ||||| ||||| | ||| || || || | || || | ||| |
Sbjct 9294457 GTAGGTTTGGATCACGGAATCAATATCATCCTTG-TGGATCCCAACAGCAACCCTCATCA 9294399
Query 48718 ACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCA 48777
||| | |||||| |||||||||| | | | |||||| || || ||| | || |
Sbjct 9294398 GCATGTGTTGAGGCCTTTCAACAACAGTCCCTTGGACTTTCAAGAGGTACGATCTCTCAA 9294339
Query 48778 ATGTTTTAAAACCAAAATA 48796
|||||||| ||||| ||
Sbjct 9294338 GAGTTTTAAATCCAAAGTA 9294320
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562108750815480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |