Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq5 167 3e-36 seq2 113 5e-20 >seq5 Length=26975502 Score = 167 bits (184), Expect = 3e-36 Identities = 409/607 (67%), Gaps = 20/607 (3%) Strand=Plus/Minus Query 18942 AAGATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAA 19001 |||| | || | |||||||| || |||||||| || || || |||||||| ||||| Sbjct 16408814 AAGAAGACTATATATCAAACAAGCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAA 16408755 Query 19002 TTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGC 19061 ||| || ||||| || | |||||||| | |||| ||| || ||||||||||| ||| | Sbjct 16408754 TTCGTTTGAAAAAGTGAGTCCAGGCATTAAACCTCGTTTCTTCAACCAGAATATCGAA-C 16408696 Query 19062 AAATGAT-CCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCAT 19120 ||| | | || || |||||||||||||| || ||||| || || | ||| || | Sbjct 16408695 AAAAGCTACCGGAGAAGAATATACCTTCAACGCAAGCAAACGCTACGATTCTCTCAGCGA 16408636 Query 19121 AACT---AGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACAC 19177 | || || ||| | || |||||||||| ||||| || || | |||| ||| Sbjct 16408635 AGCTTTGAG-ATCCGT----TG-ATCCATTTCATAGCCCATTCTGC--TTTTTTCGTCAC 16408584 Query 19178 ATGGCATTGTCTCTATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATG 19237 | || || || || || | | ||| |||| | ||| | | ||||| | ||| | Sbjct 16408583 AAGGAATGGTTTCGATTGCACGAAAAAGATGATCTCTCTCTTTGTTGTCTTTGATATACG 16408524 Query 19238 CATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGT 19297 || | | | ||| ||||| || || |||||||| || || || || || ||||||| Sbjct 16408523 TGTCGAGAAGGAGACTATACATCTCGGAGTGAATATTCTCAATCGCGATTTGGAATCCGT 16408464 Query 19298 AAAAACATCTTGCTTCTGTTATCTGTACTTCACTACA-AAATCT-TTCGACCAAATTTTC 19355 | || | ||||||| ||||| || || ||| ||||| | || | ||| || Sbjct 16408463 AGAAGGCACGAGCTTCTGAGATCTGAACATC-GGACATGAATCTAGTTGA-GAGATTCTC 16408406 Query 19356 ATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTC 19415 ||| ||||| || || || || || || | || |||||||| || || ||| Sbjct 16408405 GAGAACGATTCCGTCTGATGCGGCGAAGAAGGCGAGGACGTGTTTAATGAAGTGACGTTC 16408346 Query 19416 ATCTGAGGTTAATG---TATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAAC 19472 || ||||| || | | ||| || | | |||| ||| | ||| |||||||| | Sbjct 16408345 GTCGTTGGTTAGTGAGTTTTCCCAGTCGCGATTGTCTTGAGAGAGATCGACTTCTTCGGC 16408286 Query 19473 TGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGATATTGTATAGG 19532 |||||| || || || || ||||| || ||||| | ||| || | | ||||| || || Sbjct 16408285 TGTCCAGAAGGATGCTTCGGCTTTCTTGTACATCTCCCAAATCTGTGGGTATTGGATTGG 16408226 Query 19533 AAATATA 19539 || ||| Sbjct 16408225 GAACATA 16408219 >seq2 Length=19698289 Score = 113 bits (124), Expect = 5e-20 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 |||||||| || | ||| | || |||| ||| | || | | ||| || ||||||||| Sbjct 9294858 CCTCCTTGGTCAACATAACGAGCTGTATCGTTGAATACACGCAGCATAGGAACAATACCA 9294799 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| | ||||| || || ||| |||||||| |||| | |||||| || |||| Sbjct 9294798 TTAGATGTTCCATTTGTGCCACGAATGTAACTTCCGGTAGCACGAATATTATGAACTGAA 9294739 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| ||||| || || ||| ||| | ||||||| ||| || || ||||| || Sbjct 9294738 ACACCAATACCCCCAGCAGATTTGCTTATAACAGCACACTCTTTGAGTGTTTCATATATG 9294679 Query 48540 CCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTA 48581 || || || ||||||||| |||| | |||||| || ||| Sbjct 9294678 CCCTCAATGCTATCATCTTTCATGCAGACTAGAAAGCAGCTA 9294637 Score = 82.4 bits (90), Expect = 9e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658 |||||||| || || | || |||||||||||| | |||||| ||| || | ||| | Sbjct 9294517 AGTTCCTGCGTTGAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTGAGACATCAAATG 9294458 Query 48659 ATATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGATACACGCATTA 48717 || |||| || || ||||| ||||| | ||| || || || | || || | ||| | Sbjct 9294457 GTAGGTTTGGATCACGGAATCAATATCATCCTTG-TGGATCCCAACAGCAACCCTCATCA 9294399 Query 48718 ACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCA 48777 ||| | |||||| |||||||||| | | | |||||| || || ||| | || | Sbjct 9294398 GCATGTGTTGAGGCCTTTCAACAACAGTCCCTTGGACTTTCAAGAGGTACGATCTCTCAA 9294339 Query 48778 ATGTTTTAAAACCAAAATA 48796 |||||||| ||||| || Sbjct 9294338 GAGTTTTAAATCCAAAGTA 9294320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108750815480