Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq7 506 6e-139 seq2 203 1e-47 seq6 194 5e-45 >seq7 Length=154478 Score = 506 bits (560), Expect = 6e-139 Identities = 702/983 (71%), Gaps = 0/983 (0%) Strand=Plus/Minus Query 25802 TTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTT 25861 || ||| | ||| | || || ||||| |||||||| || | |||||||| || || | Sbjct 1396 TTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1337 Query 25862 ATGATACCCTGCTTACTCGCAGCCACTACATGTTTTATACTTGCCTTCATCGCAGCACCG 25921 ||||| || |||| | | || ||| | |||||| | || ||||| || || || Sbjct 1336 ATGATCCCTACCTTATTGACCGCAACTTCTGTTTTTATTATCGCATTCATTGCTGCTCCT 1277 Query 25922 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 25981 || |||||||| ||||| || ||||| || ||||| || || | | |||||||||||| Sbjct 1276 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 1217 Query 25982 ATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGATC 26041 || || || || || | | || | ||| || || ||| | ||||||||||| ||| Sbjct 1216 ATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATTGGATTGCATTTTTACCCAATC 1157 Query 26042 TGGGAAGCTGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTATC 26101 |||||||||| | | || || ||||||||||| ||||| || ||| |||| ||| | Sbjct 1156 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGTT 1097 Query 26102 TTCCACTTCTTAATAGGAGTAGCAGCATATGCAGGGAGACAGTGGGAACTATCTTACAGA 26161 | ||||| ||| | || ||||| ||| || | |||||||||| || | | Sbjct 1096 CTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 1037 Query 26162 CTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCGCA 26221 || || ||| | || ||||| |||||||||| |||| || | | || || || Sbjct 1036 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGCT 977 Query 26222 GTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATC 26281 || ||||| | ||||| | || || || |||||| |||||| |||||||| || ||| Sbjct 976 GTTTTCTTGATCTATCCAATTGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATC 917 Query 26282 TCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACCCA 26341 ||||||||||| ||||||||| | |||||||| || || || || || || ||||||||| Sbjct 916 TCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCA 857 Query 26342 TTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACGGA 26401 || || ||| ||||| ||||| || ||||| || | ||||| ||||||||| || Sbjct 856 TTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTTTTTAGTGCTATGCATGGT 797 Query 26402 AGTTTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTATGGC 26461 ||||| ||||| | || ||||| ||||| | | || ||| | || Sbjct 796 TCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGT 737 Query 26462 TATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGG 26521 || | || |||||||| ||||| || || || ||||| ||||| ||||| || ||||| Sbjct 736 TACAGATTCGGGCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGC 677 Query 26522 AGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCT 26581 |||| ||||| || ||||| ||||| || || |||||| | |||||||| | || Sbjct 676 CGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCG 617 Query 26582 ACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAAC 26641 |||||||||| || || || ||| | || || | ||||| | || ||||| || ||| Sbjct 616 GCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAAC 557 Query 26642 CTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAGATAATACCTACA 26701 ||||||||||| || || ||||| |||||||| ||| | | ||| | || ||| Sbjct 556 CTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACT 497 Query 26702 TGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGCT 26761 ||||||||| | | ||||| |||||||| || | ||||||||||| || ||||||||| Sbjct 496 TGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 437 Query 26762 CATAACTTTCCACTTGACTTAGC 26784 || ||||| || || ||| |||| Sbjct 436 CACAACTTCCCTCTAGACCTAGC 414 >seq2 Length=19698289 Score = 203 bits (224), Expect = 1e-47 Identities = 336/482 (70%), Gaps = 16/482 (3%) Strand=Plus/Minus Query 26307 TATTCCAAGCAGAACATAATATACTCATGCACCCATTCCATATGGCTGGTGTTGCTGGGG 26366 ||||||| || || || || || || ||||||||||| || ||| ||||| ||||| | Sbjct 3332067 TATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTG 3332008 Query 26367 TTTTCGGTGGAGCTCTTTTCGCTGCTATGCACGGAAGTT---TGGTTACTTCCTCACTTA 26423 | ||||| || | || || |||||| || || ||| |||| ||||| | | Sbjct 3332007 TATTCGGCGGCTCCCTATTTAGTGCTATACATGG--GTTCCTTGGTAACTTCTAGTTTGA 3331950 Query 26424 TTGCAGAAACGACAGAGGAAGTCTCACAGAATTATGGCTATAAGTTTGGGCAAGATGAAG 26483 | ||||| | ||| | | || ||| | || || | || || ||||| ||| Sbjct 3331949 TCAGGGAAACCATAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAAT 3331890 Query 26484 AGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTAATTTTTCAGTATGCGA 26543 | || || || ||||| ||||| || || || ||||| |||| || || | Sbjct 3331889 AAACTTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCC--------- 3331839 Query 26544 GTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCTACTTGGCCGGTTGTTGGCATAT 26603 |||| || || |||||| | |||||||| | || |||||||||| || || || | Sbjct 3331838 GTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTT 3331779 Query 26604 GGCTGACATCTATGGGTATCTGCACAATGGCATTTAACCTAAATGGTTTTAACTTTAACC 26663 || | || || | ||||| |||| ||||| || |||||||||||||| || || |||| Sbjct 3331778 GGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTAAATTTCAACC 3331719 Query 26664 AGTCAGTAGTAGAT-GTTAATGGAAAGATAATACCTACATGGGCTGATGTATTAAACCGA 26722 | |||||||| ||| || || || | || || ||| ||||||||| | | ||||| Sbjct 3331718 AATCAGTAGTTGATAGTCAAGGGCGTGTTATTA-ATACTTGGGCTGATATTATTAACCGT 3331660 Query 26723 GCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGCTCATAACTTTCCACTTGACTTA 26782 |||||| | || | ||||||||||| || ||||||||||| ||||| || || ||| || Sbjct 3331659 GCTAACTTTGGTATAGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTA 3331600 Query 26783 GC 26784 || Sbjct 3331599 GC 3331598 >seq6 Length=366924 Score = 194 bits (214), Expect = 5e-45 Identities = 334/482 (69%), Gaps = 16/482 (3%) Strand=Plus/Plus Query 26307 TATTCCAAGCAGAACATAATATACTCATGCACCCATTCCATATGGCTGGTGTTGCTGGGG 26366 ||||||| || || || || || ||||||||||| || ||| ||||| ||||| | Sbjct 334343 TATTCCAGGCTGAGCACTTCATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTG 334402 Query 26367 TTTTCGGTGGAGCTCTTTTCGCTGCTATGCACGGAAGTT---TGGTTACTTCCTCACTTA 26423 | ||||| || | || || |||||| || || ||| |||| ||||| | | Sbjct 334403 TATTCGGCGGCTCCCTATTTAGTGCTATACATGG--GTTCCTTGGTAACTTCTAGTTTGA 334460 Query 26424 TTGCAGAAACGACAGAGGAAGTCTCACAGAATTATGGCTATAAGTTTGGGCAAGATGAAG 26483 | ||||| | ||| | | || ||| | || || | || || ||||| ||| Sbjct 334461 TCAGGGAAACCATAGAAAATGAATCTGCTAATCAAGGTTACAGATTCGGTCAAGAAGAAT 334520 Query 26484 AGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTAATTTTTCAGTATGCGA 26543 | || || || ||||| ||||| || || || ||||| |||| || || | Sbjct 334521 AAACTTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCC--------- 334571 Query 26544 GTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCTACTTGGCCGGTTGTTGGCATAT 26603 |||| || || |||||| | |||||||| | || |||||||||| || || || | Sbjct 334572 GTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTT 334631 Query 26604 GGCTGACATCTATGGGTATCTGCACAATGGCATTTAACCTAAATGGTTTTAACTTTAACC 26663 || | || || | ||||| |||| ||||| || |||||||||||||| || || |||| Sbjct 334632 GGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTAAATTTCAACC 334691 Query 26664 AGTCAGTAGTAGAT-GTTAATGGAAAGATAATACCTACATGGGCTGATGTATTAAACCGA 26722 | |||||||| ||| || || || | || || ||| ||||||||| | | ||||| Sbjct 334692 AATCAGTAGTTGATAGTCAAGGGCGTGTTATTA-ATACTTGGGCTGATATTATTAACCGT 334750 Query 26723 GCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGCTCATAACTTTCCACTTGACTTA 26782 |||||| | || | ||||||||||| || ||||||||||| ||||| || || ||| || Sbjct 334751 GCTAACTTTGGTATAGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTA 334810 Query 26783 GC 26784 || Sbjct 334811 GC 334812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146726387803368