Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11]
7 sequences; 119,667,750 total letters
Query= NC_016656.1
Length=45890
Score E
Sequences producing significant alignments: (Bits) Value
seq7 506 6e-139
seq2 203 1e-47
seq6 194 5e-45
>seq7
Length=154478
Score = 506 bits (560), Expect = 6e-139
Identities = 702/983 (71%), Gaps = 0/983 (0%)
Strand=Plus/Minus
Query 25802 TTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTT 25861
|| ||| | ||| | || || ||||| |||||||| || | |||||||| || || |
Sbjct 1396 TTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1337
Query 25862 ATGATACCCTGCTTACTCGCAGCCACTACATGTTTTATACTTGCCTTCATCGCAGCACCG 25921
||||| || |||| | | || ||| | |||||| | || ||||| || || ||
Sbjct 1336 ATGATCCCTACCTTATTGACCGCAACTTCTGTTTTTATTATCGCATTCATTGCTGCTCCT 1277
Query 25922 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 25981
|| |||||||| ||||| || ||||| || ||||| || || | | ||||||||||||
Sbjct 1276 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 1217
Query 25982 ATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGATC 26041
|| || || || || | | || | ||| || || ||| | ||||||||||| |||
Sbjct 1216 ATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATTGGATTGCATTTTTACCCAATC 1157
Query 26042 TGGGAAGCTGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTATC 26101
|||||||||| | | || || ||||||||||| ||||| || ||| |||| ||| |
Sbjct 1156 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGTT 1097
Query 26102 TTCCACTTCTTAATAGGAGTAGCAGCATATGCAGGGAGACAGTGGGAACTATCTTACAGA 26161
| ||||| ||| | || ||||| ||| || | |||||||||| || | |
Sbjct 1096 CTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 1037
Query 26162 CTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCGCA 26221
|| || ||| | || ||||| |||||||||| |||| || | | || || ||
Sbjct 1036 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGCT 977
Query 26222 GTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATC 26281
|| ||||| | ||||| | || || || |||||| |||||| |||||||| || |||
Sbjct 976 GTTTTCTTGATCTATCCAATTGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATC 917
Query 26282 TCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACCCA 26341
||||||||||| ||||||||| | |||||||| || || || || || || |||||||||
Sbjct 916 TCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCA 857
Query 26342 TTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACGGA 26401
|| || ||| ||||| ||||| || ||||| || | ||||| ||||||||| ||
Sbjct 856 TTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTTTTTAGTGCTATGCATGGT 797
Query 26402 AGTTTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTATGGC 26461
||||| ||||| | || ||||| ||||| | | || ||| | ||
Sbjct 796 TCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGT 737
Query 26462 TATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGG 26521
|| | || |||||||| ||||| || || || ||||| ||||| ||||| || |||||
Sbjct 736 TACAGATTCGGGCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGC 677
Query 26522 AGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCT 26581
|||| ||||| || ||||| ||||| || || |||||| | |||||||| | ||
Sbjct 676 CGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCG 617
Query 26582 ACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAAC 26641
|||||||||| || || || ||| | || || | ||||| | || ||||| || |||
Sbjct 616 GCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAAC 557
Query 26642 CTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAGATAATACCTACA 26701
||||||||||| || || ||||| |||||||| ||| | | ||| | || |||
Sbjct 556 CTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACT 497
Query 26702 TGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGCT 26761
||||||||| | | ||||| |||||||| || | ||||||||||| || |||||||||
Sbjct 496 TGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 437
Query 26762 CATAACTTTCCACTTGACTTAGC 26784
|| ||||| || || ||| ||||
Sbjct 436 CACAACTTCCCTCTAGACCTAGC 414
>seq2
Length=19698289
Score = 203 bits (224), Expect = 1e-47
Identities = 336/482 (70%), Gaps = 16/482 (3%)
Strand=Plus/Minus
Query 26307 TATTCCAAGCAGAACATAATATACTCATGCACCCATTCCATATGGCTGGTGTTGCTGGGG 26366
||||||| || || || || || || ||||||||||| || ||| ||||| ||||| |
Sbjct 3332067 TATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTG 3332008
Query 26367 TTTTCGGTGGAGCTCTTTTCGCTGCTATGCACGGAAGTT---TGGTTACTTCCTCACTTA 26423
| ||||| || | || || |||||| || || ||| |||| ||||| | |
Sbjct 3332007 TATTCGGCGGCTCCCTATTTAGTGCTATACATGG--GTTCCTTGGTAACTTCTAGTTTGA 3331950
Query 26424 TTGCAGAAACGACAGAGGAAGTCTCACAGAATTATGGCTATAAGTTTGGGCAAGATGAAG 26483
| ||||| | ||| | | || ||| | || || | || || ||||| |||
Sbjct 3331949 TCAGGGAAACCATAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAAT 3331890
Query 26484 AGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTAATTTTTCAGTATGCGA 26543
| || || || ||||| ||||| || || || ||||| |||| || || |
Sbjct 3331889 AAACTTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCC--------- 3331839
Query 26544 GTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCTACTTGGCCGGTTGTTGGCATAT 26603
|||| || || |||||| | |||||||| | || |||||||||| || || || |
Sbjct 3331838 GTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTT 3331779
Query 26604 GGCTGACATCTATGGGTATCTGCACAATGGCATTTAACCTAAATGGTTTTAACTTTAACC 26663
|| | || || | ||||| |||| ||||| || |||||||||||||| || || ||||
Sbjct 3331778 GGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTAAATTTCAACC 3331719
Query 26664 AGTCAGTAGTAGAT-GTTAATGGAAAGATAATACCTACATGGGCTGATGTATTAAACCGA 26722
| |||||||| ||| || || || | || || ||| ||||||||| | | |||||
Sbjct 3331718 AATCAGTAGTTGATAGTCAAGGGCGTGTTATTA-ATACTTGGGCTGATATTATTAACCGT 3331660
Query 26723 GCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGCTCATAACTTTCCACTTGACTTA 26782
|||||| | || | ||||||||||| || ||||||||||| ||||| || || ||| ||
Sbjct 3331659 GCTAACTTTGGTATAGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTA 3331600
Query 26783 GC 26784
||
Sbjct 3331599 GC 3331598
>seq6
Length=366924
Score = 194 bits (214), Expect = 5e-45
Identities = 334/482 (69%), Gaps = 16/482 (3%)
Strand=Plus/Plus
Query 26307 TATTCCAAGCAGAACATAATATACTCATGCACCCATTCCATATGGCTGGTGTTGCTGGGG 26366
||||||| || || || || || ||||||||||| || ||| ||||| ||||| |
Sbjct 334343 TATTCCAGGCTGAGCACTTCATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTG 334402
Query 26367 TTTTCGGTGGAGCTCTTTTCGCTGCTATGCACGGAAGTT---TGGTTACTTCCTCACTTA 26423
| ||||| || | || || |||||| || || ||| |||| ||||| | |
Sbjct 334403 TATTCGGCGGCTCCCTATTTAGTGCTATACATGG--GTTCCTTGGTAACTTCTAGTTTGA 334460
Query 26424 TTGCAGAAACGACAGAGGAAGTCTCACAGAATTATGGCTATAAGTTTGGGCAAGATGAAG 26483
| ||||| | ||| | | || ||| | || || | || || ||||| |||
Sbjct 334461 TCAGGGAAACCATAGAAAATGAATCTGCTAATCAAGGTTACAGATTCGGTCAAGAAGAAT 334520
Query 26484 AGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTAATTTTTCAGTATGCGA 26543
| || || || ||||| ||||| || || || ||||| |||| || || |
Sbjct 334521 AAACTTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCC--------- 334571
Query 26544 GTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCTACTTGGCCGGTTGTTGGCATAT 26603
|||| || || |||||| | |||||||| | || |||||||||| || || || |
Sbjct 334572 GTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTT 334631
Query 26604 GGCTGACATCTATGGGTATCTGCACAATGGCATTTAACCTAAATGGTTTTAACTTTAACC 26663
|| | || || | ||||| |||| ||||| || |||||||||||||| || || ||||
Sbjct 334632 GGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTAAATTTCAACC 334691
Query 26664 AGTCAGTAGTAGAT-GTTAATGGAAAGATAATACCTACATGGGCTGATGTATTAAACCGA 26722
| |||||||| ||| || || || | || || ||| ||||||||| | | |||||
Sbjct 334692 AATCAGTAGTTGATAGTCAAGGGCGTGTTATTA-ATACTTGGGCTGATATTATTAACCGT 334750
Query 26723 GCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGCTCATAACTTTCCACTTGACTTA 26782
|||||| | || | ||||||||||| || ||||||||||| ||||| || || ||| ||
Sbjct 334751 GCTAACTTTGGTATAGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTA 334810
Query 26783 GC 26784
||
Sbjct 334811 GC 334812
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 146726387803368
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |