Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq7 547 2e-151 seq2 230 7e-56 seq6 221 4e-53 >seq7 Length=154478 Score = 547 bits (606), Expect = 2e-151 Identities = 719/996 (72%), Gaps = 0/996 (0%) Strand=Plus/Plus Query 35960 AGACTCAGCAGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTC 36019 || |||| |||| |||||||| || ||||||||||| || ||||| |||||||||||||| Sbjct 401 AGCCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 460 Query 36020 CATGCCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGA 36079 ||| || | || |||||||||| ||| ||||||||||| | || | ||| | Sbjct 461 CATACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACT 520 Query 36080 ATCAACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCC 36139 |||||| ||||| || ||||| || || || || || || ||||||||||| | || Sbjct 521 ATCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACC 580 Query 36140 CATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCG 36199 | ||| |||| ||| || | || |||||||| || | ||||||||||||| || Sbjct 581 TAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACG 640 Query 36200 GCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAAC 36259 ||| || || |||||||| ||||| || | || ||||| || || ||||| || || Sbjct 641 AGAATTGTTGAAACTAGCATATTGGAAAATCAATCGGCCAAAATAACCGTGAGCAGCTAC 700 Query 36260 AATGTTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCC 36319 |||||| || || ||||||||||| |||||| | || || | || ||||||| | Sbjct 701 AATGTTGTAAGTTTCTTCTTCTTGCCCGAATCTGTAACCTTCATTAGCAGATTCATTTTC 760 Query 36320 AGTTGTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGC 36379 || ||||| | || | ||||| || | || ||||||||| || | | Sbjct 761 TGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAAAAGGGA 820 Query 36380 TCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTC 36439 || |||||||| || || ||||| | ||| || || || |||||||| || ||||| || Sbjct 821 GCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTC 880 Query 36440 TGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGA 36499 ||||| || |||| |||||| |||||||| || || || || ||||||||||||||||| Sbjct 881 AGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGA 940 Query 36500 GAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGC 36559 ||||| || || |||| || |||| ||||| |||||| || ||||||||||| || Sbjct 941 AAAACTTCCCTGACCAATTGGATAGATCAAGAAAACAGCAGTCGCAGCTGCAACAGGAGC 1000 Query 36560 TGAATAAGCTACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCG 36619 |||||| || ||| ||||| || | |||||| || | ||||||||||||| | || Sbjct 1001 TGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACG 1060 Query 36620 TCCCAAGTAAGCTGAGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCC 36679 |||| ||| | | ||||| | |||||| | ||||| |||| ||| || || || Sbjct 1061 ACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCGCC 1120 Query 36680 GTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGAT 36739 ||| |||| ||| || || | || ||||||||||||||||||||| || || | || || Sbjct 1121 GTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATTGGGTAAAAATGCAATCCAAT 1180 Query 36740 TGCGTTCGATGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCC 36799 || || | || | || || || || || || |||||||| || || | | ||| Sbjct 1181 AGCTGCAGAAGTAGGAATAATGGCACCGGAAATAATATTGTTTCCGTAAAGAAGAGATCC 1240 Query 36800 TGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAA 36859 || ||||| |||||||||||||| ||||| || ||||| ||||||| ||||| || | Sbjct 1241 AGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAAT 1300 Query 36860 AAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATA 36919 ||| | | ||| || || | | ||||||||| | || |||||||| || | || Sbjct 1301 AAAAACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTA 1360 Query 36920 GAGGCGGTTGTTTGTACTTGTAACCCAGTCACATAA 36955 || ||||| | || || || | ||||| ||| || Sbjct 1361 AAGACGGTTTTCAGTGCTAGTTATCCAGTTACAGAA 1396 >seq2 Length=19698289 Score = 230 bits (254), Expect = 7e-56 Identities = 345/490 (70%), Gaps = 10/490 (2%) Strand=Plus/Plus Query 35960 AGACTCAGCAGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTC 36019 || |||| |||| |||||||| || ||||||||||| || ||||| |||||||||||||| Sbjct 3331585 AGCCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 3331644 Query 36020 CATGCCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGA 36079 || || |||| |||||||||| ||| ||||||||||| | || | || | Sbjct 3331645 TATACCAAAGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGCCCTTGACT 3331704 Query 36080 ATCAACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCC 36139 |||||| ||||| || ||||| || || || || || || |||||||||||| | || Sbjct 3331705 ATCAACTACTGATTGGTTGAAATTTAAACCATTTAGGTTGAAAGCCATAGTGCTAATACC 3331764 Query 36140 CATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCG 36199 | ||| |||| ||| || | || |||||||| || | ||||||||||||| || Sbjct 3331765 TAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACG 3331824 Query 36200 GCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAAC 36259 ||| || || | ||||||| | || ||||| || |||||||| || || Sbjct 3331825 AGAATTGTTGAAAC---------GGAAGATCAATCGGCCAAAATAACCATGAGCAGCTAC 3331875 Query 36260 AATGTTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCC 36319 |||||| || || | ||||||||| |||||| | || || | || ||||||| | Sbjct 3331876 AATGTTGTAAGTTTATTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTC 3331935 Query 36320 AGTTGTTTCAC-GAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAG 36378 | ||||| | || || || | || |||| || || |||||| |||| | Sbjct 3331936 TATGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCCATGTATAGCACTAAATAGGG 3331995 Query 36379 CTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTT 36438 || |||||||| || || ||||| | ||| || || || |||||||| || ||||| | Sbjct 3331996 AGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCT 3332055 Query 36439 CTGCCTGAAA 36448 | ||||| || Sbjct 3332056 CAGCCTGGAA 3332065 >seq6 Length=366924 Score = 221 bits (244), Expect = 4e-53 Identities = 343/490 (70%), Gaps = 10/490 (2%) Strand=Plus/Minus Query 35960 AGACTCAGCAGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTC 36019 || |||| |||| |||||||| || ||||||||||| || ||||| |||||||||||||| Sbjct 334825 AGCCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 334766 Query 36020 CATGCCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGA 36079 || || |||| |||||||||| ||| ||||||||||| | || | || | Sbjct 334765 TATACCAAAGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGCCCTTGACT 334706 Query 36080 ATCAACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCC 36139 |||||| ||||| || ||||| || || || || || || |||||||||||| | || Sbjct 334705 ATCAACTACTGATTGGTTGAAATTTAAACCATTTAGGTTGAAAGCCATAGTGCTAATACC 334646 Query 36140 CATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCG 36199 | ||| |||| ||| || | || |||||||| || | ||||||||||||| || Sbjct 334645 TAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACG 334586 Query 36200 GCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAAC 36259 ||| || || | ||||||| | || ||||| || |||||||| || || Sbjct 334585 AGAATTGTTGAAAC---------GGAAGATCAATCGGCCAAAATAACCATGAGCAGCTAC 334535 Query 36260 AATGTTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCC 36319 |||||| || || | ||||||||| |||||| | || || | || ||||||| | Sbjct 334534 AATGTTGTAAGTTTATTCTTCTTGACCGAATCTGTAACCTTGATTAGCAGATTCATTTTC 334475 Query 36320 AGTTGTTTCAC-GAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAG 36378 | ||||| | || || || | || |||| || || |||||| |||| | Sbjct 334474 TATGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCCATGTATAGCACTAAATAGGG 334415 Query 36379 CTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTT 36438 || |||||||| || || ||||| | ||| || || || |||||||| || ||| | Sbjct 334414 AGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGAAGTGCT 334355 Query 36439 CTGCCTGAAA 36448 | ||||| || Sbjct 334354 CAGCCTGGAA 334345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150454387493478