Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11]
7 sequences; 119,667,750 total letters
Query= NC_016657.1
Length=47055
Score E
Sequences producing significant alignments: (Bits) Value
seq7 547 2e-151
seq2 230 7e-56
seq6 221 4e-53
>seq7
Length=154478
Score = 547 bits (606), Expect = 2e-151
Identities = 719/996 (72%), Gaps = 0/996 (0%)
Strand=Plus/Plus
Query 35960 AGACTCAGCAGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTC 36019
|| |||| |||| |||||||| || ||||||||||| || ||||| ||||||||||||||
Sbjct 401 AGCCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 460
Query 36020 CATGCCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGA 36079
||| || | || |||||||||| ||| ||||||||||| | || | ||| |
Sbjct 461 CATACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACT 520
Query 36080 ATCAACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCC 36139
|||||| ||||| || ||||| || || || || || || ||||||||||| | ||
Sbjct 521 ATCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACC 580
Query 36140 CATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCG 36199
| ||| |||| ||| || | || |||||||| || | ||||||||||||| ||
Sbjct 581 TAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACG 640
Query 36200 GCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAAC 36259
||| || || |||||||| ||||| || | || ||||| || || ||||| || ||
Sbjct 641 AGAATTGTTGAAACTAGCATATTGGAAAATCAATCGGCCAAAATAACCGTGAGCAGCTAC 700
Query 36260 AATGTTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCC 36319
|||||| || || ||||||||||| |||||| | || || | || ||||||| |
Sbjct 701 AATGTTGTAAGTTTCTTCTTCTTGCCCGAATCTGTAACCTTCATTAGCAGATTCATTTTC 760
Query 36320 AGTTGTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGC 36379
|| ||||| | || | ||||| || | || ||||||||| || | |
Sbjct 761 TGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAAAAGGGA 820
Query 36380 TCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTC 36439
|| |||||||| || || ||||| | ||| || || || |||||||| || ||||| ||
Sbjct 821 GCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTC 880
Query 36440 TGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGA 36499
||||| || |||| |||||| |||||||| || || || || |||||||||||||||||
Sbjct 881 AGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGA 940
Query 36500 GAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGC 36559
||||| || || |||| || |||| ||||| |||||| || ||||||||||| ||
Sbjct 941 AAAACTTCCCTGACCAATTGGATAGATCAAGAAAACAGCAGTCGCAGCTGCAACAGGAGC 1000
Query 36560 TGAATAAGCTACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCG 36619
|||||| || ||| ||||| || | |||||| || | ||||||||||||| | ||
Sbjct 1001 TGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACG 1060
Query 36620 TCCCAAGTAAGCTGAGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCC 36679
|||| ||| | | ||||| | |||||| | ||||| |||| ||| || || ||
Sbjct 1061 ACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCGCC 1120
Query 36680 GTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGAT 36739
||| |||| ||| || || | || ||||||||||||||||||||| || || | || ||
Sbjct 1121 GTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATTGGGTAAAAATGCAATCCAAT 1180
Query 36740 TGCGTTCGATGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCC 36799
|| || | || | || || || || || || |||||||| || || | | |||
Sbjct 1181 AGCTGCAGAAGTAGGAATAATGGCACCGGAAATAATATTGTTTCCGTAAAGAAGAGATCC 1240
Query 36800 TGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAA 36859
|| ||||| |||||||||||||| ||||| || ||||| ||||||| ||||| || |
Sbjct 1241 AGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAAT 1300
Query 36860 AAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATA 36919
||| | | ||| || || | | ||||||||| | || |||||||| || | ||
Sbjct 1301 AAAAACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTA 1360
Query 36920 GAGGCGGTTGTTTGTACTTGTAACCCAGTCACATAA 36955
|| ||||| | || || || | ||||| ||| ||
Sbjct 1361 AAGACGGTTTTCAGTGCTAGTTATCCAGTTACAGAA 1396
>seq2
Length=19698289
Score = 230 bits (254), Expect = 7e-56
Identities = 345/490 (70%), Gaps = 10/490 (2%)
Strand=Plus/Plus
Query 35960 AGACTCAGCAGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTC 36019
|| |||| |||| |||||||| || ||||||||||| || ||||| ||||||||||||||
Sbjct 3331585 AGCCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 3331644
Query 36020 CATGCCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGA 36079
|| || |||| |||||||||| ||| ||||||||||| | || | || |
Sbjct 3331645 TATACCAAAGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGCCCTTGACT 3331704
Query 36080 ATCAACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCC 36139
|||||| ||||| || ||||| || || || || || || |||||||||||| | ||
Sbjct 3331705 ATCAACTACTGATTGGTTGAAATTTAAACCATTTAGGTTGAAAGCCATAGTGCTAATACC 3331764
Query 36140 CATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCG 36199
| ||| |||| ||| || | || |||||||| || | ||||||||||||| ||
Sbjct 3331765 TAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACG 3331824
Query 36200 GCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAAC 36259
||| || || | ||||||| | || ||||| || |||||||| || ||
Sbjct 3331825 AGAATTGTTGAAAC---------GGAAGATCAATCGGCCAAAATAACCATGAGCAGCTAC 3331875
Query 36260 AATGTTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCC 36319
|||||| || || | ||||||||| |||||| | || || | || ||||||| |
Sbjct 3331876 AATGTTGTAAGTTTATTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTC 3331935
Query 36320 AGTTGTTTCAC-GAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAG 36378
| ||||| | || || || | || |||| || || |||||| |||| |
Sbjct 3331936 TATGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCCATGTATAGCACTAAATAGGG 3331995
Query 36379 CTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTT 36438
|| |||||||| || || ||||| | ||| || || || |||||||| || ||||| |
Sbjct 3331996 AGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCT 3332055
Query 36439 CTGCCTGAAA 36448
| ||||| ||
Sbjct 3332056 CAGCCTGGAA 3332065
>seq6
Length=366924
Score = 221 bits (244), Expect = 4e-53
Identities = 343/490 (70%), Gaps = 10/490 (2%)
Strand=Plus/Minus
Query 35960 AGACTCAGCAGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTC 36019
|| |||| |||| |||||||| || ||||||||||| || ||||| ||||||||||||||
Sbjct 334825 AGCCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 334766
Query 36020 CATGCCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGA 36079
|| || |||| |||||||||| ||| ||||||||||| | || | || |
Sbjct 334765 TATACCAAAGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGCCCTTGACT 334706
Query 36080 ATCAACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCC 36139
|||||| ||||| || ||||| || || || || || || |||||||||||| | ||
Sbjct 334705 ATCAACTACTGATTGGTTGAAATTTAAACCATTTAGGTTGAAAGCCATAGTGCTAATACC 334646
Query 36140 CATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCG 36199
| ||| |||| ||| || | || |||||||| || | ||||||||||||| ||
Sbjct 334645 TAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACG 334586
Query 36200 GCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAAC 36259
||| || || | ||||||| | || ||||| || |||||||| || ||
Sbjct 334585 AGAATTGTTGAAAC---------GGAAGATCAATCGGCCAAAATAACCATGAGCAGCTAC 334535
Query 36260 AATGTTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCC 36319
|||||| || || | ||||||||| |||||| | || || | || ||||||| |
Sbjct 334534 AATGTTGTAAGTTTATTCTTCTTGACCGAATCTGTAACCTTGATTAGCAGATTCATTTTC 334475
Query 36320 AGTTGTTTCAC-GAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAG 36378
| ||||| | || || || | || |||| || || |||||| |||| |
Sbjct 334474 TATGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCCATGTATAGCACTAAATAGGG 334415
Query 36379 CTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTT 36438
|| |||||||| || || ||||| | ||| || || || |||||||| || ||| |
Sbjct 334414 AGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGAAGTGCT 334355
Query 36439 CTGCCTGAAA 36448
| ||||| ||
Sbjct 334354 CAGCCTGGAA 334345
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 150454387493478
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |