Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq7 535 1e-147 seq2 232 2e-56 seq6 223 1e-53 >seq7 Length=154478 Score = 535 bits (592), Expect = 1e-147 Identities = 718/999 (72%), Gaps = 0/999 (0%) Strand=Plus/Plus Query 25437 TGTAGACTCAGCAGATGCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAAC 25496 || || |||| ||| |||| ||| |||||||||||||| || ||||| ||||||||||| Sbjct 398 TGGAGCCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAAC 457 Query 25497 TTCCATGCCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTT 25556 |||||| || | || |||||||||| ||| ||||||||||| | || | ||| | Sbjct 458 TTCCATACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTG 517 Query 25557 GGAATCAACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGAC 25616 |||||| ||||| || ||||| || || || || || || ||||||||||| | Sbjct 518 ACTATCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAAT 577 Query 25617 TCCCATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACT 25676 || | ||| |||| ||| || | || |||||||| || | ||||||||||||| Sbjct 578 ACCTAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGA 637 Query 25677 ACGGCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGC 25736 ||| ||| || || |||||||| ||||| || | || ||||| || || ||||| || Sbjct 638 ACGAGAATTGTTGAAACTAGCATATTGGAAAATCAATCGGCCAAAATAACCGTGAGCAGC 697 Query 25737 AACAATGTTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAG 25796 |||||||| || || ||||||||||| |||||| | || || | || ||||||| Sbjct 698 TACAATGTTGTAAGTTTCTTCTTCTTGCCCGAATCTGTAACCTTCATTAGCAGATTCATT 757 Query 25797 CCCAGTTGTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAA 25856 | || ||||| | || | ||||| || | || ||||||||| || | Sbjct 758 TTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAAAAG 817 Query 25857 AGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTG 25916 | || |||||||| || || ||||| | ||| || || || |||||||| || ||||| Sbjct 818 GGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTG 877 Query 25917 TTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATC 25976 || ||||| || |||| |||||| |||||||| || || || || |||||||||||||| Sbjct 878 CTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATC 937 Query 25977 AGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGG 26036 ||| ||||| || || |||| || |||| ||||| |||||| || ||||||||||| Sbjct 938 AGAAAAACTTCCCTGACCAATTGGATAGATCAAGAAAACAGCAGTCGCAGCTGCAACAGG 997 Query 26037 GGCTGAATAAGCTACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTG 26096 |||||||| || ||| ||||| || | ||| || || | ||||||||||||| | Sbjct 998 AGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTC 1057 Query 26097 TCGTCCCAAGTAAGCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCC 26156 || |||| ||| | | || | | |||||| | ||||| |||| ||| || || Sbjct 1058 ACGACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACC 1117 Query 26157 ACCGTTATACAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACC 26216 ||||| || | ||| || || | || ||||||||||||||||||||| || || | || Sbjct 1118 GCCGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATTGGGTAAAAATGCAATCC 1177 Query 26217 GATTGCGTTAGATGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGC 26276 || || ||| | || | || || || || || || |||||||| || || | | Sbjct 1178 AATAGCTGCAGAAGTAGGAATAATGGCACCGGAAATAATATTGTTTCCGTAAAGAAGAGA 1237 Query 26277 TCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAAT 26336 ||| || ||||| |||||||||||||| ||||| || ||||| ||||||| ||||| || Sbjct 1238 TCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGAT 1297 Query 26337 TAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCAC 26396 | ||| | | ||| || || | | ||||||||| | || |||||||| || | Sbjct 1298 AATAAAAACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAAT 1357 Query 26397 ATAGAGGCGGTTGTTTGTACTTGTAACCCAGTCACATAA 26435 || || ||||| | || || || | ||||| ||| || Sbjct 1358 GTAAAGACGGTTTTCAGTGCTAGTTATCCAGTTACAGAA 1396 >seq2 Length=19698289 Score = 232 bits (256), Expect = 2e-56 Identities = 347/493 (70%), Gaps = 10/493 (2%) Strand=Plus/Plus Query 25437 TGTAGACTCAGCAGATGCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAAC 25496 || || |||| ||| |||| ||| |||||||||||||| || ||||| ||||||||||| Sbjct 3331582 TGGAGCCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAAC 3331641 Query 25497 TTCCATGCCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTT 25556 ||| || || |||| |||||||||| ||| ||||||||||| | || | || | Sbjct 3331642 TTCTATACCAAAGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGCCCTTG 3331701 Query 25557 GGAATCAACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGAC 25616 |||||| ||||| || ||||| || || || || || || |||||||||||| | Sbjct 3331702 ACTATCAACTACTGATTGGTTGAAATTTAAACCATTTAGGTTGAAAGCCATAGTGCTAAT 3331761 Query 25617 TCCCATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACT 25676 || | ||| |||| ||| || | || |||||||| || | ||||||||||||| Sbjct 3331762 ACCTAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGA 3331821 Query 25677 ACGGCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGC 25736 ||| ||| || || | ||||||| | || ||||| || |||||||| || Sbjct 3331822 ACGAGAATTGTTGAAAC---------GGAAGATCAATCGGCCAAAATAACCATGAGCAGC 3331872 Query 25737 AACAATGTTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAG 25796 |||||||| || || | ||||||||| |||||| | || || | || ||||||| Sbjct 3331873 TACAATGTTGTAAGTTTATTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATT 3331932 Query 25797 CCCAGTTGTTTCAC-GAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATA 25855 | | ||||| | || || || | || |||| || || |||||| |||| Sbjct 3331933 TTCTATGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCCATGTATAGCACTAAATA 3331992 Query 25856 AAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGT 25915 | || |||||||| || || ||||| | ||| || || || |||||||| || |||| Sbjct 3331993 GGGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGT 3332052 Query 25916 GTTCTGCCTGAAA 25928 | || ||||| || Sbjct 3332053 GCTCAGCCTGGAA 3332065 >seq6 Length=366924 Score = 223 bits (246), Expect = 1e-53 Identities = 345/493 (70%), Gaps = 10/493 (2%) Strand=Plus/Minus Query 25437 TGTAGACTCAGCAGATGCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAAC 25496 || || |||| ||| |||| ||| |||||||||||||| || ||||| ||||||||||| Sbjct 334828 TGGAGCCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAAC 334769 Query 25497 TTCCATGCCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTT 25556 ||| || || |||| |||||||||| ||| ||||||||||| | || | || | Sbjct 334768 TTCTATACCAAAGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGCCCTTG 334709 Query 25557 GGAATCAACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGAC 25616 |||||| ||||| || ||||| || || || || || || |||||||||||| | Sbjct 334708 ACTATCAACTACTGATTGGTTGAAATTTAAACCATTTAGGTTGAAAGCCATAGTGCTAAT 334649 Query 25617 TCCCATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACT 25676 || | ||| |||| ||| || | || |||||||| || | ||||||||||||| Sbjct 334648 ACCTAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGA 334589 Query 25677 ACGGCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGC 25736 ||| ||| || || | ||||||| | || ||||| || |||||||| || Sbjct 334588 ACGAGAATTGTTGAAAC---------GGAAGATCAATCGGCCAAAATAACCATGAGCAGC 334538 Query 25737 AACAATGTTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAG 25796 |||||||| || || | ||||||||| |||||| | || || | || ||||||| Sbjct 334537 TACAATGTTGTAAGTTTATTCTTCTTGACCGAATCTGTAACCTTGATTAGCAGATTCATT 334478 Query 25797 CCCAGTTGTTTCAC-GAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATA 25855 | | ||||| | || || || | || |||| || || |||||| |||| Sbjct 334477 TTCTATGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCCATGTATAGCACTAAATA 334418 Query 25856 AAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGT 25915 | || |||||||| || || ||||| | ||| || || || |||||||| || || Sbjct 334417 GGGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGAAGT 334358 Query 25916 GTTCTGCCTGAAA 25928 | || ||||| || Sbjct 334357 GCTCAGCCTGGAA 334345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151993587365532