Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11]
7 sequences; 119,667,750 total letters
Query= NC_016659.1
Length=47536
Score E
Sequences producing significant alignments: (Bits) Value
seq7 535 1e-147
seq2 232 2e-56
seq6 223 1e-53
>seq7
Length=154478
Score = 535 bits (592), Expect = 1e-147
Identities = 718/999 (72%), Gaps = 0/999 (0%)
Strand=Plus/Plus
Query 25437 TGTAGACTCAGCAGATGCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAAC 25496
|| || |||| ||| |||| ||| |||||||||||||| || ||||| |||||||||||
Sbjct 398 TGGAGCCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAAC 457
Query 25497 TTCCATGCCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTT 25556
|||||| || | || |||||||||| ||| ||||||||||| | || | ||| |
Sbjct 458 TTCCATACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTG 517
Query 25557 GGAATCAACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGAC 25616
|||||| ||||| || ||||| || || || || || || ||||||||||| |
Sbjct 518 ACTATCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAAT 577
Query 25617 TCCCATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACT 25676
|| | ||| |||| ||| || | || |||||||| || | |||||||||||||
Sbjct 578 ACCTAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGA 637
Query 25677 ACGGCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGC 25736
||| ||| || || |||||||| ||||| || | || ||||| || || ||||| ||
Sbjct 638 ACGAGAATTGTTGAAACTAGCATATTGGAAAATCAATCGGCCAAAATAACCGTGAGCAGC 697
Query 25737 AACAATGTTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAG 25796
|||||||| || || ||||||||||| |||||| | || || | || |||||||
Sbjct 698 TACAATGTTGTAAGTTTCTTCTTCTTGCCCGAATCTGTAACCTTCATTAGCAGATTCATT 757
Query 25797 CCCAGTTGTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAA 25856
| || ||||| | || | ||||| || | || ||||||||| || |
Sbjct 758 TTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAAAAG 817
Query 25857 AGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTG 25916
| || |||||||| || || ||||| | ||| || || || |||||||| || |||||
Sbjct 818 GGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTG 877
Query 25917 TTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATC 25976
|| ||||| || |||| |||||| |||||||| || || || || ||||||||||||||
Sbjct 878 CTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATC 937
Query 25977 AGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGG 26036
||| ||||| || || |||| || |||| ||||| |||||| || |||||||||||
Sbjct 938 AGAAAAACTTCCCTGACCAATTGGATAGATCAAGAAAACAGCAGTCGCAGCTGCAACAGG 997
Query 26037 GGCTGAATAAGCTACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTG 26096
|||||||| || ||| ||||| || | ||| || || | ||||||||||||| |
Sbjct 998 AGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTC 1057
Query 26097 TCGTCCCAAGTAAGCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCC 26156
|| |||| ||| | | || | | |||||| | ||||| |||| ||| || ||
Sbjct 1058 ACGACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACC 1117
Query 26157 ACCGTTATACAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACC 26216
||||| || | ||| || || | || ||||||||||||||||||||| || || | ||
Sbjct 1118 GCCGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATTGGGTAAAAATGCAATCC 1177
Query 26217 GATTGCGTTAGATGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGC 26276
|| || ||| | || | || || || || || || |||||||| || || | |
Sbjct 1178 AATAGCTGCAGAAGTAGGAATAATGGCACCGGAAATAATATTGTTTCCGTAAAGAAGAGA 1237
Query 26277 TCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAAT 26336
||| || ||||| |||||||||||||| ||||| || ||||| ||||||| ||||| ||
Sbjct 1238 TCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGAT 1297
Query 26337 TAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCAC 26396
| ||| | | ||| || || | | ||||||||| | || |||||||| || |
Sbjct 1298 AATAAAAACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAAT 1357
Query 26397 ATAGAGGCGGTTGTTTGTACTTGTAACCCAGTCACATAA 26435
|| || ||||| | || || || | ||||| ||| ||
Sbjct 1358 GTAAAGACGGTTTTCAGTGCTAGTTATCCAGTTACAGAA 1396
>seq2
Length=19698289
Score = 232 bits (256), Expect = 2e-56
Identities = 347/493 (70%), Gaps = 10/493 (2%)
Strand=Plus/Plus
Query 25437 TGTAGACTCAGCAGATGCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAAC 25496
|| || |||| ||| |||| ||| |||||||||||||| || ||||| |||||||||||
Sbjct 3331582 TGGAGCCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAAC 3331641
Query 25497 TTCCATGCCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTT 25556
||| || || |||| |||||||||| ||| ||||||||||| | || | || |
Sbjct 3331642 TTCTATACCAAAGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGCCCTTG 3331701
Query 25557 GGAATCAACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGAC 25616
|||||| ||||| || ||||| || || || || || || |||||||||||| |
Sbjct 3331702 ACTATCAACTACTGATTGGTTGAAATTTAAACCATTTAGGTTGAAAGCCATAGTGCTAAT 3331761
Query 25617 TCCCATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACT 25676
|| | ||| |||| ||| || | || |||||||| || | |||||||||||||
Sbjct 3331762 ACCTAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGA 3331821
Query 25677 ACGGCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGC 25736
||| ||| || || | ||||||| | || ||||| || |||||||| ||
Sbjct 3331822 ACGAGAATTGTTGAAAC---------GGAAGATCAATCGGCCAAAATAACCATGAGCAGC 3331872
Query 25737 AACAATGTTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAG 25796
|||||||| || || | ||||||||| |||||| | || || | || |||||||
Sbjct 3331873 TACAATGTTGTAAGTTTATTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATT 3331932
Query 25797 CCCAGTTGTTTCAC-GAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATA 25855
| | ||||| | || || || | || |||| || || |||||| ||||
Sbjct 3331933 TTCTATGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCCATGTATAGCACTAAATA 3331992
Query 25856 AAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGT 25915
| || |||||||| || || ||||| | ||| || || || |||||||| || ||||
Sbjct 3331993 GGGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGT 3332052
Query 25916 GTTCTGCCTGAAA 25928
| || ||||| ||
Sbjct 3332053 GCTCAGCCTGGAA 3332065
>seq6
Length=366924
Score = 223 bits (246), Expect = 1e-53
Identities = 345/493 (70%), Gaps = 10/493 (2%)
Strand=Plus/Minus
Query 25437 TGTAGACTCAGCAGATGCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAAC 25496
|| || |||| ||| |||| ||| |||||||||||||| || ||||| |||||||||||
Sbjct 334828 TGGAGCCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAAC 334769
Query 25497 TTCCATGCCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTT 25556
||| || || |||| |||||||||| ||| ||||||||||| | || | || |
Sbjct 334768 TTCTATACCAAAGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGCCCTTG 334709
Query 25557 GGAATCAACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGAC 25616
|||||| ||||| || ||||| || || || || || || |||||||||||| |
Sbjct 334708 ACTATCAACTACTGATTGGTTGAAATTTAAACCATTTAGGTTGAAAGCCATAGTGCTAAT 334649
Query 25617 TCCCATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACT 25676
|| | ||| |||| ||| || | || |||||||| || | |||||||||||||
Sbjct 334648 ACCTAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGA 334589
Query 25677 ACGGCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGC 25736
||| ||| || || | ||||||| | || ||||| || |||||||| ||
Sbjct 334588 ACGAGAATTGTTGAAAC---------GGAAGATCAATCGGCCAAAATAACCATGAGCAGC 334538
Query 25737 AACAATGTTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAG 25796
|||||||| || || | ||||||||| |||||| | || || | || |||||||
Sbjct 334537 TACAATGTTGTAAGTTTATTCTTCTTGACCGAATCTGTAACCTTGATTAGCAGATTCATT 334478
Query 25797 CCCAGTTGTTTCAC-GAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATA 25855
| | ||||| | || || || | || |||| || || |||||| ||||
Sbjct 334477 TTCTATGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCCATGTATAGCACTAAATA 334418
Query 25856 AAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGT 25915
| || |||||||| || || ||||| | ||| || || || |||||||| || ||
Sbjct 334417 GGGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGAAGT 334358
Query 25916 GTTCTGCCTGAAA 25928
| || ||||| ||
Sbjct 334357 GCTCAGCCTGGAA 334345
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 151993587365532
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |