Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11]
7 sequences; 119,667,750 total letters
Query= NC_016924.1
Length=185139
Score E
Sequences producing significant alignments: (Bits) Value
seq5 145 9e-30
seq3 111 2e-19
>seq5
Length=26975502
Score = 145 bits (160), Expect = 9e-30
Identities = 353/529 (67%), Gaps = 12/529 (2%)
Strand=Plus/Minus
Query 37173 AAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTT 37232
||||| || |||||||| || | |||||| ||||| |||||||| || ||||| ||
Sbjct 16408798 AAACAAGCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTTGAAAAAGTG 16408739
Query 37233 AATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGAT-CCAGAAAA 37291
| ||| ||||||||||||| ||| || | ||| ||||| | |||||| | || || ||
Sbjct 16408738 AGTCCAGGCATTAAACCTCGTTTCTTCAACCAGAATATCGAA-CAAAAGCTACCGGAGAA 16408680
Query 37292 GAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATC 37351
||| ||||||||||| ||||| ||||| | | | |||| || | |||
Sbjct 16408679 GAATATACCTTCAACGCAAGCAAACGCTACGATTCTCTCAGCGAAGCTT----TGAGATC 16408624
Query 37352 AG-AAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTG 37410
| |||||||| | | ||| ||||| ||| || |||| ||| ||||| ||||
Sbjct 16408623 CGTTGATCCATTTCATAGCCCATTCTGCTTTT--TTCGTCACAAGGAATGGTTTCGATTG 16408566
Query 37411 CTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTAT 37470
| || ||| | | | |||| | ||| | ||||| || || | || | |||||
Sbjct 16408565 CACGAAAAAGATGATCTCTCTCTTTGTTGTCTTTGATATACGTGTCGAGAAGGAGACTAT 16408506
Query 37471 ACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAG 37530
|||| || ||||||||||| ||||| || || || || || || || | |||||| |
Sbjct 16408505 ACATCTCGGAGTGAATATTCTCAATCGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTG 16408446
Query 37531 ATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAG 37590
| | ||||||||| | || || | | | || || ||| || || || |
Sbjct 16408445 AGATCTGAACATCGGACATGAATCTAGTTGAGAGATTCTCGAGAACGATTCCGTCTGATG 16408386
Query 37591 CTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATA---ATTTTT 37647
| || ||||| || || || | ||| || || || | ||| || || | || | ||||
Sbjct 16408385 CGGCGAAGAAGGCGAGGACGTGTTTAATGAAGTGACGTTCGTCGTTGGTTAGTGAGTTTT 16408326
Query 37648 TCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAA 37696
||| || | | |||| || | ||| ||||| || | ||||| ||
Sbjct 16408325 CCCAGTCGCGATTGTCTTGAGAGAGATCGACTTCTTCGGCTGTCCAGAA 16408277
>seq3
Length=23459830
Score = 111 bits (122), Expect = 2e-19
Identities = 207/302 (69%), Gaps = 3/302 (1%)
Strand=Plus/Plus
Query 37398 ATTGTTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCA 37457
||||||||||| || |||||| | | | |||| ||||| | |||||||||||
Sbjct 9980645 ATTGTTTCAATGGCACGAAAGAGATGATCTCTCTCTTTGTTATCTTTGATATAAGTATCG 9980704
Query 37458 ATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAA 37517
| || | ||||||||| || ||||| || |||||||| || ||||| ||||| || |||
Sbjct 9980705 AGAAGGAGACTATACATCTCCGAGTGGATGTTTTCAATCGCGATCTGGAAACCGTAGAAA 9980764
Query 37518 CACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACT 37577
| || ||||| | |||||||||| | || | ||| | || || ||
Sbjct 9980765 GCACGCGCCTCAGAGACTTGAACATCGGACATGAAGCGAGAAGCGAGATTCTCTAGTACG 9980824
Query 37578 ATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAT-- 37635
|| || ||| || || |||||||| || || | ||| || || || | |||| | |
Sbjct 9980825 ATTCCGTCAGATGCAGCGAAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTCACCGTCG 9980884
Query 37636 TTGATAAT-TTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAA 37694
|||| | | |||| ||| || | |||| ||||| ||| ||||| || |||||||
Sbjct 9980885 TTGAGACTGTTTTCCCAGTCGCGGTTGTCTTGTGATAGATCTACTTCTTCGGCGGTCCAG 9980944
Query 37695 AA 37696
||
Sbjct 9980945 AA 9980946
Score = 89.7 bits (98), Expect = 6e-13
Identities = 103/136 (76%), Gaps = 2/136 (1%)
Strand=Plus/Plus
Query 37172 TAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGT 37231
|| ||| || |||||||| ||||||||||| || | |||||||| || || || ||
Sbjct 9980334 TAGACAAGCGAAATCACAGTGTAAACCTTCGTCACGTGAGATCAATTCGTTTGAGAATGT 9980393
Query 37232 TAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAG-ATCCAGAAA 37290
|||||| ||||| | |||| ||| || | ||| || |||| |||||| ||| || |
Sbjct 9980394 TAATCCAGGCATGAGTCCTCGTTTCTTCAGCCAGAAGATTG-AACAAAAGCTTCCGGAGA 9980452
Query 37291 AGAAAATACCTTCAAC 37306
|||| |||||||||||
Sbjct 9980453 AGAAGATACCTTCAAC 9980468
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 592316748172280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |