Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq5 145 9e-30 seq3 111 2e-19 >seq5 Length=26975502 Score = 145 bits (160), Expect = 9e-30 Identities = 353/529 (67%), Gaps = 12/529 (2%) Strand=Plus/Minus Query 37173 AAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTT 37232 ||||| || |||||||| || | |||||| ||||| |||||||| || ||||| || Sbjct 16408798 AAACAAGCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTTGAAAAAGTG 16408739 Query 37233 AATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGAT-CCAGAAAA 37291 | ||| ||||||||||||| ||| || | ||| ||||| | |||||| | || || || Sbjct 16408738 AGTCCAGGCATTAAACCTCGTTTCTTCAACCAGAATATCGAA-CAAAAGCTACCGGAGAA 16408680 Query 37292 GAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATC 37351 ||| ||||||||||| ||||| ||||| | | | |||| || | ||| Sbjct 16408679 GAATATACCTTCAACGCAAGCAAACGCTACGATTCTCTCAGCGAAGCTT----TGAGATC 16408624 Query 37352 AG-AAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTG 37410 | |||||||| | | ||| ||||| ||| || |||| ||| ||||| |||| Sbjct 16408623 CGTTGATCCATTTCATAGCCCATTCTGCTTTT--TTCGTCACAAGGAATGGTTTCGATTG 16408566 Query 37411 CTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTAT 37470 | || ||| | | | |||| | ||| | ||||| || || | || | ||||| Sbjct 16408565 CACGAAAAAGATGATCTCTCTCTTTGTTGTCTTTGATATACGTGTCGAGAAGGAGACTAT 16408506 Query 37471 ACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAG 37530 |||| || ||||||||||| ||||| || || || || || || || | |||||| | Sbjct 16408505 ACATCTCGGAGTGAATATTCTCAATCGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTG 16408446 Query 37531 ATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAG 37590 | | ||||||||| | || || | | | || || ||| || || || | Sbjct 16408445 AGATCTGAACATCGGACATGAATCTAGTTGAGAGATTCTCGAGAACGATTCCGTCTGATG 16408386 Query 37591 CTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATA---ATTTTT 37647 | || ||||| || || || | ||| || || || | ||| || || | || | |||| Sbjct 16408385 CGGCGAAGAAGGCGAGGACGTGTTTAATGAAGTGACGTTCGTCGTTGGTTAGTGAGTTTT 16408326 Query 37648 TCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAA 37696 ||| || | | |||| || | ||| ||||| || | ||||| || Sbjct 16408325 CCCAGTCGCGATTGTCTTGAGAGAGATCGACTTCTTCGGCTGTCCAGAA 16408277 >seq3 Length=23459830 Score = 111 bits (122), Expect = 2e-19 Identities = 207/302 (69%), Gaps = 3/302 (1%) Strand=Plus/Plus Query 37398 ATTGTTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCA 37457 ||||||||||| || |||||| | | | |||| ||||| | ||||||||||| Sbjct 9980645 ATTGTTTCAATGGCACGAAAGAGATGATCTCTCTCTTTGTTATCTTTGATATAAGTATCG 9980704 Query 37458 ATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAA 37517 | || | ||||||||| || ||||| || |||||||| || ||||| ||||| || ||| Sbjct 9980705 AGAAGGAGACTATACATCTCCGAGTGGATGTTTTCAATCGCGATCTGGAAACCGTAGAAA 9980764 Query 37518 CACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACT 37577 | || ||||| | |||||||||| | || | ||| | || || || Sbjct 9980765 GCACGCGCCTCAGAGACTTGAACATCGGACATGAAGCGAGAAGCGAGATTCTCTAGTACG 9980824 Query 37578 ATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAT-- 37635 || || ||| || || |||||||| || || | ||| || || || | |||| | | Sbjct 9980825 ATTCCGTCAGATGCAGCGAAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTCACCGTCG 9980884 Query 37636 TTGATAAT-TTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAA 37694 |||| | | |||| ||| || | |||| ||||| ||| ||||| || ||||||| Sbjct 9980885 TTGAGACTGTTTTCCCAGTCGCGGTTGTCTTGTGATAGATCTACTTCTTCGGCGGTCCAG 9980944 Query 37695 AA 37696 || Sbjct 9980945 AA 9980946 Score = 89.7 bits (98), Expect = 6e-13 Identities = 103/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 37172 TAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGT 37231 || ||| || |||||||| ||||||||||| || | |||||||| || || || || Sbjct 9980334 TAGACAAGCGAAATCACAGTGTAAACCTTCGTCACGTGAGATCAATTCGTTTGAGAATGT 9980393 Query 37232 TAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAG-ATCCAGAAA 37290 |||||| ||||| | |||| ||| || | ||| || |||| |||||| ||| || | Sbjct 9980394 TAATCCAGGCATGAGTCCTCGTTTCTTCAGCCAGAAGATTG-AACAAAAGCTTCCGGAGA 9980452 Query 37291 AGAAAATACCTTCAAC 37306 |||| ||||||||||| Sbjct 9980453 AGAAGATACCTTCAAC 9980468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592316748172280