Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11]
7 sequences; 119,667,750 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq5 116 3e-21
seq1 116 3e-21
seq4 96.9 3e-15
>seq5
Length=26975502
Score = 116 bits (128), Expect = 3e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
|| || || || || | ||||||||| || || ||| |||||||| ||||| ||||
Sbjct 772442 CCACCTCTGAGACGAAGCACCAAATGAAGGGTCGACTCCTTTTGAATGTTGTAGTCAGCA 772501
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
||| ||| |||| || | ||||||||||||||| || |||| ||| ||||||| ||
Sbjct 772502 AGAGTTCTTCCGTCTTCAAGCTGCTTACCGGCAAAGATAAGTCTCTGCTGATCCGGAGGG 772561
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719
| || |||||||| |||||| ||| || | | || || || ||| |||
Sbjct 772562 ATTCCTTCCTTGTCCTGGATCTTTGCTTTGACGTTGTCAATAGTGTCAGAGCTCTCAACC 772621
Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|||| ||||| || || || |||| ||| || ||||| || |||||
Sbjct 772622 TCCAAAGTAATGGTCTTGCCAGTCAGAGTCTTGACAAAGATTTGCAT 772668
Score = 107 bits (118), Expect = 1e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
|| || || || || | ||||||||| || || ||||||||| || ||||||||||
Sbjct 6973781 CCACCTCTCAGACGAAGCACCAAATGAAGGGTTGACTCTTTTTGGATGTTGTAATCAGCA 6973840
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
||| | ||| | || || | ||||||||||||||| || || | ||| || |||| ||
Sbjct 6973841 AGAGTGCGACCATCCTCTAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGGTCCGGTGGG 6973900
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719
| ||||| || || ||||| ||| ||| | | | ||||| ||| |||
Sbjct 6973901 ATTCCCTCTTTATCTTGGATCTTAGCTTTGACATTGTCAATGGTGTCTGAGCTCTCAACC 6973960
Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| | || || ||||| ||||||| ||| || ||||| || |||||
Sbjct 6973961 TCAAGGGTGATTGTTTTACCCGTCAGAGTCTTCACAAAGATTTGCAT 6974007
Score = 98.7 bits (108), Expect = 8e-16
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617
||||| || || || ||||| || || |||||||| | ||| | ||| | |||||
Sbjct 14953308 ACCAAGTGGAGAGTTGATTCTTTCTGGATGTTGTAATCTGCAAGAGTGCGACCATCGTCA 14953367
Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677
| ||| ||||| ||||| || |||| ||||||||||| || || || ||||||||
Sbjct 14953368 AGCTGTTTACCAGCAAAGATTAGTCTCTGTTGATCCGGAGGGACTCCTTCCTTGTCTTGG 14953427
Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737
||||| ||| ||| | | || ||||| ||| || || | ||||| |||||
Sbjct 14953428 ATCTTAGCTTTAACATTGTCAATAGTGTCTGAACTCTCAACTTCAAGGGTAATGGTTTTA 14953487
Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || | || || ||||| ||||||||
Sbjct 14953488 CCGGTAAGCGTCTTGACAAATATCTGCAT 14953516
Score = 96.9 bits (106), Expect = 3e-15
Identities = 152/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| || | ||| | ||| || || ||| ||||| || |||||||||| || | ||
Sbjct 6973562 AGACGAAGCACAAGATGGAGGGTAGACTCCTTTTGGATGTTGTAATCAGCGAGTGTGCGT 6973621
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || || | ||| || || |||||||| |||| ||| ||||| | |||| || |||
Sbjct 6973622 CCATCTTCAAGCTGTTTTCCAGCAAATATGAGTCTCTGCTGATCTGGTGGAATCCCTTCC 6973681
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| ||||||| || ||| | | | | ||||| ||| ||||||| ||
Sbjct 6973682 TTGTCTTGAATCTTTGCCTTGACATTATCGATTGTGTCTGAGCTCTCAACCTCCAAAGTG 6973741
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || || || || || || || ||||||||||||||
Sbjct 6973742 ATAGTCTTGCCAGTTAAGGTCTTCACAAAAATCTGCAT 6973779
>seq1
Length=30427671
Score = 116 bits (128), Expect = 3e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
|| || || || || | ||||||||| || ||| ||| ||||| || ||||||||||
Sbjct 24277049 CCACCTCTGAGACGAAGCACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCAGCG 24277108
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
|| | ||| |||| || | ||||||||||||||| || || | ||| ||||||| ||
Sbjct 24277109 AGTGTGCGACCGTCTTCAAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGATCCGGAGGG 24277168
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719
| || ||||| || ||||| || ||| | | || || || || |||
Sbjct 24277169 ATTCCTTCCTTATCCTGGATCTTAGCCTTAACATTGTCAATAGTATCAGAACTTTCAACC 24277228
Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|||| || || ||||| || |||||||| || ||||||||||||||
Sbjct 24277229 TCCAAAGTGATGGTTTTGCCTGTCAAAGTCTTGACAAAAATCTGCAT 24277275
Score = 93.3 bits (102), Expect = 3e-14
Identities = 156/222 (70%), Gaps = 8/222 (4%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGA---CTT 48605
|| ||||| || | || || || |||||| || || |||||||||| | | |||
Sbjct 24276605 AGACGCAATACAAGGTGAAGAGTAGACTCTTTCTGGATGTTGTAATCAGCCAAAGTCCTT 24276664
Query 48606 CGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCG-TGGGAACGCC 48664
| ||| ||| | ||| ||||| ||||| || |||| |||||| || | ||||| | |
Sbjct 24276665 CCATCCTCG---AGCTGTTTACCAGCAAAGATGAGTCTCTGTTGGTCTGGTGGGATC-CA 24276720
Query 48665 CTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCAC 48724
||||| || |||||| ||| ||| | | | | ||||| ||| |||||||
Sbjct 24276721 TTCCTTATCCTGAATCTTAGCTTTGACATTATCAATTGTGTCTGAGCTCTCAACCTCCAA 24276780
Query 48725 CGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
||||| || || || ||||||||||| ||||| || |||||
Sbjct 24276781 GGTAATGGTCTTGCCTGTCAAAGTTTTCACAAAGATTTGCAT 24276822
Score = 91.5 bits (100), Expect = 1e-13
Identities = 136/193 (70%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634
|||||| || || |||||||| | || | | ||| | || || |||||| || |||||
Sbjct 20550180 CTCTTTCTGGATGTTGTAATCCGCTAAAGTGCGACCATCTTCATGCTGCTTGCCTGCAAA 20550121
Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694
|| |||| |||||| || | | || || || ||||| ||||||| || |||
Sbjct 20550120 GATGAGTCTCTGTTGGTCTGGTGAAATCCCTTCTTTGTCCTGAATCTTTGCCTTCACATT 20550061
Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754
| | | || || ||||| || | ||| || || |||||||||||||| |||||
Sbjct 20550060 GTCAATCGTATCAGAGCTTTCCACTTCAAGCGTGATGGTCTTTCCCGTCAAAGTCTTTAC 20550001
Query 48755 AAAAATCTGCATC 48767
||||||||||||
Sbjct 20550000 GAAAATCTGCATC 20549988
>seq4
Length=18585056
Score = 96.9 bits (106), Expect = 3e-15
Identities = 152/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| ||||||||||| || || || ||| || ||||| ||||| |||| | | ||| |
Sbjct 1278991 AGACGCAACACCAAGTGAAGTGTAGACTCCTTCTGAATGTTGTAGTCAGCCAAAGTTCTA 1279050
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || || | || || ||||| || |||| || ||| || |||| || | |||||
Sbjct 1279051 CCATCTTCAAGTTGTTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGTGGGATACCCTCT 1279110
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| ||||| ||| ||| | | || || || ||||||||||| ||
Sbjct 1279111 TTGTCCTGGATCTTGGCTTTGACATTGTCGATAGTGTCAGAGCTCTCCACCTCCAAAGTG 1279170
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || ||||| ||||| || || ||||| ||||||||
Sbjct 1279171 ATAGTCTTTCCAGTCAACGTCTTGACAAAGATCTGCAT 1279208
Score = 87.8 bits (96), Expect = 1e-12
Identities = 150/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| ||||| ||||| || || ||| ||| || ||||| ||||| || | | | |||
Sbjct 2719232 AGACGCAAGACCAAGTGGAGTGTGGACTCCTTCTGAATGTTGTAGTCGGCCAAAGTTCTG 2719173
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || || | || || ||||| || |||| || ||| || |||| |||| |||||
Sbjct 2719172 CCATCTTCAAGTTGTTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGAGGAATACCCTCT 2719113
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| ||||| ||| || | | | | || || ||||||||||| ||
Sbjct 2719112 TTGTCTTGGATCTTGGCTTTCACGTTATCAATGGTGTCAGAACTCTCCACCTCCAAAGTG 2719053
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| ||||| || ||||| || || || |||||||||||
Sbjct 2719052 ATAGTTTTCCCAGTCAACGTCTTAACGAAAATCTGCAT 2719015
Score = 82.4 bits (90), Expect = 6e-11
Identities = 149/218 (68%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| ||||| ||||| || || ||| ||| || ||||| ||||| |||| | | |||
Sbjct 2719460 AGACGCAAGACCAAGTGAAGTGTGGACTCCTTCTGAATGTTGTAGTCAGCCAAAGTTCTT 2719401
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || || | ||||| ||||| || |||| || ||| || |||| || | |||||
Sbjct 2719400 CCATCTTCAAGTTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGTGGGATACCCTCT 2719341
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| ||||| ||| || | | | | || || ||||||||||| ||
Sbjct 2719340 TTGTCCTGGATCTTGGCTTTCACGTTATCAATGGTGTCAGAACTCTCCACCTCCAAAGTG 2719281
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || ||||| || | ||| || || || ||||||||
Sbjct 2719280 ATGGTCTTTCCGGTGAGAGTCTTCACGAAGATCTGCAT 2719243
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380937567501261
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