Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq5 116 3e-21 seq1 116 3e-21 seq4 96.9 3e-15 >seq5 Length=26975502 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || || | ||||||||| || || ||| |||||||| ||||| |||| Sbjct 772442 CCACCTCTGAGACGAAGCACCAAATGAAGGGTCGACTCCTTTTGAATGTTGTAGTCAGCA 772501 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| ||| |||| || | ||||||||||||||| || |||| ||| ||||||| || Sbjct 772502 AGAGTTCTTCCGTCTTCAAGCTGCTTACCGGCAAAGATAAGTCTCTGCTGATCCGGAGGG 772561 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || |||||||| |||||| ||| || | | || || || ||| ||| Sbjct 772562 ATTCCTTCCTTGTCCTGGATCTTTGCTTTGACGTTGTCAATAGTGTCAGAGCTCTCAACC 772621 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| ||||| || || || |||| ||| || ||||| || ||||| Sbjct 772622 TCCAAAGTAATGGTCTTGCCAGTCAGAGTCTTGACAAAGATTTGCAT 772668 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || || | ||||||||| || || ||||||||| || |||||||||| Sbjct 6973781 CCACCTCTCAGACGAAGCACCAAATGAAGGGTTGACTCTTTTTGGATGTTGTAATCAGCA 6973840 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | ||| | || || | ||||||||||||||| || || | ||| || |||| || Sbjct 6973841 AGAGTGCGACCATCCTCTAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGGTCCGGTGGG 6973900 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||| || || ||||| ||| ||| | | | ||||| ||| ||| Sbjct 6973901 ATTCCCTCTTTATCTTGGATCTTAGCTTTGACATTGTCAATGGTGTCTGAGCTCTCAACC 6973960 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || ||||| ||||||| ||| || ||||| || ||||| Sbjct 6973961 TCAAGGGTGATTGTTTTACCCGTCAGAGTCTTCACAAAGATTTGCAT 6974007 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || ||||| || || |||||||| | ||| | ||| | ||||| Sbjct 14953308 ACCAAGTGGAGAGTTGATTCTTTCTGGATGTTGTAATCTGCAAGAGTGCGACCATCGTCA 14953367 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | ||| ||||| ||||| || |||| ||||||||||| || || || |||||||| Sbjct 14953368 AGCTGTTTACCAGCAAAGATTAGTCTCTGTTGATCCGGAGGGACTCCTTCCTTGTCTTGG 14953427 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| ||| ||| | | || ||||| ||| || || | ||||| ||||| Sbjct 14953428 ATCTTAGCTTTAACATTGTCAATAGTGTCTGAACTCTCAACTTCAAGGGTAATGGTTTTA 14953487 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | || || ||||| |||||||| Sbjct 14953488 CCGGTAAGCGTCTTGACAAATATCTGCAT 14953516 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||| | ||| || || ||| ||||| || |||||||||| || | || Sbjct 6973562 AGACGAAGCACAAGATGGAGGGTAGACTCCTTTTGGATGTTGTAATCAGCGAGTGTGCGT 6973621 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | ||| || || |||||||| |||| ||| ||||| | |||| || ||| Sbjct 6973622 CCATCTTCAAGCTGTTTTCCAGCAAATATGAGTCTCTGCTGATCTGGTGGAATCCCTTCC 6973681 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||||| || ||| | | | | ||||| ||| ||||||| || Sbjct 6973682 TTGTCTTGAATCTTTGCCTTGACATTATCGATTGTGTCTGAGCTCTCAACCTCCAAAGTG 6973741 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || || || || |||||||||||||| Sbjct 6973742 ATAGTCTTGCCAGTTAAGGTCTTCACAAAAATCTGCAT 6973779 >seq1 Length=30427671 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || || | ||||||||| || ||| ||| ||||| || |||||||||| Sbjct 24277049 CCACCTCTGAGACGAAGCACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCAGCG 24277108 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | ||| |||| || | ||||||||||||||| || || | ||| ||||||| || Sbjct 24277109 AGTGTGCGACCGTCTTCAAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGATCCGGAGGG 24277168 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || ||||| || ||||| || ||| | | || || || || ||| Sbjct 24277169 ATTCCTTCCTTATCCTGGATCTTAGCCTTAACATTGTCAATAGTATCAGAACTTTCAACC 24277228 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || ||||| || |||||||| || |||||||||||||| Sbjct 24277229 TCCAAAGTGATGGTTTTGCCTGTCAAAGTCTTGACAAAAATCTGCAT 24277275 Score = 93.3 bits (102), Expect = 3e-14 Identities = 156/222 (70%), Gaps = 8/222 (4%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGA---CTT 48605 || ||||| || | || || || |||||| || || |||||||||| | | ||| Sbjct 24276605 AGACGCAATACAAGGTGAAGAGTAGACTCTTTCTGGATGTTGTAATCAGCCAAAGTCCTT 24276664 Query 48606 CGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCG-TGGGAACGCC 48664 | ||| ||| | ||| ||||| ||||| || |||| |||||| || | ||||| | | Sbjct 24276665 CCATCCTCG---AGCTGTTTACCAGCAAAGATGAGTCTCTGTTGGTCTGGTGGGATC-CA 24276720 Query 48665 CTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCAC 48724 ||||| || |||||| ||| ||| | | | | ||||| ||| ||||||| Sbjct 24276721 TTCCTTATCCTGAATCTTAGCTTTGACATTATCAATTGTGTCTGAGCTCTCAACCTCCAA 24276780 Query 48725 CGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || || ||||||||||| ||||| || ||||| Sbjct 24276781 GGTAATGGTCTTGCCTGTCAAAGTTTTCACAAAGATTTGCAT 24276822 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 |||||| || || |||||||| | || | | ||| | || || |||||| || ||||| Sbjct 20550180 CTCTTTCTGGATGTTGTAATCCGCTAAAGTGCGACCATCTTCATGCTGCTTGCCTGCAAA 20550121 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || |||| |||||| || | | || || || ||||| ||||||| || ||| Sbjct 20550120 GATGAGTCTCTGTTGGTCTGGTGAAATCCCTTCTTTGTCCTGAATCTTTGCCTTCACATT 20550061 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || || ||||| || | ||| || || |||||||||||||| ||||| Sbjct 20550060 GTCAATCGTATCAGAGCTTTCCACTTCAAGCGTGATGGTCTTTCCCGTCAAAGTCTTTAC 20550001 Query 48755 AAAAATCTGCATC 48767 |||||||||||| Sbjct 20550000 GAAAATCTGCATC 20549988 >seq4 Length=18585056 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||||||||| || || || ||| || ||||| ||||| |||| | | ||| | Sbjct 1278991 AGACGCAACACCAAGTGAAGTGTAGACTCCTTCTGAATGTTGTAGTCAGCCAAAGTTCTA 1279050 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | || || ||||| || |||| || ||| || |||| || | ||||| Sbjct 1279051 CCATCTTCAAGTTGTTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGTGGGATACCCTCT 1279110 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| ||| ||| | | || || || ||||||||||| || Sbjct 1279111 TTGTCCTGGATCTTGGCTTTGACATTGTCGATAGTGTCAGAGCTCTCCACCTCCAAAGTG 1279170 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| ||||| || || ||||| |||||||| Sbjct 1279171 ATAGTCTTTCCAGTCAACGTCTTGACAAAGATCTGCAT 1279208 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| ||||| || || ||| ||| || ||||| ||||| || | | | ||| Sbjct 2719232 AGACGCAAGACCAAGTGGAGTGTGGACTCCTTCTGAATGTTGTAGTCGGCCAAAGTTCTG 2719173 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | || || ||||| || |||| || ||| || |||| |||| ||||| Sbjct 2719172 CCATCTTCAAGTTGTTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGAGGAATACCCTCT 2719113 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| ||| || | | | | || || ||||||||||| || Sbjct 2719112 TTGTCTTGGATCTTGGCTTTCACGTTATCAATGGTGTCAGAACTCTCCACCTCCAAAGTG 2719053 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || ||||| || || || ||||||||||| Sbjct 2719052 ATAGTTTTCCCAGTCAACGTCTTAACGAAAATCTGCAT 2719015 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| ||||| || || ||| ||| || ||||| ||||| |||| | | ||| Sbjct 2719460 AGACGCAAGACCAAGTGAAGTGTGGACTCCTTCTGAATGTTGTAGTCAGCCAAAGTTCTT 2719401 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | ||||| ||||| || |||| || ||| || |||| || | ||||| Sbjct 2719400 CCATCTTCAAGTTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGTGGGATACCCTCT 2719341 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| ||| || | | | | || || ||||||||||| || Sbjct 2719340 TTGTCCTGGATCTTGGCTTTCACGTTATCAATGGTGTCAGAACTCTCCACCTCCAAAGTG 2719281 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| || | ||| || || || |||||||| Sbjct 2719280 ATGGTCTTTCCGGTGAGAGTCTTCACGAAGATCTGCAT 2719243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380937567501261