Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq1 87.8 4e-12 >seq1 Length=30427671 Score = 87.8 bits (96), Expect = 4e-12 Identities = 139/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 150364 GATTCTTTCTCGTAAAACCAAAAAGAATGGTGCGTTAGTTGGTGAACCAGGTGTTGGTAA 150423 ||||||||| | | ||| || || ||| || | | |||| || ||||| |||||||| Sbjct 27939284 GATTCTTTCGAGGAGAACGAAGAACAATCCTGTGCTTATTGGAGAGCCAGGAGTTGGTAA 27939225 Query 150424 AACACAAATCGTTGACGGATTAGCACAACGCATCGCTAATGGTGATGTTCCAGATTCTAT 150483 |||| | ||||| || ||||||||| | || | || || ||||| || | | | Sbjct 27939224 AACAGCTGTGGTTGAAGGTTTAGCACAAAGGATTGTGAAAGGAGATGTGCCCAACAGTCT 27939165 Query 150484 GAAAGATGTTGAAATT-CTTTCTTTGAATATGGGTGCATTTACTGCTGGTACTAAGTATC 150542 | |||| ||| ||| |||| ||| | |||||||| || ||||||| |||| || | Sbjct 27939164 TACTGATG-TGAGATTAATTTCGTTGGACATGGGTGCGTTAGTTGCTGGTGCTAAATACC 27939106 Query 150543 GTGGTGAATTCGAAGAA 150559 | || || || |||||| Sbjct 27939105 GAGGAGAGTTTGAAGAA 27939089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147590297075486