Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq7 587 8e-163 seq2 304 1e-77 seq6 295 7e-75 >seq7 Length=154478 Score = 587 bits (650), Expect = 8e-163 Identities = 706/957 (74%), Gaps = 12/957 (1%) Strand=Plus/Minus Query 162541 GGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATT 162600 || ||||| ||||| |||||||||||| ||| | | ||| | || || || || Sbjct 1354 GGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCTGTTTTTATTATC 1295 Query 162601 GCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCA 162660 ||||||||||| || |||||||| ||||| |||||||| | ||||||||| | || || Sbjct 1294 GCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCT 1235 Query 162661 CTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGT 162720 ||||| || || ||||| || || || ||||| | |||||| ||| |||||||| Sbjct 1234 CTTCTTTACGGAAACAATATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATTGGA 1175 Query 162721 CTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGA 162780 | || || || || ||||||||||| ||| | ||||||| ||| | || || || || Sbjct 1174 TTGCATTTTTACCCAATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGT 1115 Query 162781 CCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGT---GGTCGT 162837 |||| |||| | || | ||||| | | || | ||| | | | |||||| Sbjct 1114 CCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGT---AGCTTGTTATATGGGTCGT 1058 Query 162838 CAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCA 162897 ||||||||||| || ||| | ||||||||||||||||| ||||||||| || || Sbjct 1057 GAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCT 998 Query 162898 CCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCT 162957 || || | || || ||||| |||||| ||||||| | ||||| || ||| ||| Sbjct 997 CCTGTTGCAGCTGCGACTGCTGTTTTCTTGATCTATCCAATTGGTCAGGGAAGTTTTTCT 938 Query 162958 GACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAG 163017 || | |||||||| || || ||||||||||| |||| ||| | || ||||| || ||| Sbjct 937 GATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAG 878 Query 163018 CACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCA 163077 |||||||| || |||||||| || || ||| | || || || ||||||||||| || || Sbjct 877 CACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCC 818 Query 163078 CTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAG 163137 || |||||||||||||| ||||| | || |||||| | | ||||| ||||| || || Sbjct 817 CTTTTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAA 758 Query 163138 CAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTT 163197 | || || || | ||||| | ||||| ||||||||||| |||||||||||||| Sbjct 757 AATGAATCTGCTAATGAAGGTTACAGATTCGGGCAAGAAGAAGAAACTTACAACATTGTA 698 Query 163198 GCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGT 163257 |||||||| || || ||||| || ||||| ||||| ||||| ||||||||| || ||| Sbjct 697 GCTGCTCACGGTTATTTTGGCCGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCGT 638 Query 163258 TCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGT 163317 || | || |||||| | || || | || || || | || ||||| ||||| | ||| Sbjct 637 TCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGT 578 Query 163318 GTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGA---C 163374 | |||||||| |||||||| || |||||||| ||||||||||| || ||||| Sbjct 577 ATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGT 518 Query 163375 GCAGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATG 163434 ||| || || ||| ||||||||| ||||| ||||| | || ||||||||| Sbjct 517 CAAGGACGT---GTTATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATG 461 Query 163435 GAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCTGCTGAG 163491 ||||||||||| || |||||||||||||||||||| || ||||| ||||||| |||| Sbjct 460 GAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 404 >seq2 Length=19698289 Score = 304 bits (336), Expect = 1e-77 Identities = 362/490 (74%), Gaps = 16/490 (3%) Strand=Plus/Minus Query 163006 TTCCAAGCAGAGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTA 163065 ||||| || ||||||||||| || |||||||| || || ||| | || || || |||||| Sbjct 3332065 TTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 3332006 Query 163066 TTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCTCTTGTTA-CTTCTTCTCTTATCAG 163124 ||||| || || || ||||||||||| || || | |||| || ||||| | | ||||| Sbjct 3332005 TTCGGCGGCTCCCTATTTAGTGCTATACATGGGTTCCTTGGTAACTTCTAGTTTGATCAG 3331946 Query 163125 AGAAACTACTGAGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGAC 163184 ||||| | || | || || || | ||||| | ||||| ||||||||| | || Sbjct 3331945 GGAAACCATAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAATAAAC 3331886 Query 163185 TTACAACATTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTT 163244 |||||||||||| ||||||||||| || ||||| || |||||||||| ||| Sbjct 3331885 TTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCG---------TTT 3331835 Query 163245 CAACAACTCACGTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTT 163304 |||||| || ||||| | || |||||| | || || | || || || | || ||||| Sbjct 3331834 CAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTT 3331775 Query 163305 CACTGCAATGGGTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATC 163364 ||||| | ||| | |||||||| |||||||| || ||||| || ||||||||||| Sbjct 3331774 TACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTAAATTTCAACCAATC 3331715 Query 163365 CGTCGTTGACGC---AGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGC 163421 || ||||| ||| || || ||| ||||||||| ||||| ||||| | || Sbjct 3331714 AGTAGTTGATAGTCAAGGGCGT---GTTATTAATACTTGGGCTGATATTATTAACCGTGC 3331658 Query 163422 AGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGC 163481 ||||||| ||||||||||| || |||||||||||||||||||| || ||||| || Sbjct 3331657 TAACTTTGGTATAGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 3331598 Query 163482 TGCTGCTGAG 163491 ||||| |||| Sbjct 3331597 TGCTGTTGAG 3331588 >seq6 Length=366924 Score = 295 bits (326), Expect = 7e-75 Identities = 360/490 (73%), Gaps = 16/490 (3%) Strand=Plus/Plus Query 163006 TTCCAAGCAGAGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTA 163065 ||||| || |||||| ||| || |||||||| || || ||| | || || || |||||| Sbjct 334345 TTCCAGGCTGAGCACTTCATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 334404 Query 163066 TTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCTCTTGTTA-CTTCTTCTCTTATCAG 163124 ||||| || || || ||||||||||| || || | |||| || ||||| | | ||||| Sbjct 334405 TTCGGCGGCTCCCTATTTAGTGCTATACATGGGTTCCTTGGTAACTTCTAGTTTGATCAG 334464 Query 163125 AGAAACTACTGAGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGAC 163184 ||||| | || | || || || | ||||| | ||||| ||||||||| | || Sbjct 334465 GGAAACCATAGAAAATGAATCTGCTAATCAAGGTTACAGATTCGGTCAAGAAGAATAAAC 334524 Query 163185 TTACAACATTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTT 163244 |||||||||||| ||||||||||| || ||||| || |||||||||| ||| Sbjct 334525 TTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCG---------TTT 334575 Query 163245 CAACAACTCACGTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTT 163304 |||||| || ||||| | || |||||| | || || | || || || | || ||||| Sbjct 334576 CAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTT 334635 Query 163305 CACTGCAATGGGTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATC 163364 ||||| | ||| | |||||||| |||||||| || ||||| || ||||||||||| Sbjct 334636 TACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTAAATTTCAACCAATC 334695 Query 163365 CGTCGTTGACGC---AGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGC 163421 || ||||| ||| || || ||| ||||||||| ||||| ||||| | || Sbjct 334696 AGTAGTTGATAGTCAAGGGCGT---GTTATTAATACTTGGGCTGATATTATTAACCGTGC 334752 Query 163422 AGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGC 163481 ||||||| ||||||||||| || |||||||||||||||||||| || ||||| || Sbjct 334753 TAACTTTGGTATAGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 334812 Query 163482 TGCTGCTGAG 163491 ||||| |||| Sbjct 334813 TGCTGTTGAG 334822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553084751605080