Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq5 120 6e-22 seq3 95.1 2e-14 >seq5 Length=26975502 Score = 120 bits (132), Expect = 6e-22 Identities = 187/264 (71%), Gaps = 5/264 (2%) Strand=Plus/Minus Query 48425 TACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCA 48484 |||||||| ||||| | |||||| || ||||| ||||| ||||||||||| | || || Sbjct 16408506 TACATCTCGGAGTGAATATTCTCAATCGCGATTTGGAATCCGTAGAAGGCACGAGCTTCT 16408447 Query 48485 AACACCTGCACTTCTGTGGAGAATCT-CTCCAGCAGATTCTCATTGACTATCCCATCTGA 48543 | | ||| || || | |||||| | || |||||||| || || || ||||| Sbjct 16408446 GAGATCTGAACATCGGACATGAATCTAGTTGAG-AGATTCTCGAGAACGATTCCGTCTGA 16408388 Query 48544 AGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATT 48603 || || |||||||| ||||| ||||||| ||| || || |||| || ||| || | || Sbjct 16408387 TGCGGCGAAGAAGGCGAGGACGTGTTTAATGAAGTGACGTTCGTCGTTGGTTAGTGAGTT 16408328 Query 48604 ---CCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAG 48660 |||| | | ||||| || || |||||||| | ||||||||||| || Sbjct 16408327 TTCCCAGTCGCGATTGTCTTGAGAGAGATCGACTTCTTCGGCTGTCCAGAAGGATGCTTC 16408268 Query 48661 TGCTTTTTTGTACATGCCCCATAT 48684 ||||| |||||||| |||| || Sbjct 16408267 GGCTTTCTTGTACATCTCCCAAAT 16408244 >seq3 Length=23459830 Score = 95.1 bits (104), Expect = 2e-14 Identities = 188/275 (68%), Gaps = 5/275 (2%) Strand=Plus/Plus Query 48425 TACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCA 48484 |||||||| ||||| | || || || ||||||||||| |||||||| || | |||||| Sbjct 9980717 TACATCTCCGAGTGGATGTTTTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCA 9980776 Query 48485 AACACCTGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCCCATCTGA 48543 | || || || || | ||| | ||| |||||||| || || || || || Sbjct 9980777 GAGACTTGAACATCGGACATGAAGC-GAGAAGCGAGATTCTCTAGTACGATTCCGTCAGA 9980835 Query 48544 AGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATT 48603 ||||| ||||| || ||||| ||||| | ||| || || || || | ||||| || Sbjct 9980836 TGCAGCGAAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTCACCGTCGTTGAGACTGTT 9980895 Query 48604 ---CCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAG 48660 |||| | | ||||| || || |||||||| | |||||||| || || Sbjct 9980896 TTCCCAGTCGCGGTTGTCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAATGATGCTTC 9980955 Query 48661 TGCTTTTTTGTACATGCCCCATATGTCCGGATAGT 48695 |||||||||||||| |||| || | || |||| Sbjct 9980956 GGCTTTTTTGTACATTTCCCAGATCTGTGGGTAGT 9980990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931532718490880