Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11]
7 sequences; 119,667,750 total letters
Query= NC_019516.1
Length=161440
Score E
Sequences producing significant alignments: (Bits) Value
seq7 668 0.0
seq2 286 4e-72
seq6 277 2e-69
>seq7
Length=154478
Score = 668 bits (740), Expect = 0.0
Identities = 721/952 (76%), Gaps = 2/952 (0%)
Strand=Plus/Minus
Query 8290 GGCTGGTTTGGCGTTCTCATGATCCCAACCCTTCTTG-CCGCTACAATTTGCTTCATTAC 8348
|| |||||||| ||| | |||||||| ||| || ||| |||| || | || ||||
Sbjct 1354 GGATGGTTTGGTGTTTTGATGATCCCTACC-TTATTGACCGCAACTTCTGTTTTTATTAT 1296
Query 8349 CGCATTCGTTGCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCAGTTGCTGGATC 8408
||||||| ||||||||||||| || || || || || || || ||||| ||| |||||||
Sbjct 1295 CGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATC 1236
Query 8409 TCTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCAGCTCTAACGCAATTGG 8468
||| | ||||| ||||| || || || ||||| || |||| | ||| || |||||
Sbjct 1235 TCTTCTTTACGGAAACAATATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATTGG 1176
Query 8469 CCTCCACTTCTACCCCATCTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACAACGGTGG 8528
| || || ||||| ||||||||||| || || ||||||| ||||| |||||||| ||
Sbjct 1175 ATTGCATTTTTACCCAATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGG 1116
Query 8529 TCCTTACCAGCTTGTAGTTTTCCACTTCCTCCTTGGCGTCTTTGCTTATATGGGTCGTGA 8588
|||||| | || | ||| | ||||| | ||||| || | |||||||||||||||
Sbjct 1115 TCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGA 1056
Query 8589 ATGGGAACTTTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCTCC 8648
||||||||| || ||| || || |||||||||||||| ||||||||| || |||||
Sbjct 1055 GTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCC 996
Query 8649 TGTTGCCGCTGCTTCTGCTGTATTCCTTGTCTATCCTTTTGGTCAAGGTTCGTTCTCTGA 8708
|||||| ||||| ||||||| ||| | ||||||| ||||||| || || |||||
Sbjct 995 TGTTGCAGCTGCGACTGCTGTTTTCTTGATCTATCCAATTGGTCAGGGAAGTTTTTCTGA 936
Query 8709 TGGTATGCCTCTTGGTATCTCCGGTACGTTCAACTATATGCTTGTCTTCCAGGCTGAGCA 8768
|||||||||||| || ||||| ||||| ||||||| |||| |||| ||||||||||||||
Sbjct 935 TGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCA 876
Query 8769 CAACATCCTGATGCACCCCTTCCACATGCTTGGTGTTGCTGGTGTCTTCGGCGGATCTCT 8828
|||||| || |||||||| || |||||| | ||||| |||||||| |||||||| || ||
Sbjct 875 CAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCT 816
Query 8829 CTTTTCCGCAATGCATGGTTCACTCGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAC 8888
||| || ||||||||||| | || |||||| || | | || ||||| ||||
Sbjct 815 TTTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAA 756
Query 8889 CGAGTCTCAAAACTATGGCTACAAGTTCGGTCAAGAAGAGGAAACTTACAACATTGTTGC 8948
|| ||| || | || |||| ||||| |||||||| ||||||||||||||||| ||
Sbjct 755 TGAATCTGCTAATGAAGGTTACAGATTCGGGCAAGAAGAAGAAACTTACAACATTGTAGC 696
Query 8949 CGCTCATGGCTACTTTGGTCGCTTGATCTTCCAATATGCATCTTTTAACAATTCTAGAAG 9008
||||| || || ||||| || ||||| ||||||||||| ||| ||||||||| |
Sbjct 695 TGCTCACGGTTATTTTGGCCGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCGTTC 636
Query 9009 CTTGCATTTCTTCCTCGCTGCGTGGCCTGTGGTGGGAATCTGGTTTACCGCCCTCGGCGT 9068
|| ||||||||| | || || ||||| || || || || |||||||| || | || |
Sbjct 635 TTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTAT 576
Query 9069 CTCGACCATGGCTTTCAACCTCAATGGCTTCAACTTCAACCAGTCCATTATCGACGGACA 9128
|| |||||||||||||| ||||| ||||| |||||||| || | | || | ||
Sbjct 575 TAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCA 516
Query 9129 AGGACGAGTGCTCAACACCTGGGCAGACGTACTTAACCGCGCAGGACTCGGTATGGAAGT 9188
|||||| || | || || ||||| || | ||||||| || || |||||||||||
Sbjct 515 AGGACGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGT 456
Query 9189 CATGCACGAAAGAAACGCACACAACTTCCCGCTTGACCTTGCGGCTGCTGAG 9240
||||| ||| | || || ||||||||||| || ||||| || |||| ||||
Sbjct 455 TATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 404
Score = 583 bits (646), Expect = 1e-161
Identities = 728/998 (73%), Gaps = 0/998 (0%)
Strand=Plus/Plus
Query 9815 TTTGACATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGTTGGTCTGGA 9874
||||| || | ||||||||| | | || ||||| |||||||| |||||||||||
Sbjct 32756 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 32815
Query 9875 CTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGCACTACGTTT 9934
||| | || ||||| ||| ||| | || | || || ||| | || || || || |||
Sbjct 32816 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 32875
Query 9935 GTCACGAGTTGGTACACTCACGGACTTGCAAGTAGTTACCTTGAGGGTGCTAATTTCCTT 9994
|| || ||||| ||||| ||| | || ||| || | || ||| ||||| |
Sbjct 32876 GTAACTTCATGGTATACTCATGGATTGGCCAGTTCCTATTTAGAAGGTTGCAATTTTTTA 32935
Query 9995 ACAGCGGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGT 10054
|| || || || || || |||||| || | | | |||||| | | |||| ||||||
Sbjct 32936 ACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGT 32995
Query 10055 CCTGAGTCTCAGGGAGATTTCGTCCGCTGGATCCAGCTTGGGGGACTCTGGGCTTTTGTG 10114
||||| | || |||||||| || ||| || | || || || |||||||||||
Sbjct 32996 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTATGGGCTTTTGTT 33055
Query 10115 GCGCTCCACGGAGCCTTCGCTTTAATCGGCTTTATGTTACGCCAGTTTGAGCTGGCGAGA 10174
|| |||||||| || ||||| ||||| || ||||||||||| || ||||| || || ||
Sbjct 33056 GCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGA 33115
Query 10175 TTAATTGGAATCCGACCTTACAATGCTATCGCGTTTTCTGGGCCTATTGCTGTTTTTGTC 10234
| || | | |||||||| ||||| ||||| || ||||| || ||||||||||||||
Sbjct 33116 TCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCCATTGCTGTTTTTGTT 33175
Query 10235 AGTGTTTTCCTCATCTATCCACTCGGACAGTCTAGTTGGTTCTTTGCGCCGAGTTTCGGC 10294
||| ||||| || |||||||| || || ||| |||||||||||||||| ||||| ||
Sbjct 33176 TCTGTCTTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGT 33235
Query 10295 GTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAAT 10354
|| ||||| || || || ||| | ||||| |||| || |||||||||||||| | ||
Sbjct 33236 GTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAAC 33295
Query 10355 CCCTTCCATATGATGGGAGTTGCTGGTATACTGGGAGGGGCGCTCCTATCAGCAATCCAC 10414
|| || |||||||||||||| || ||| ||||||| | ||| || |||| || || ||
Sbjct 33296 CCATTTCATATGATGGGAGTCGCCGGTGTACTGGGCGCGGCTCTGCTATGCGCTATTCAT 33355
Query 10415 GGAGTCACTGTAGAAAACACACTTTATCAAGATGGCGAACAAGCAAACACTTTCAAAGCT 10474
|| | ||||||||||| || | | | ||||||| || ||||| || ||| |||
Sbjct 33356 GGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCT 33415
Query 10475 TTTGATAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTCC 10534
||| | ||||||| ||||| || ||||| ||||| || |||||||| || |||||
Sbjct 33416 TTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCA 33475
Query 10535 CAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGTA 10594
|| || ||||| |||||||| ||||||||| ||| | |||||||||||| | ||||||
Sbjct 33476 CAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTA 33535
Query 10595 CCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTTCGT 10654
|| || | ||| | |||| | || ||||| | | ||| | ||| | || || |||
Sbjct 33536 CCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTTTAGCTTTGAACCTACGT 33595
Query 10655 GCTTACGATTTTGTATCTCAAGAGATCAGGGCGTCAGAAGATCCTGAATTTGAGACGTTC 10714
|| || || || || || || || ||| | || | |||||||| ||||||||||| |||
Sbjct 33596 GCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCAGAATTTGAGACTTTC 33655
Query 10715 TATACGAAGAATATCCTTCTGAACGAAGGTCTTCGTGCATGGATGGCACCAGTTGACCAA 10774
||||| || ||||| ||| | ||||||||| ||||||| |||||||| | || ||
Sbjct 33656 TATACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAG 33715
Query 10775 CCACACGAAAGCTTTGTTTTCCCAGAAGAAGTTCTTCC 10812
|| || |||| | || | ||||| || || ||||| ||
Sbjct 33716 CCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACC 33753
>seq2
Length=19698289
Score = 286 bits (316), Expect = 4e-72
Identities = 373/514 (73%), Gaps = 13/514 (3%)
Strand=Plus/Minus
Query 8728 TCCGGTACGTTCAACTATATGCTTGTCTTCCAGGCTGAGCACAACATCCTGATGCACCCC 8787
|||||||||| | ||| ||| || | ||||||||||||||||||| || ||||||||
Sbjct 3332089 TCCGGTACGTGCTTCTA-ATGATTAT--TCCAGGCTGAGCACAACATTCTTATGCACCCA 3332033
Query 8788 TTCCACATGCTTGGTGTTGCTGGTGTCTTCGGCGGATCTCTCTTTTCCGCAATGCATGG- 8846
|| |||||| | ||||| |||||||| |||||||| || || ||| || || |||||
Sbjct 3332032 TTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATACATGGG 3331973
Query 8847 TTCACTCGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAACCGAGTCTCAAAACTATGG 8906
||| | || |||||| || | | || |||| |||| || ||| || | ||
Sbjct 3331972 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCATAGAAAATGAATCTGCTAATGAAGG 3331913
Query 8907 CTACAAGTTCGGTCAAGAAGAGGAAACTTACAACATTGTTGCCGCTCATGGCTACTTTGG 8966
|||| |||||||||||||| |||||||||||||||| || |||||||| || |||||
Sbjct 3331912 TTACAGATTCGGTCAAGAAGAATAAACTTACAACATTGTAGCTGCTCATGGTTATTTTGG 3331853
Query 8967 TCGCTTGATCTTCCAATATGCATCTTTTAACAATTCTAGAAGCTTGCATTTCTTCCTCGC 9026
|| |||||||||| ||| ||||||||| | || ||||||||| | ||
Sbjct 3331852 CCGATTGATCTTCCG---------TTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGC 3331802
Query 9027 TGCGTGGCCTGTGGTGGGAATCTGGTTTACCGCCCTCGGCGTCTCGACCATGGCTTTCAA 9086
|| ||||| || || || || |||||||| || | || | || |||||||||||
Sbjct 3331801 GGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAA 3331742
Query 9087 CCTCAATGGCTTCAACTTCAACCAGTCCATTATCGACGGACAAGGACGAGTGCTCAACAC 9146
||| ||||| || || |||||||| || | | || | ||||| || || | || ||
Sbjct 3331741 CCTAAATGGTTTAAATTTCAACCAATCAGTAGTTGATAGTCAAGGGCGTGTTATTAATAC 3331682
Query 9147 CTGGGCAGACGTACTTAACCGCGCAGGACTCGGTATGGAAGTCATGCACGAAAGAAACGC 9206
||||| || | ||||||| || | ||||| ||||| ||||| ||| | || ||
Sbjct 3331681 TTGGGCTGATATTATTAACCGTGCTAACTTTGGTATAGAAGTTATGCATGAACGTAATGC 3331622
Query 9207 ACACAACTTCCCGCTTGACCTTGCGGCTGCTGAG 9240
||||||||||| || ||||| || |||| ||||
Sbjct 3331621 TCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 3331588
>seq6
Length=366924
Score = 277 bits (306), Expect = 2e-69
Identities = 371/514 (72%), Gaps = 13/514 (3%)
Strand=Plus/Plus
Query 8728 TCCGGTACGTTCAACTATATGCTTGTCTTCCAGGCTGAGCACAACATCCTGATGCACCCC 8787
|||||||||| | ||| ||| || | |||||||||||||| ||| || ||||||||
Sbjct 334321 TCCGGTACGTGCTTCTA-ATGATTAT--TCCAGGCTGAGCACTTCATTCTTATGCACCCA 334377
Query 8788 TTCCACATGCTTGGTGTTGCTGGTGTCTTCGGCGGATCTCTCTTTTCCGCAATGCATGG- 8846
|| |||||| | ||||| |||||||| |||||||| || || ||| || || |||||
Sbjct 334378 TTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATACATGGG 334437
Query 8847 TTCACTCGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAACCGAGTCTCAAAACTATGG 8906
||| | || |||||| || | | || |||| |||| || ||| || | ||
Sbjct 334438 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCATAGAAAATGAATCTGCTAATCAAGG 334497
Query 8907 CTACAAGTTCGGTCAAGAAGAGGAAACTTACAACATTGTTGCCGCTCATGGCTACTTTGG 8966
|||| |||||||||||||| |||||||||||||||| || |||||||| || |||||
Sbjct 334498 TTACAGATTCGGTCAAGAAGAATAAACTTACAACATTGTAGCTGCTCATGGTTATTTTGG 334557
Query 8967 TCGCTTGATCTTCCAATATGCATCTTTTAACAATTCTAGAAGCTTGCATTTCTTCCTCGC 9026
|| |||||||||| ||| ||||||||| | || ||||||||| | ||
Sbjct 334558 CCGATTGATCTTCCG---------TTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGC 334608
Query 9027 TGCGTGGCCTGTGGTGGGAATCTGGTTTACCGCCCTCGGCGTCTCGACCATGGCTTTCAA 9086
|| ||||| || || || || |||||||| || | || | || |||||||||||
Sbjct 334609 GGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAA 334668
Query 9087 CCTCAATGGCTTCAACTTCAACCAGTCCATTATCGACGGACAAGGACGAGTGCTCAACAC 9146
||| ||||| || || |||||||| || | | || | ||||| || || | || ||
Sbjct 334669 CCTAAATGGTTTAAATTTCAACCAATCAGTAGTTGATAGTCAAGGGCGTGTTATTAATAC 334728
Query 9147 CTGGGCAGACGTACTTAACCGCGCAGGACTCGGTATGGAAGTCATGCACGAAAGAAACGC 9206
||||| || | ||||||| || | ||||| ||||| ||||| ||| | || ||
Sbjct 334729 TTGGGCTGATATTATTAACCGTGCTAACTTTGGTATAGAAGTTATGCATGAACGTAATGC 334788
Query 9207 ACACAACTTCCCGCTTGACCTTGCGGCTGCTGAG 9240
||||||||||| || ||||| || |||| ||||
Sbjct 334789 TCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 334822
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 516479954808000
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