Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11]
7 sequences; 119,667,750 total letters
Query= NC_019929.1
Length=243050
Score E
Sequences producing significant alignments: (Bits) Value
seq7 86.0 1e-11
seq6 86.0 1e-11
seq2 86.0 1e-11
>seq7
Length=154478
Score = 86.0 bits (94), Expect = 1e-11
Identities = 63/72 (88%), Gaps = 1/72 (1%)
Strand=Plus/Minus
Query 169728 GGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAG 169787
||||||||| ||| |||||| |||| ||||||||||| |||||| | |||||||||||
Sbjct 29873 GGATTGTAGTTCAATTGGTC-AGAGCACCGCCCTGTCAAGGCGGAAGCTGCGGGTTCGAG 29815
Query 169788 CCCCGTCAGTCC 169799
||||||||||||
Sbjct 29814 CCCCGTCAGTCC 29803
>seq6
Length=366924
Score = 86.0 bits (94), Expect = 1e-11
Identities = 78/96 (81%), Gaps = 2/96 (2%)
Strand=Plus/Plus
Query 169728 GGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAG 169787
||||||||| ||| | |||| |||| ||||||||||| |||||| | |||||||||||
Sbjct 275104 GGATTGTAGTTCAATCGGTC-AGAGCACCGCCCTGTCAAGGCGGAAGCTGCGGGTTCGAG 275162
Query 169788 CCCCGTCAGTCCTGCCATTTTTA-AATTGCGTCTTA 169822
|||||||||||| | | | | | |||||||| |||
Sbjct 275163 CCCCGTCAGTCCCGACCTAGTCATAATTGCGTTTTA 275198
>seq2
Length=19698289
Score = 86.0 bits (94), Expect = 1e-11
Identities = 78/96 (81%), Gaps = 2/96 (2%)
Strand=Plus/Minus
Query 169728 GGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAG 169787
||||||||| ||| | |||| |||| ||||||||||| |||||| | |||||||||||
Sbjct 3255904 GGATTGTAGTTCAATCGGTC-AGAGCACCGCCCTGTCAAGGCGGAAGCTGCGGGTTCGAG 3255846
Query 169788 CCCCGTCAGTCCTGCCATTTTTA-AATTGCGTCTTA 169822
|||||||||||| | | | | | |||||||| |||
Sbjct 3255845 CCCCGTCAGTCCCGACCTAGTCATAATTGCGTTTTA 3255810
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 777631931957200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |