Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_019929.1 Length=243050 Score E Sequences producing significant alignments: (Bits) Value seq7 86.0 1e-11 seq6 86.0 1e-11 seq2 86.0 1e-11 >seq7 Length=154478 Score = 86.0 bits (94), Expect = 1e-11 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 169728 GGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAG 169787 ||||||||| ||| |||||| |||| ||||||||||| |||||| | ||||||||||| Sbjct 29873 GGATTGTAGTTCAATTGGTC-AGAGCACCGCCCTGTCAAGGCGGAAGCTGCGGGTTCGAG 29815 Query 169788 CCCCGTCAGTCC 169799 |||||||||||| Sbjct 29814 CCCCGTCAGTCC 29803 >seq6 Length=366924 Score = 86.0 bits (94), Expect = 1e-11 Identities = 78/96 (81%), Gaps = 2/96 (2%) Strand=Plus/Plus Query 169728 GGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAG 169787 ||||||||| ||| | |||| |||| ||||||||||| |||||| | ||||||||||| Sbjct 275104 GGATTGTAGTTCAATCGGTC-AGAGCACCGCCCTGTCAAGGCGGAAGCTGCGGGTTCGAG 275162 Query 169788 CCCCGTCAGTCCTGCCATTTTTA-AATTGCGTCTTA 169822 |||||||||||| | | | | | |||||||| ||| Sbjct 275163 CCCCGTCAGTCCCGACCTAGTCATAATTGCGTTTTA 275198 >seq2 Length=19698289 Score = 86.0 bits (94), Expect = 1e-11 Identities = 78/96 (81%), Gaps = 2/96 (2%) Strand=Plus/Minus Query 169728 GGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAG 169787 ||||||||| ||| | |||| |||| ||||||||||| |||||| | ||||||||||| Sbjct 3255904 GGATTGTAGTTCAATCGGTC-AGAGCACCGCCCTGTCAAGGCGGAAGCTGCGGGTTCGAG 3255846 Query 169788 CCCCGTCAGTCCTGCCATTTTTA-AATTGCGTCTTA 169822 |||||||||||| | | | | | |||||||| ||| Sbjct 3255845 CCCCGTCAGTCCCGACCTAGTCATAATTGCGTTTTA 3255810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 777631931957200