Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11]
7 sequences; 119,667,750 total letters
Query= NC_019945.1
Length=132978
Score E
Sequences producing significant alignments: (Bits) Value
seq5 109 5e-19
seq1 89.7 4e-13
>seq5
Length=26975502
Score = 109 bits (120), Expect = 5e-19
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613
||||| |||||||| || || | || ||||||||||||||| ||| || ||||
Sbjct 14953516 ATGCAGATATTTGTCAAGACGCTTACCGGTAAAACCATTACCCTTGAAGTTGAGAGTTCA 14953457
Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673
|| || | | | || | || || ||| ||||| || ||||| || ||||||
Sbjct 14953456 GACACTATTGACAATGTTAAAGCTAAGATCCAAGACAAGGAAGGAGTCCCTCCGGATCAA 14953397
Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733
|||||||| |||||||| || ||||| | || ||| | ||| | || ||||| |||
Sbjct 14953396 CAGAGACTAATCTTTGCTGGTAAACAGCTTGACGATGGTCGCACTCTTGCAGATTACAAC 14953337
Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783
|| || |||||||| ||||| ||| |||| | || || |||| || ||
Sbjct 14953336 ATCCAGAAAGAATCAACTCTCCACTTGGTTCTCAGGTTGAGAGGTGGTAT 14953287
>seq1
Length=30427671
Score = 89.7 bits (98), Expect = 4e-13
Identities = 93/122 (76%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 28647 GACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAA 28706
|||||||||||| | || ||||||||||| | || ||||| || || || | |||
Sbjct 11218920 GACAAAGAGGGAATACCACCTGATCAACAGAGGTTGATATTTGCTGGTAAGCAGCTTGAA 11218861
Query 28707 GATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCACATGGTATTA 28766
||| || ||| | || ||||| |||||||| |||||||| ||||| ||| |||||||
Sbjct 11218860 GATGGTAGAACATTAGCGGATTACAACATTCAGAAAGAATCGACTCTTCACTTGGTATTG 11218801
Query 28767 AG 28768
||
Sbjct 11218800 AG 11218799
Score = 87.8 bits (96), Expect = 2e-12
Identities = 144/205 (70%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613
||||| || || ||||| || || ||||| || ||||| || ||| |||| ||
Sbjct 20549989 ATGCAGATTTTCGTAAAGACTTTGACGGGAAAGACCATCACGCTTGAAGTGGAAAGCTCT 20550048
Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGA-GGGAGTGCCCGTAGATCA 28672
|| ||| | | | || | ||| ||| || |||||||| |||| | | | ||| ||
Sbjct 20550049 GATACGATTGACAATGTGAAGGCAAAGATTCAGGACAAAGAAGGGATTTCACC-AGACCA 20550107
Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732
||||||||| |||||||| ||||| || |||||| | ||| | || ||||| ||
Sbjct 20550108 ACAGAGACTCATCTTTGCAGGCAAGCAGCATGAAGATGGTCGCACTTTAGCGGATTACAA 20550167
Query 28733 CATTCAAAAAGAATCTACTCTGCAC 28757
||| || ||||| || ||||| |||
Sbjct 20550168 CATCCAGAAAGAGTCAACTCTTCAC 20550192
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 425404763707653
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |