Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq5 109 5e-19 seq1 89.7 4e-13 >seq5 Length=26975502 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| |||||||| || || | || ||||||||||||||| ||| || |||| Sbjct 14953516 ATGCAGATATTTGTCAAGACGCTTACCGGTAAAACCATTACCCTTGAAGTTGAGAGTTCA 14953457 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || | || || ||| ||||| || ||||| || |||||| Sbjct 14953456 GACACTATTGACAATGTTAAAGCTAAGATCCAAGACAAGGAAGGAGTCCCTCCGGATCAA 14953397 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 |||||||| |||||||| || ||||| | || ||| | ||| | || ||||| ||| Sbjct 14953396 CAGAGACTAATCTTTGCTGGTAAACAGCTTGACGATGGTCGCACTCTTGCAGATTACAAC 14953337 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || || |||||||| ||||| ||| |||| | || || |||| || || Sbjct 14953336 ATCCAGAAAGAATCAACTCTCCACTTGGTTCTCAGGTTGAGAGGTGGTAT 14953287 >seq1 Length=30427671 Score = 89.7 bits (98), Expect = 4e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 28647 GACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAA 28706 |||||||||||| | || ||||||||||| | || ||||| || || || | ||| Sbjct 11218920 GACAAAGAGGGAATACCACCTGATCAACAGAGGTTGATATTTGCTGGTAAGCAGCTTGAA 11218861 Query 28707 GATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCACATGGTATTA 28766 ||| || ||| | || ||||| |||||||| |||||||| ||||| ||| ||||||| Sbjct 11218860 GATGGTAGAACATTAGCGGATTACAACATTCAGAAAGAATCGACTCTTCACTTGGTATTG 11218801 Query 28767 AG 28768 || Sbjct 11218800 AG 11218799 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || || ||||| || || ||||| || ||||| || ||| |||| || Sbjct 20549989 ATGCAGATTTTCGTAAAGACTTTGACGGGAAAGACCATCACGCTTGAAGTGGAAAGCTCT 20550048 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGA-GGGAGTGCCCGTAGATCA 28672 || ||| | | | || | ||| ||| || |||||||| |||| | | | ||| || Sbjct 20550049 GATACGATTGACAATGTGAAGGCAAAGATTCAGGACAAAGAAGGGATTTCACC-AGACCA 20550107 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||||||| |||||||| ||||| || |||||| | ||| | || ||||| || Sbjct 20550108 ACAGAGACTCATCTTTGCAGGCAAGCAGCATGAAGATGGTCGCACTTTAGCGGATTACAA 20550167 Query 28733 CATTCAAAAAGAATCTACTCTGCAC 28757 ||| || ||||| || ||||| ||| Sbjct 20550168 CATCCAGAAAGAGTCAACTCTTCAC 20550192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425404763707653