Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11]
7 sequences; 119,667,750 total letters
Query= NC_020486.1
Length=171211
Score E
Sequences producing significant alignments: (Bits) Value
seq7 686 0.0
seq2 307 1e-78
seq6 298 6e-76
seq1 105 7e-18
>seq7
Length=154478
Score = 686 bits (760), Expect = 0.0
Identities = 748/993 (75%), Gaps = 0/993 (0%)
Strand=Plus/Minus
Query 160876 TTTTGTAACTGGGTCACCAGCACCGACAACCGCCTTTATGTTGGTTGGTTCGGCGTCCTG 160935
|| ||||||||| | || ||||| || ||||| ||||| |||| ||||| || || ||
Sbjct 1396 TTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1337
Query 160936 ATGATTCCCTGCTTGCTCGCTGCTACCATTTGTTTCATCATTGCCTTCGTTGGTGCTCCC 160995
||||| || ||| | | || || | ||| || || || ||| ||| ||||||
Sbjct 1336 ATGATCCCTACCTTATTGACCGCAACTTCTGTTTTTATTATCGCATTCATTGCTGCTCCT 1277
Query 160996 CCTGTGGACATCGACGGCATTCGTGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAAC 161055
|| || || || || || ||||||||||| || |||| || || | || ||||||||
Sbjct 1276 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 1217
Query 161056 ATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCATC 161115
|| || || ||||| |||| ||| ||||| ||||| || |||| || ||||| |||
Sbjct 1216 ATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATTGGATTGCATTTTTACCCAATC 1157
Query 161116 TGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGTG 161175
|||||||| ||| | || |||||||| |||||||| ||||||| |||| ||||
Sbjct 1156 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGTT 1097
Query 161176 TTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACCGT 161235
| ||||| | |||| | | ||| ||||||||||||||||||||| || ||||
Sbjct 1096 CTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 1037
Query 161236 CTGGGAATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTGCA 161295
||||| ||||||||||||||| || ||||| || |||||||| || || |||| |||
Sbjct 1036 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGCT 977
Query 161296 GTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCATC 161355
|| ||| || ||||||| | ||||| || ||| ||||||| |||||||| || |||
Sbjct 976 GTTTTCTTGATCTATCCAATTGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATC 917
Query 161356 TCTGGTACGTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTCATGCACCCC 161415
|||||||| ||||||| ||| |||| ||||| || |||||||||||||| ||||||||
Sbjct 916 TCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCA 857
Query 161416 TTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACGGT 161475
|| || ||| | || ||||| ||||| || ||||| || || || ||||| ||||| |||
Sbjct 856 TTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTTTTTAGTGCTATGCATGGT 797
Query 161476 TCGCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAAACGAGTCCCAGAACTATGGT 161535
|| |||| || ||| || | | |||||||| ||||| || || || | |||
Sbjct 796 TCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGT 737
Query 161536 TACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCCCACGGGTACTTCGGT 161595
|||| ||||| ||||||||||| || |||||||| || ||||| ||||| || || ||
Sbjct 736 TACAGATTCGGGCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGC 677
Query 161596 CGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGCTCGCTGCACTTCTTCCTTGCT 161655
|| ||||||||||||| ||| |||||||| || || || | || |||||| | ||
Sbjct 676 CGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCG 617
Query 161656 GCTTGGCCTGTTGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAAC 161715
|||||||| || || || || ||||| ||||| | || | || || ||||| ||||||
Sbjct 616 GCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAAC 557
Query 161716 CTGAATGGTTTCAACTTCAACCAGTCTATCGTTGATAGTCAGGGTAAAGTTATCAACACC 161775
|| ||||||||||| |||||||| || | ||||||||||| || ||||| || ||
Sbjct 556 CTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACT 497
Query 161776 TGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGCAATGCT 161835
||||| || || | ||||||||| ||||| |||||||| ||||| || || ||||||
Sbjct 496 TGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 437
Query 161836 CACAACTTCCCTCTTGACCTTGCTGCTGCTGAG 161868
|||||||||||||| ||||| ||||||| ||||
Sbjct 436 CACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 404
Score = 533 bits (590), Expect = 2e-146
Identities = 728/1014 (72%), Gaps = 2/1014 (0%)
Strand=Plus/Plus
Query 162117 TTTGATGTCCTTGACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGA 162176
|||||| | | || |||||| | || ||||| ||||||||||| || ||||||||
Sbjct 32756 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 32815
Query 162177 CTTCTTCTTTTTCCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACTTTC 162236
|| | || ||||| ||| ||| | ||| | ||||||||| | || || || || ||
Sbjct 32816 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 32875
Query 162237 GTCACGAGTTGGTATACTCACGGACTTGCGAGTTCCTATCTTGAGGGTGCAAACTTTCTT 162296
|| || ||||||||||| ||| | || ||||||||| | || ||| || ||| |
Sbjct 32876 GTAACTTCATGGTATACTCATGGATTGGCCAGTTCCTATTTAGAAGGTTGCAATTTTTTA 32935
Query 162297 ACTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTATGGGGT 162356
|| || |||||||||||||| || | | | | |||||| | || | || ||||||
Sbjct 32936 ACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGT 32995
Query 162357 CCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACTTTTGTG 162416
||||| | ||||| || || | || ||||| ||| | || || || ||| |||||||
Sbjct 32996 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTATGGGCTTTTGTT 33055
Query 162417 GCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAACTGGCACGA 162476
|| |||||||| || || ||| | |||||||| ||| | || || |||||||| || |||
Sbjct 33056 GCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGA 33115
Query 162477 -CTTATCGGTATTCGTCCTTACAATGCTATTGCTTTCTCAGGTCCTATTGCTGTATTCGT 162535
|| || | | || ||||| ||||| || || ||||| ||||| |||||||| || ||
Sbjct 33116 TCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGGTCCCATTGCTGTTTTTGT 33174
Query 162536 TAGTGTTTTTCTTATCTATCCTTTGGGACAATCGTCCTGGTTCTTCGCACCGTCGTTCGG 162595
| ||| || || || ||||| | || ||||| |||||||| || || || ||
Sbjct 33175 TTCTGTCTTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGG 33234
Query 162596 GGTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCTAAA 162655
|| || || || || |||||| | ||||| |||||||||| ||||| ||||| | ||
Sbjct 33235 TGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAA 33294
Query 162656 TCCTTTTCACATGATGGGCGTAGCAGGTATCCTTGGTGGTGCATTGCTCTCTGCTATTCA 162715
|| ||||| |||||||| || || ||| | || || | || |||| | ||||||||
Sbjct 33295 CCCATTTCATATGATGGGAGTCGCCGGTGTACTGGGCGCGGCTCTGCTATGCGCTATTCA 33354
Query 162716 TGGAGTGACAGTTGAAAATACACTGTACGAAGATGGCGAACAAGCAAACACTTTTAAAGC 162775
||| | || || |||||||| | | |||||||| || ||||| || || ||
Sbjct 33355 TGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGC 33414
Query 162776 ATTTGACTCCACACAGGAGGAAGAAACGTATTCGATGGTTACTGCGAACCGCTTCTGGTC 162835
||| || | || || | |||||||| ||||| ||||| || || |||||||| |||||
Sbjct 33415 TTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTC 33474
Query 162836 ACAGATTTTCGGTATTGCTTTTAGTAACAAGCGTTGGTTGCATTTCTTTATGCTCTTTGT 162895
||| || || || |||||||| || || |||||||| |||||||||||| | |||||
Sbjct 33475 ACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGT 33534
Query 162896 TCCCGTCATGGGTCTCTGGACAAGTTCTATCGGTATTATTGGACTCGCTCTCAATCTTCG 162955
|| || | ||| | |||| ||| || | || | | || | ||| | || || ||
Sbjct 33535 ACCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTTTAGCTTTGAACCTACG 33594
Query 162956 TGCTTACGACTTTGTATCTCAAGAAGTTCGTGCGGCAGAAGACCCTGAGTTTGAGACGTT 163015
||| || ||||| || || || ||| | ||||| || ||||| || || |||||||| ||
Sbjct 33595 TGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCAGAATTTGAGACTTT 33654
Query 163016 CTATACAAAGAACATTCTTCTGAATGAAGGACTTCGAGCATGGTTAGCACCAGTGGACCA 163075
|||||| || || |||||| | || ||||| |||| || ||| | || | || ||
Sbjct 33655 CTATACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCA 33714
Query 163076 ACCTCATGAGAACTTTGTGTTCCCTGAAGAGGTCTTGCCAAGAGGCAACGCTCT 163129
|||||||| ||| || | |||||||| ||||| | ||| | || ||||||||
Sbjct 33715 GCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 33768
Score = 82.4 bits (90), Expect = 8e-11
Identities = 65/78 (83%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 157691 GGGGTGTAGCGCAGCTTGGTAGCGCGGTTGCTTTGGGAGCAATAGGTCGCAGGTTCGAAT 157750
||| |||||||||||||||||||||| ||| |||||| ||| | ||| | ||||| |||
Sbjct 66562 GGGATGTAGCGCAGCTTGGTAGCGCGTTTGTTTTGGGTACAAAATGTCACGGGTTCAAAT 66503
Query 157751 CCTGTCACCCCGACTTAT 157768
||||||| ||| || |||
Sbjct 66502 CCTGTCATCCCTACCTAT 66485
>seq2
Length=19698289
Score = 307 bits (340), Expect = 1e-78
Identities = 378/514 (74%), Gaps = 13/514 (3%)
Strand=Plus/Minus
Query 161356 TCTGGTACGTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTCATGCACCCC 161415
|| ||||||| | ||| ||| || | |||| || |||||||||||||| ||||||||
Sbjct 3332089 TCCGGTACGTGCTTCTA-ATGATTAT--TCCAGGCTGAGCACAACATTCTTATGCACCCA 3332033
Query 161416 TTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACGG- 161474
|| || ||| | || ||||| ||||| || ||||| || || || ||||| || || ||
Sbjct 3332032 TTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATACATGGG 3331973
Query 161475 TTCGCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAAACGAGTCCCAGAACTATGG 161534
||| |||| || ||| || | | ||||||| ||||| || || || | ||
Sbjct 3331972 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCATAGAAAATGAATCTGCTAATGAAGG 3331913
Query 161535 TTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCCCACGGGTACTTCGG 161594
||||| ||||||||||||||| | || |||||||| || ||||| || || || || ||
Sbjct 3331912 TTACAGATTCGGTCAAGAAGAATAAACTTACAACATTGTAGCTGCTCATGGTTATTTTGG 3331853
Query 161595 TCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGCTCGCTGCACTTCTTCCTTGC 161654
|| |||| |||| | ||||||| || || || | || |||||| | ||
Sbjct 3331852 CCGATTGATCTTCCGTT---------TCAACAATTCTCGTTCTTTACATTTCTTCTTAGC 3331802
Query 161655 TGCTTGGCCTGTTGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAA 161714
|||||||| || || || || ||||| ||||| | || | ||||| ||||| |||||
Sbjct 3331801 GGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAA 3331742
Query 161715 CCTGAATGGTTTCAACTTCAACCAGTCTATCGTTGATAGTCAGGGTAAAGTTATCAACAC 161774
||| |||||||| || |||||||| || | ||||||||||| || ||||| || ||
Sbjct 3331741 CCTAAATGGTTTAAATTTCAACCAATCAGTAGTTGATAGTCAAGGGCGTGTTATTAATAC 3331682
Query 161775 CTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGCAATGC 161834
||||| || || | ||||||||| |||| || ||||| ||||| || || |||||
Sbjct 3331681 TTGGGCTGATATTATTAACCGTGCTAACTTTGGTATAGAAGTTATGCATGAACGTAATGC 3331622
Query 161835 TCACAACTTCCCTCTTGACCTTGCTGCTGCTGAG 161868
||||||||||||||| ||||| ||||||| ||||
Sbjct 3331621 TCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 3331588
>seq6
Length=366924
Score = 298 bits (330), Expect = 6e-76
Identities = 376/514 (73%), Gaps = 13/514 (3%)
Strand=Plus/Plus
Query 161356 TCTGGTACGTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTCATGCACCCC 161415
|| ||||||| | ||| ||| || | |||| || |||||| |||||| ||||||||
Sbjct 334321 TCCGGTACGTGCTTCTA-ATGATTAT--TCCAGGCTGAGCACTTCATTCTTATGCACCCA 334377
Query 161416 TTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACGG- 161474
|| || ||| | || ||||| ||||| || ||||| || || || ||||| || || ||
Sbjct 334378 TTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATACATGGG 334437
Query 161475 TTCGCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAAACGAGTCCCAGAACTATGG 161534
||| |||| || ||| || | | ||||||| ||||| || || || | ||
Sbjct 334438 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCATAGAAAATGAATCTGCTAATCAAGG 334497
Query 161535 TTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCCCACGGGTACTTCGG 161594
||||| ||||||||||||||| | || |||||||| || ||||| || || || || ||
Sbjct 334498 TTACAGATTCGGTCAAGAAGAATAAACTTACAACATTGTAGCTGCTCATGGTTATTTTGG 334557
Query 161595 TCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGCTCGCTGCACTTCTTCCTTGC 161654
|| |||| |||| | ||||||| || || || | || |||||| | ||
Sbjct 334558 CCGATTGATCTTCCGTT---------TCAACAATTCTCGTTCTTTACATTTCTTCTTAGC 334608
Query 161655 TGCTTGGCCTGTTGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAA 161714
|||||||| || || || || ||||| ||||| | || | ||||| ||||| |||||
Sbjct 334609 GGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAA 334668
Query 161715 CCTGAATGGTTTCAACTTCAACCAGTCTATCGTTGATAGTCAGGGTAAAGTTATCAACAC 161774
||| |||||||| || |||||||| || | ||||||||||| || ||||| || ||
Sbjct 334669 CCTAAATGGTTTAAATTTCAACCAATCAGTAGTTGATAGTCAAGGGCGTGTTATTAATAC 334728
Query 161775 CTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGCAATGC 161834
||||| || || | ||||||||| |||| || ||||| ||||| || || |||||
Sbjct 334729 TTGGGCTGATATTATTAACCGTGCTAACTTTGGTATAGAAGTTATGCATGAACGTAATGC 334788
Query 161835 TCACAACTTCCCTCTTGACCTTGCTGCTGCTGAG 161868
||||||||||||||| ||||| ||||||| ||||
Sbjct 334789 TCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 334822
>seq1
Length=30427671
Score = 105 bits (116), Expect = 7e-18
Identities = 162/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 158325 GTGTGAAGACGACCAGTACATCCTTGACGCAGCTGAGGAAGCGGGTGTCGAACTCAATTA 158384
|||||| |||||| ||| | ||||| || ||||||||||| || |||| | |||
Sbjct 22444771 GTGTGACGACGACGTCTACGTTCTTGATGCTGCTGAGGAAGCTGGAATCGATTTGCCTTA 22444830
Query 158385 CTCGTGCCGTGCAGGCGCTTGTTCGTCGTGTGCGGGAAAACTCGTCTCTGGCACCGTAGA 158444
||| |||||||| || |||||||| ||||| || ||| | || ||||| | || ||
Sbjct 22444831 CTCTTGCCGTGCTGGTTCTTGTTCGAGCTGTGCTGGTAAAGTTGTGTCTGGATCTGTTGA 22444890
Query 158445 CCAAAGCGACCAGTCCTTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTG 158504
|| |||||| ||||| || ||||| || || | | || || |||| |||||
Sbjct 22444891 TCAGTCTGACCAGAGTTTCCTTGATGATGAACAGATTGGTGAAGGGTTTGTTCTCACTTG 22444950
Query 158505 TGTTTCTTATCCTACAAGTGATTGTGTGATTGAGACTGACAAGGAAGAGGA 158555
|| | |||| ||||| |||| | ||||| || |||| ||||| ||
Sbjct 22444951 TGCTGCTTACCCTACCTCTGATGTTACCATTGAAACCCACAAAGAAGAAGA 22445001
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547747152072120
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