Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11]
7 sequences; 119,667,750 total letters
Query= NC_020835.1
Length=47325
Score E
Sequences producing significant alignments: (Bits) Value
seq7 518 1e-142
seq2 194 5e-45
seq6 185 3e-42
>seq7
Length=154478
Score = 518 bits (574), Expect = 1e-142
Identities = 710/987 (72%), Gaps = 6/987 (1%)
Strand=Plus/Plus
Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893
||||| ||||| |||||||| ||||||||||| || ||||||||||| | ||||||||
Sbjct 413 AGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTT 472
Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGCTACAATGGA 17953
||| | ||| | | |||||||| ||| | || ||||| | | || | ||
Sbjct 473 AGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACTATCAACTACTGA 532
Query 17954 TTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAG 18013
||||||||| ||||| ||||| || || ||||||||||| || || | || ||||
Sbjct 533 TTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTAAA 592
Query 18014 CCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAAA 18073
||| || | || |||||||| || ||||||||||||| | | |||||| ||
Sbjct 593 CCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAA 652
Query 18074 GCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGT 18133
|||||||| ||||| || | || ||||| || || ||||| || ||||| || || ||
Sbjct 653 ACTAGCATATTGGAAAATCAATCGGCCAAAATAACCGTGAGCAGCTACAATGTTGTAAGT 712
Query 18134 CTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTCT 18193
||||||||||| || ||| | || || | || ||| ||| || || ||||| ||
Sbjct 713 TTCTTCTTCTTGCCCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCT 772
Query 18194 AATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATAC 18253
|| | ||||| || | || ||||||||| || | | || ||||||||
Sbjct 773 GATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAAAAGGGAGCCGCCGAATAC 832
Query 18254 CCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATAC 18313
|| || ||||| | ||| || || || |||||||| || ||||| || || ||||||||
Sbjct 833 ACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATAC 892
Query 18314 GAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTG 18373
| ||| || ||||||||||| || || ||||||||||||||||| ||||| || ||
Sbjct 893 AATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCCTG 952
Query 18374 TCCAAAAGGATA-AACGAGAAATACTGAGAAG--GCAGCTGCTACTGGTGCGGAATAAGC 18430
|||| ||||| | | ||||| || || || |||||||| || || || ||||| ||
Sbjct 953 ACCAATTGGATAGATCAAGAAA-AC--AGCAGTCGCAGCTGCAACAGGAGCTGAATATGC 1009
Query 18431 AACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTA 18490
|||| |||||| || |||||||| || | ||||||||||||| | || ||||| ||
Sbjct 1010 AACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATA 1069
Query 18491 AGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAA 18550
| || | || | | |||||| | ||||| |||| ||| || || ||||| ||||
Sbjct 1070 ACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTTGTATAG 1129
Query 18551 CCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGA 18610
||| || || | || ||||||||||||||||||||| || || | || || || |||
Sbjct 1130 CCATTCATCAACGGATGCAGCTTCCCAGATTGGGTAAAAATGCAATCCAATAGCTGCAGA 1189
Query 18611 TGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGG 18670
| || | || || || || || || |||||||| || || | | ||| || |||||
Sbjct 1190 AGTAGGAATAATGGCACCGGAAATAATATTGTTTCCGTAAAGAAGAGATCCAGAAACAGG 1249
Query 18671 CTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGT 18730
|||||||||||||| || || || ||||||||||||| ||||| || | ||| | |
Sbjct 1250 TTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAATAAAAACAGA 1309
Query 18731 AGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGGTT 18790
|| |||||| || | | ||||||||| | || |||||||| || | ||| || |||||
Sbjct 1310 AGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTT 1369
Query 18791 GTTTGTACTCGTAACCCAGTCACATAA 18817
| || || || | ||||| ||| ||
Sbjct 1370 TTCAGTGCTAGTTATCCAGTTACAGAA 1396
>seq2
Length=19698289
Score = 194 bits (214), Expect = 5e-45
Identities = 331/480 (69%), Gaps = 10/480 (2%)
Strand=Plus/Plus
Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893
||||| ||||| |||||||| ||||||||||| || ||||||||||| | |||| |||
Sbjct 3331597 AGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCTATACCAAAGTT 3331656
Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGCTACAATGGA 17953
||| | ||| | | |||||||| ||| | || | ||| | | || | ||
Sbjct 3331657 AGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGCCCTTGACTATCAACTACTGA 3331716
Query 17954 TTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAG 18013
||||||||| || || ||||| || || |||||||||||| || || | || ||||
Sbjct 3331717 TTGGTTGAAATTTAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTAAA 3331776
Query 18014 CCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAAA 18073
||| || | || |||||||| || ||||||||||||| | | |||||| ||
Sbjct 3331777 CCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAA 3331836
Query 18074 GCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGT 18133
| ||||||| | || ||||| || |||||||| || ||||| || || ||
Sbjct 3331837 AC---------GGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATGTTGTAAGT 3331887
Query 18134 CTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTCT 18193
| ||||||||| || ||| | || || | || ||| ||| || | ||||| ||
Sbjct 3331888 TTATTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTATGGTTTCCCT 3331947
Query 18194 AAT-AAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATA 18252
|| || || | || |||| || || |||||| |||| | || |||||||
Sbjct 3331948 GATCAAACTAGAAGTTACCAAGGAACCCATGTATAGCACTAAATAGGGAGCCGCCGAATA 3332007
Query 18253 CCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATA 18312
| || || ||||| | ||| || || || |||||||| || ||||| || || |||||||
Sbjct 3332008 CACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATA 3332067
>seq6
Length=366924
Score = 185 bits (204), Expect = 3e-42
Identities = 329/480 (69%), Gaps = 10/480 (2%)
Strand=Plus/Minus
Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893
||||| ||||| |||||||| ||||||||||| || ||||||||||| | |||| |||
Sbjct 334813 AGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCTATACCAAAGTT 334754
Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGCTACAATGGA 17953
||| | ||| | | |||||||| ||| | || | ||| | | || | ||
Sbjct 334753 AGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGCCCTTGACTATCAACTACTGA 334694
Query 17954 TTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAG 18013
||||||||| || || ||||| || || |||||||||||| || || | || ||||
Sbjct 334693 TTGGTTGAAATTTAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTAAA 334634
Query 18014 CCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAAA 18073
||| || | || |||||||| || ||||||||||||| | | |||||| ||
Sbjct 334633 CCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAA 334574
Query 18074 GCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGT 18133
| ||||||| | || ||||| || |||||||| || ||||| || || ||
Sbjct 334573 AC---------GGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATGTTGTAAGT 334523
Query 18134 CTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTCT 18193
| ||||||||| || ||| | || || | || ||| ||| || | ||||| ||
Sbjct 334522 TTATTCTTCTTGACCGAATCTGTAACCTTGATTAGCAGATTCATTTTCTATGGTTTCCCT 334463
Query 18194 AAT-AAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATA 18252
|| || || | || |||| || || |||||| |||| | || |||||||
Sbjct 334462 GATCAAACTAGAAGTTACCAAGGAACCCATGTATAGCACTAAATAGGGAGCCGCCGAATA 334403
Query 18253 CCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATA 18312
| || || ||||| | ||| || || || |||||||| || ||| || || |||||||
Sbjct 334402 CACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGAAGTGCTCAGCCTGGAATA 334343
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 151318387421658
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |