Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq7 518 1e-142 seq2 194 5e-45 seq6 185 3e-42 >seq7 Length=154478 Score = 518 bits (574), Expect = 1e-142 Identities = 710/987 (72%), Gaps = 6/987 (1%) Strand=Plus/Plus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| ||||| |||||||| ||||||||||| || ||||||||||| | |||||||| Sbjct 413 AGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTT 472 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGCTACAATGGA 17953 ||| | ||| | | |||||||| ||| | || ||||| | | || | || Sbjct 473 AGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACTATCAACTACTGA 532 Query 17954 TTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAG 18013 ||||||||| ||||| ||||| || || ||||||||||| || || | || |||| Sbjct 533 TTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTAAA 592 Query 18014 CCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAAA 18073 ||| || | || |||||||| || ||||||||||||| | | |||||| || Sbjct 593 CCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAA 652 Query 18074 GCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGT 18133 |||||||| ||||| || | || ||||| || || ||||| || ||||| || || || Sbjct 653 ACTAGCATATTGGAAAATCAATCGGCCAAAATAACCGTGAGCAGCTACAATGTTGTAAGT 712 Query 18134 CTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTCT 18193 ||||||||||| || ||| | || || | || ||| ||| || || ||||| || Sbjct 713 TTCTTCTTCTTGCCCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCT 772 Query 18194 AATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATAC 18253 || | ||||| || | || ||||||||| || | | || |||||||| Sbjct 773 GATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAAAAGGGAGCCGCCGAATAC 832 Query 18254 CCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATAC 18313 || || ||||| | ||| || || || |||||||| || ||||| || || |||||||| Sbjct 833 ACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATAC 892 Query 18314 GAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTG 18373 | ||| || ||||||||||| || || ||||||||||||||||| ||||| || || Sbjct 893 AATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCCTG 952 Query 18374 TCCAAAAGGATA-AACGAGAAATACTGAGAAG--GCAGCTGCTACTGGTGCGGAATAAGC 18430 |||| ||||| | | ||||| || || || |||||||| || || || ||||| || Sbjct 953 ACCAATTGGATAGATCAAGAAA-AC--AGCAGTCGCAGCTGCAACAGGAGCTGAATATGC 1009 Query 18431 AACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTA 18490 |||| |||||| || |||||||| || | ||||||||||||| | || ||||| || Sbjct 1010 AACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATA 1069 Query 18491 AGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAA 18550 | || | || | | |||||| | ||||| |||| ||| || || ||||| |||| Sbjct 1070 ACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTTGTATAG 1129 Query 18551 CCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGA 18610 ||| || || | || ||||||||||||||||||||| || || | || || || ||| Sbjct 1130 CCATTCATCAACGGATGCAGCTTCCCAGATTGGGTAAAAATGCAATCCAATAGCTGCAGA 1189 Query 18611 TGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGG 18670 | || | || || || || || || |||||||| || || | | ||| || ||||| Sbjct 1190 AGTAGGAATAATGGCACCGGAAATAATATTGTTTCCGTAAAGAAGAGATCCAGAAACAGG 1249 Query 18671 CTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGT 18730 |||||||||||||| || || || ||||||||||||| ||||| || | ||| | | Sbjct 1250 TTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAATAAAAACAGA 1309 Query 18731 AGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGGTT 18790 || |||||| || | | ||||||||| | || |||||||| || | ||| || ||||| Sbjct 1310 AGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTT 1369 Query 18791 GTTTGTACTCGTAACCCAGTCACATAA 18817 | || || || | ||||| ||| || Sbjct 1370 TTCAGTGCTAGTTATCCAGTTACAGAA 1396 >seq2 Length=19698289 Score = 194 bits (214), Expect = 5e-45 Identities = 331/480 (69%), Gaps = 10/480 (2%) Strand=Plus/Plus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| ||||| |||||||| ||||||||||| || ||||||||||| | |||| ||| Sbjct 3331597 AGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCTATACCAAAGTT 3331656 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGCTACAATGGA 17953 ||| | ||| | | |||||||| ||| | || | ||| | | || | || Sbjct 3331657 AGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGCCCTTGACTATCAACTACTGA 3331716 Query 17954 TTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAG 18013 ||||||||| || || ||||| || || |||||||||||| || || | || |||| Sbjct 3331717 TTGGTTGAAATTTAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTAAA 3331776 Query 18014 CCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAAA 18073 ||| || | || |||||||| || ||||||||||||| | | |||||| || Sbjct 3331777 CCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAA 3331836 Query 18074 GCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGT 18133 | ||||||| | || ||||| || |||||||| || ||||| || || || Sbjct 3331837 AC---------GGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATGTTGTAAGT 3331887 Query 18134 CTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTCT 18193 | ||||||||| || ||| | || || | || ||| ||| || | ||||| || Sbjct 3331888 TTATTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTATGGTTTCCCT 3331947 Query 18194 AAT-AAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATA 18252 || || || | || |||| || || |||||| |||| | || ||||||| Sbjct 3331948 GATCAAACTAGAAGTTACCAAGGAACCCATGTATAGCACTAAATAGGGAGCCGCCGAATA 3332007 Query 18253 CCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATA 18312 | || || ||||| | ||| || || || |||||||| || ||||| || || ||||||| Sbjct 3332008 CACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATA 3332067 >seq6 Length=366924 Score = 185 bits (204), Expect = 3e-42 Identities = 329/480 (69%), Gaps = 10/480 (2%) Strand=Plus/Minus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| ||||| |||||||| ||||||||||| || ||||||||||| | |||| ||| Sbjct 334813 AGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCTATACCAAAGTT 334754 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGCTACAATGGA 17953 ||| | ||| | | |||||||| ||| | || | ||| | | || | || Sbjct 334753 AGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGCCCTTGACTATCAACTACTGA 334694 Query 17954 TTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAG 18013 ||||||||| || || ||||| || || |||||||||||| || || | || |||| Sbjct 334693 TTGGTTGAAATTTAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTAAA 334634 Query 18014 CCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAAA 18073 ||| || | || |||||||| || ||||||||||||| | | |||||| || Sbjct 334633 CCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAA 334574 Query 18074 GCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGT 18133 | ||||||| | || ||||| || |||||||| || ||||| || || || Sbjct 334573 AC---------GGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATGTTGTAAGT 334523 Query 18134 CTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTCT 18193 | ||||||||| || ||| | || || | || ||| ||| || | ||||| || Sbjct 334522 TTATTCTTCTTGACCGAATCTGTAACCTTGATTAGCAGATTCATTTTCTATGGTTTCCCT 334463 Query 18194 AAT-AAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATA 18252 || || || | || |||| || || |||||| |||| | || ||||||| Sbjct 334462 GATCAAACTAGAAGTTACCAAGGAACCCATGTATAGCACTAAATAGGGAGCCGCCGAATA 334403 Query 18253 CCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATA 18312 | || || ||||| | ||| || || || |||||||| || ||| || || ||||||| Sbjct 334402 CACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGAAGTGCTCAGCCTGGAATA 334343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151318387421658