Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11]
7 sequences; 119,667,750 total letters
Query= NC_020838.1
Length=45728
Score E
Sequences producing significant alignments: (Bits) Value
seq7 560 3e-155
seq2 241 4e-59
seq6 232 2e-56
>seq7
Length=154478
Score = 560 bits (620), Expect = 3e-155
Identities = 710/974 (73%), Gaps = 2/974 (0%)
Strand=Plus/Plus
Query 21460 CCTCCACGGATGCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAA 21519
|||| || | || ||||| || ||||||||||| || || || |||||||| || || |
Sbjct 403 CCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCA 462
Query 21520 AGCCAAGGTTGGCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAG 21579
|||||||| |||||||||| ||| |||||||| || || || || |||| | | |
Sbjct 463 TACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACTAT 522
Query 21580 CTAGCAGAGATTGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAA 21639
| | | |||||||| || ||||||||||| | |||||||||||| ||| | || |
Sbjct 523 CAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTA 582
Query 21640 GCGCAGCAAACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGG 21699
|||| ||||||||||||||| || ||||| || || | |||||||| | | ||| |
Sbjct 583 AAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAG 642
Query 21700 AATTATTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAA 21759
|||| || || |||||||||||||| || | || |||||||| ||||||||||| ||||
Sbjct 643 AATTGTTGAAACTAGCATATTGGAAAATCAATCGGCCAAAATAACCGTGAGCAGCTACAA 702
Query 21760 TATTGTAAGTCTCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAG 21819
| |||||||| ||||| ||||| || || ||||||| | || || | | ||| |
Sbjct 703 TGTTGTAAGTTTCTTCTTCTTGCCCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTG 762
Query 21820 TCGTCTCACGAATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCC 21879
| || || | || | || || |||| | ||| ||||||||| || | |
Sbjct 763 TGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAAAAGGGAGC 822
Query 21880 CACCAAATACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAG 21939
| || ||||| || || ||||| | ||||||||| || ||||||||||| ||||||||||
Sbjct 823 CGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAG 882
Query 21940 CCTGGAACACCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAA 21999
||||||| || | ||| ||||||| || || || || || | |||||| |||||||||
Sbjct 883 CCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAA 942
Query 22000 AAGAGCCCTGTCCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAG 22059
|| ||||| |||| ||||| | | ||| |||||||||||||| || |||||||| |
Sbjct 943 AACTTCCCTGACCAATTGGATAGATCAAGAAAACAGCAGTCGCAGCTGCAACAGGAGCTG 1002
Query 22060 AGTACGCAACAAAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTC 22119
| || |||||| ||||| || | ||| || || || | |||||||||||||| || |
Sbjct 1003 AATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGAC 1062
Query 22120 CCATGTAAGCAAAGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGT 22179
|||| ||| | || |||| | ||||| | || | |||| | ||||||||||
Sbjct 1063 CCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCGCCGT 1122
Query 22180 TGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGG 22239
|||| ||||||||||||| | ||||||||||| |||||||| || || | ||| || |
Sbjct 1123 TGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATTGGGTAAAAATGCAATCCAATAG 1182
Query 22240 CATTACTGCTCGGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAG 22299
| | | |||| | ||| || || || || ||||| || || | || || ||||
Sbjct 1183 CTGCAGAAGTAGGAATAATGGCACCGGAAATAATATTGTTTCCGTAAAGAAGAGATCCAG 1242
Query 22300 CGACGGGTTCTCGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAA 22359
|| ||||| || || ||||| || || || || || || ||| || ||||||||||
Sbjct 1243 AAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAATAA 1302
Query 22360 AACAAGTTGTAGCGG-CAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAA 22418
|| || || |||| ||| ||| | || ||||| | || || |||||||| | |||
Sbjct 1303 AAACAGAAGTTGCGGTCAATAAGGTA-GGGATCATCAAAACACCAAACCATCCAATGTAA 1361
Query 22419 AGACGGTTATTAGT 22432
|||||||| | |||
Sbjct 1362 AGACGGTTTTCAGT 1375
>seq2
Length=19698289
Score = 241 bits (266), Expect = 4e-59
Identities = 346/488 (71%), Gaps = 10/488 (2%)
Strand=Plus/Plus
Query 21460 CCTCCACGGATGCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAA 21519
|||| || | || ||||| || ||||||||||| || || || |||||||| || || |
Sbjct 3331587 CCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCTA 3331646
Query 21520 AGCCAAGGTTGGCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAG 21579
|||| ||| |||||||||| ||| |||||||| || || || || | || | | |
Sbjct 3331647 TACCAAAGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGCCCTTGACTAT 3331706
Query 21580 CTAGCAGAGATTGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAA 21639
| | | |||||||| || || |||||||| | |||||||||||| || | || |
Sbjct 3331707 CAACTACTGATTGGTTGAAATTTAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTA 3331766
Query 21640 GCGCAGCAAACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGG 21699
|||| ||||||||||||||| || ||||| || || | |||||||| | | ||| |
Sbjct 3331767 AAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAG 3331826
Query 21700 AATTATTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAA 21759
|||| || || | ||||||| | || |||||||| || |||||||| ||||
Sbjct 3331827 AATTGTTGAAAC---------GGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAA 3331877
Query 21760 TATTGTAAGTCTCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAG 21819
| |||||||| | ||| |||||||| || ||||||| | || || | | |||
Sbjct 3331878 TGTTGTAAGTTTATTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTA 3331937
Query 21820 TCGTCTCACGAATGAGTGACGACGTGACC-AGGCTACCGTGCATAGCAGAGAACAAACTC 21878
| || || | || | || || ||| ||| || || |||||| || |
Sbjct 3331938 TGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCCATGTATAGCACTAAATAGGGAG 3331997
Query 21879 CCACCAAATACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCA 21938
|| || ||||| || || ||||| | ||||||||| || ||||||||||| |||||||||
Sbjct 3331998 CCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCA 3332057
Query 21939 GCCTGGAA 21946
||||||||
Sbjct 3332058 GCCTGGAA 3332065
>seq6
Length=366924
Score = 232 bits (256), Expect = 2e-56
Identities = 344/488 (70%), Gaps = 10/488 (2%)
Strand=Plus/Minus
Query 21460 CCTCCACGGATGCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAA 21519
|||| || | || ||||| || ||||||||||| || || || |||||||| || || |
Sbjct 334823 CCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCTA 334764
Query 21520 AGCCAAGGTTGGCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAG 21579
|||| ||| |||||||||| ||| |||||||| || || || || | || | | |
Sbjct 334763 TACCAAAGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGCCCTTGACTAT 334704
Query 21580 CTAGCAGAGATTGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAA 21639
| | | |||||||| || || |||||||| | |||||||||||| || | || |
Sbjct 334703 CAACTACTGATTGGTTGAAATTTAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTA 334644
Query 21640 GCGCAGCAAACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGG 21699
|||| ||||||||||||||| || ||||| || || | |||||||| | | ||| |
Sbjct 334643 AAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAG 334584
Query 21700 AATTATTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAA 21759
|||| || || | ||||||| | || |||||||| || |||||||| ||||
Sbjct 334583 AATTGTTGAAAC---------GGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAA 334533
Query 21760 TATTGTAAGTCTCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAG 21819
| |||||||| | ||| |||||||| || ||||||| | || || | | |||
Sbjct 334532 TGTTGTAAGTTTATTCTTCTTGACCGAATCTGTAACCTTGATTAGCAGATTCATTTTCTA 334473
Query 21820 TCGTCTCACGAATGAGTGACGACGTGACC-AGGCTACCGTGCATAGCAGAGAACAAACTC 21878
| || || | || | || || ||| ||| || || |||||| || |
Sbjct 334472 TGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCCATGTATAGCACTAAATAGGGAG 334413
Query 21879 CCACCAAATACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCA 21938
|| || ||||| || || ||||| | ||||||||| || ||||||||||| |||||||
Sbjct 334412 CCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGAAGTGCTCA 334353
Query 21939 GCCTGGAA 21946
||||||||
Sbjct 334352 GCCTGGAA 334345
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 146207987846460
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |