Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1 145 9e-30 seq2 123 3e-23 seq5 107 2e-18 >seq1 Length=30427671 Score = 145 bits (160), Expect = 9e-30 Identities = 303/448 (68%), Gaps = 10/448 (2%) Strand=Plus/Minus Query 175237 GTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGC 175296 ||||| ||||| ||| | || ||||| | || ||||||| |||||| ||| Sbjct 1961820 GTGGAGTTTCTGAAGAAGCCTGAGAGGTTCACTGCGGTTGGTGCCCGGATCCCAAAAGGT 1961761 Query 175297 GCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGT 175356 | ||||| | ||| || ||||| || || ||||| | || |||||| || ||| Sbjct 1961760 GTTCTTCTTGTTGGTCCTCCTGGTACCGGGAAAACCCTGTTGGCAAAAGCCATTGCTGGT 1961701 Query 175357 GAATCAAATGTCCCATTCAT--CCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTG 175414 ||| | ||| || ||| | ||| ||| | | | ||||| ||||||||||| | Sbjct 1961700 GAAGCTGGTGTGCCCTTCTTTTCCAT--CTCGGGTTCTGAGTTTGTTGAGATGTTTGTCG 1961643 Query 175415 GTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTA 175474 |||| ||||| |||||| |||||||| || ||| ||| |||||| ||||| | Sbjct 1961642 GTGTTGGTGCATCAAGGGTCCGCGATCTTTTCAAAAAAGCCAAAGAAAATGCTCCATGCA 1961583 Query 175475 TTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGC 175531 |||| ||| | ||||| || ||||| || || | |||| | | |||| |||| Sbjct 1961582 TTGTTTTCGTGGATGAAATAGATGCTGTTGGTAGGCAAAGAGGAACTGGAATTGGT---G 1961526 Query 175532 CAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTG 175591 || ||||| || |||||||| || ||||||| || || || ||||||||||| |||| Sbjct 1961525 GAGGTAATGATGAAAGAGAACAGACCCTTAATCAGCTCCTGACTGAGATGGATGGTTTTG 1961466 Query 175592 ACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACG 175651 | | | ||||| || | || |||| || || || | | || || ||||| || Sbjct 1961465 AGGGTAACACTGGTGTTATCGTAGTTGCTGCAACCAACAGAGCAGACATTCTTGACTCCG 1961406 Query 175652 CCCTCCTTCGCCCGGGTCGTTTTGATCG 175679 | | || | || || |||||||| || Sbjct 1961405 CTTTGCTAAGACCAGGGCGTTTTGACCG 1961378 Score = 118 bits (130), Expect = 1e-21 Identities = 197/280 (70%), Gaps = 6/280 (2%) Strand=Plus/Minus Query 175314 GCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATT 175373 ||| |||||||| ||||| ||||| || | || | || || ||| | || || || Sbjct 18616022 GCCTGGTACGGGTAAGACACTCCTGGCTAGGGCGGTGGCTGGGGAAGCTGGAGTGCCGTT 18615963 Query 175374 CATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGT 175433 | || ||| | ||| | | || || ||| | ||||| ||||||||||| || || Sbjct 18615962 CTTCTCTTGCGCGGCCTCGGAGTTCGTAGAGCTTTTTGTGGGTGTGGGTGCATCGAGAGT 18615903 Query 175434 TCGCGATCTCTTTGAAATCGCCC-GCGAAAATCAACCATGTATTGTCTTCATTGATGAGA 175492 | | ||| | || || | || | ||| | || |||||||| ||||||||||||| Sbjct 18615902 TAGGGATTTGTTCGAGAAGGCTAAGTCTAAAGCC-CCTTGTATTGTATTCATTGATGAGA 18615844 Query 175493 TTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGA 175550 |||| || ||||| | ||| | | ||||| ||| | | || |||||| |||||||| Sbjct 18615843 TTGACGCTGTGGGTAGGCAGAGAGGAGCTGGGATGGGAGG--AGGAAATGATGAGAGAGA 18615786 Query 175551 ACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTT 175590 ||| || |||||||| || | || ||||||||||| ||| Sbjct 18615785 ACAGACTATTAATCAGCTGTTGACAGAGATGGATGGATTT 18615746 >seq2 Length=19698289 Score = 123 bits (136), Expect = 3e-23 Identities = 276/413 (67%), Gaps = 6/413 (1%) Strand=Plus/Plus Query 175237 GTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGC 175296 ||||| ||| | ||| |||| ||||||| || ||||||||||||||| ||| Sbjct 13175418 GTGGAGTTTTTGAAGAAACCTGAGAGATTCACTGCGGTTGGTGCCAAGATCCCGAAAGGT 13175477 Query 175297 GCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGT 175356 | ||||| ||| || ||||| || || ||||| | || |||||| || ||| Sbjct 13175478 GTTCTTCTTATTGGTCCTCCTGGTACCGGGAAAACCCTTTTGGCAAAAGCCATTGCTGGT 13175537 Query 175357 GAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGT 175416 ||| | ||| || ||| || ||||| | | ||||| ||||||||||| ||| Sbjct 13175538 GAAGCTGGTGTGCCTTTCTTCTCCATCTCTGGTTCTGAGTTTGTTGAGATGTTTGTCGGT 13175597 Query 175417 GTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATT 175476 || |||||| || || || ||||| || | | ||| || || || || ||| Sbjct 13175598 GTTGGTGCCTCGAGAGTCCGTGATCTTTTCAAGAAAGCCAAGGAGAACGCTCCTTGCATT 13175657 Query 175477 GTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGCCA 175533 ||||| | ||||| || ||||| || || | |||| | | | || |||| | Sbjct 13175658 GTCTTTGTAGATGAAATAGATGCTGTTGGTAGGCAAAGAGGAACCGGAATTGGT---GGA 13175714 Query 175534 GCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGAC 175593 | ||||| || |||||||| || | ||||| || || || ||||||||||| ||||| Sbjct 13175715 GGTAATGATGAAAGAGAACAGACCCTCAATCAGCTCCTAACTGAGATGGATGGTTTTGAA 13175774 Query 175594 AATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646 | | ||||| || | || |||| || || ||| | | || || ||||| Sbjct 13175775 GGTAACACTGGTGTTATCGTAGTTGCTGCAACCAATAGAGCAGACATTCTTGA 13175827 Score = 86.0 bits (94), Expect = 7e-12 Identities = 105/140 (75%), Gaps = 4/140 (3%) Strand=Plus/Plus Query 76451 GACTGGGATGTTCTCAAGGA-ACGC-ATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGA 76508 ||||||| |||||| | || | | ||||| |||| || | | ||| |||||| Sbjct 9296530 GACTGGGCTGTTCTTAGAGATATGATATCAA--AGAATGGAGTGAGGAACTCTCTTTTAG 9296587 Query 76509 TGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAAC 76568 | |||||||||||||| || || ||| |||||| | || || |||||||| ||||| | Sbjct 9296588 TAGCACCAATGCCAACTGCTTCAACCAGTCAAATCCTTGGGAACAATGAATGTTTTGAGC 9296647 Query 76569 CATACACAACAAACATCTAC 76588 | |||||| ||||||||||| Sbjct 9296648 CCTACACATCAAACATCTAC 9296667 >seq5 Length=26975502 Score = 107 bits (118), Expect = 2e-18 Identities = 261/389 (67%), Gaps = 20/389 (5%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || |||||||| ||||| || | || |||| | || || ||| | || || ||| Sbjct 16903532 CCGGGTACGGGGAAGACGCTTTTGGCTAGAGCTGTGGCTGGAGAAGCTGGAGTGCCGTTC 16903591 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 | ||| |||| | | ||||| ||| | ||||||||||||||||| || ||| Sbjct 16903592 TTTTCGTGTGCTGCTTCGGAGTTTGTTGAGCTTTTTGTTGGTGTGGGTGCTTCTAGAGTT 16903651 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAA----CCATGTATTGTCTTCATTGATGA 175490 | ||| | ||||| | || |||| || || |||||||| || |||||||| Sbjct 16903652 AGGGATTTATTTGAGAAGGC----GAAATCGAAAGCTCCTTGTATTGTGTTTATTGATGA 16903707 Query 175491 GATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGA 175548 ||||||||| || || | ||| | | ||||| ||| | | |||||| ||||| Sbjct 16903708 GATTGATGCTGTTGGTAGACAAAGAGGAGCTGGGATGGGTGGT--GGAAATGATGAGAGG 16903765 Query 175549 GAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGG---C 175605 ||||| || |||||||| || | || ||||||||||| ||| | | |||| | Sbjct 16903766 GAACAGACTATTAATCAGCTTTTGACTGAGATGGATGGGTTTTCTGGTAACTCTGGTGTC 16903825 Query 175606 ATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCG 175665 |||||| | || ||||||||| | |||| | ||||| ||| | || | || Sbjct 16903826 ATTGTG---TTGGCTGCCACTAATAGACCGGATGTTCTTGACTCCGCGTTGCTGAGACCT 16903882 Query 175666 GGTCGTTTTGATC-GCAAGATCCAAGTGG 175693 ||| | ||||| | ||||| || ||||| Sbjct 16903883 GGTAGATTTGACCGGCAAG-TCACAGTGG 16903910 Score = 89.7 bits (98), Expect = 6e-13 Identities = 261/396 (66%), Gaps = 17/396 (4%) Strand=Plus/Minus Query 177564 AAACTGCCTCACAGAGTGTGTCTCCCCCGTCGCGACAACATATTCATCAGCCTCTTCTTG 177623 ||||| | | || | ||||| ||| | || || || ||||| ||||| | | || || Sbjct 26477267 AAACTCCTTGACGGTGTGTGATTCCTCAGTTGCAACCACATAGTCATCTGGTTTCTCCTG 26477208 Query 177624 TTGAAGCATGAGCCACATGGCTTCAACATAGTCCTTGGCATGACCCCAGTCTCTGGCAGC 177683 || ||||| |||||||| ||||| || ||||| || |||||||||||| | ||| Sbjct 26477207 CTGCAGCATCAGCCACATTGCTTCCACGTAGTCTCCTGCGAAACCCCAGTCTCTTGAAGC 26477148 Query 177684 GTTGAGGTTACCGAGTTCAAGGAACTCTCTCT-CA--CCTTTCACAATTTGTTTGACGCC 177740 | | || || || | || || ||| || || | || | | | | Sbjct 26477147 CTGTATATTTCCCAGG---AAGAGCTTGGTCTGCAATCCGACCTTGATCCTTCCCAAGGC 26477091 Query 177741 ATCAGTAATCTTCTTTGTGACAAAGTCGGCACCTCGTCTCGGTGATTCGTGGTTGAAGAG 177800 ||| || ||| || || |||| | |||| | ||||| |||||||||||||| Sbjct 26477090 CCGAGTGATTTTCCGAGTCACGAAGTTCTCGCCTCTGCGAGGTGACTCGTGGTTGAAGAG 26477031 Query 177801 GATTCCGGAGCAGGCATACATACCATAGGATTCTCGGTAATTTTTGAC---GAGCCAGTG 177857 ||||||| |||||| |||| ||| |||| ||||||||| ||||| | ||| || Sbjct 26477030 GATTCCGTTGCAGGCGTACAGACCGTAGGCCTCTCGGTAA---TTGACTGTGTACCAATG 26476974 Query 177858 AGCGGCCAATTTGGAGACGCCATAGACGGATCGTGGGTAGAAGGGTGTCTCCTCAGTTTG 177917 ||| || ||||||| | | ||| |||| || | |||||| || ||| | || Sbjct 26476973 AGCAGCGCATTTGGACGCAGCGTAGGGAGATCTCGGATGGAAGGGCGTGGTCTCTGACTG 26476914 Query 177918 TGGAGTTTCTCGGACTTTA-CCAAACATCTCCGAAG 177952 |||| ||| || | || ||||||||||||| Sbjct 26476913 CGGAG----GAGGAGTTGACCCGAACATCTCCGAAG 26476882 Score = 86.0 bits (94), Expect = 7e-12 Identities = 137/196 (70%), Gaps = 3/196 (2%) Strand=Plus/Plus Query 65022 GAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGCTCCTTCGCCGAGCG 65081 ||| || || ||||||| ||||||||| | || | |||| |||||| ||| | Sbjct 16408589 GAAAAAAGCAGAATGGGCTATGAAATGGATCAACGGA---TCTCAAAGCTTCGCTGAGAG 16408645 Query 65082 CCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTA 65141 | | |||||||| || || || ||||| ||||||||||| || || | || | Sbjct 16408646 AATCGTAGCGTTTGCTTGCGTTGAAGGTATATTCTTCTCCGGTAGCTTTTGTTCGATATT 16408705 Query 65142 TTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCG 65201 ||||||||||| || ||| | ||||| || || || ||||| ||| | ||||| | Sbjct 16408706 CTGGTTGAAGAAACGAGGTTTAATGCCTGGACTCACTTTTTCAAACGAATTGATTTCGAG 16408765 Query 65202 AGATGAGGGTCTCCAC 65217 ||| || ||||| ||| Sbjct 16408766 AGACGAAGGTCTTCAC 16408781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569547800160